CSPI03G28420 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G28420
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Chr3 : 26014879 .. 26015894 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCTCATAAACAATTCCTTTGGAGATTCTTTCCTTTCTCCACTCCCTTAATGTTTCACATGCTTCCTTTTTCCAGTAGACAATCCATAGAGTCTTTTGCCACTTTGGGATCGGTCTCATTGAGCTCATCACAAGTTTTGCCAGCATATTCTTCGAATTTTCTTTTAGAATCTGTAGACTATGTTAAACTGGTTCAATCAGCTACTAAAACTGGGAAGTTGAACCATGGCAAACTCGTTCATTCCCATATGATTAGAACTTCTTTCAGGCTCTGTCTATTTTTGCAGAACAATCTTCTTAACGTGTACTGCAAATGTGGGGATACACGTTCTGCTGACAAATTGTTTGATAAAATGTCAAAATCAAACATTGTAACTTACAACTCTTTGATTTCTGGCCCTTGACAAGGTCATGATTTTGTTTGATAAAGCAAGAAGACTTGGTTTGAAACTTGATAAGTACAATTGTGCAGGAGCTCTTACAGCATGTAGTCAAAGGAGACTGACTTGATTATTTGAAAGAGTTCTTATTCAATCAAATCTATCCATGCATAAAGAGGACTAGAAAATTAGTGGTGACAATGCATAATATCATCTTTCATTAGTCGATCAGTAGTTAATTATACTAATCCAAATCCAAAAATTAGCTTCTAGATTTATGTAATTCAAAAGCAAAAGAAATAGAAATAATTAGACAATGAATTAAACCGATAAAATTGATAATTGATTCAAACATATTGCAATGTTTTTAATTCTCAACTTTTGTAAATTCGATTTTAAATAGGAAGCAAACGTAAACCGAAGCGTTCTAATAATATATTATTTATTTACTCTAAAAGTTAAAAGGGAATTCTCCTTCCTTTTGATTTTAGGTTACACAGCTTGGTGAAGACTCATATTGGGGAGCCATTTGTGAAACTGAGAATTCCTATTTCTTTCACTTCTCTCGGAATTCCATTGATTTGTGCACCAGTAAAGTCCTCCAGATCAGTCTCGCCACTATATTAGGCTAA

mRNA sequence

ATGTTGCCTCATAAACAATTCCTTTGGAGATTCTTTCCTTTCTCCACTCCCTTAATGTTTCACATGCTTCCTTTTTCCAGTAGACAATCCATAGAGTCTTTTGCCACTTTGGGATCGGTCTCATTGAGCTCATCACAAGTTTTGCCAGCATATTCTTCGAATTTTCTTTTAGAATCTGTAGACTATGTTAAACTGGTTCAATCAGCTACTAAAACTGGGAAGTTGAACCATGGCAAACTCGTTCATTCCCATATGATTAGAACTTCTTTCAGGCTCTGTCTATTTTTGCAGAACAATCTTCTTAACGTGTACTGCAAATGTGGGGATACACGTTCTGCTGACAAATTGTTTGATAAAATGTCAAAATCAAACATTGTTACACAGCTTGGTGAAGACTCATATTGGGGAGCCATTTGTGAAACTGAGAATTCCTATTTCTTTCACTTCTCTCGGAATTCCATTGATTTGTGCACCAGTAAAGTCCTCCAGATCAGTCTCGCCACTATATTAGGCTAA

Coding sequence (CDS)

ATGTTGCCTCATAAACAATTCCTTTGGAGATTCTTTCCTTTCTCCACTCCCTTAATGTTTCACATGCTTCCTTTTTCCAGTAGACAATCCATAGAGTCTTTTGCCACTTTGGGATCGGTCTCATTGAGCTCATCACAAGTTTTGCCAGCATATTCTTCGAATTTTCTTTTAGAATCTGTAGACTATGTTAAACTGGTTCAATCAGCTACTAAAACTGGGAAGTTGAACCATGGCAAACTCGTTCATTCCCATATGATTAGAACTTCTTTCAGGCTCTGTCTATTTTTGCAGAACAATCTTCTTAACGTGTACTGCAAATGTGGGGATACACGTTCTGCTGACAAATTGTTTGATAAAATGTCAAAATCAAACATTGTTACACAGCTTGGTGAAGACTCATATTGGGGAGCCATTTGTGAAACTGAGAATTCCTATTTCTTTCACTTCTCTCGGAATTCCATTGATTTGTGCACCAGTAAAGTCCTCCAGATCAGTCTCGCCACTATATTAGGCTAA

Homology

[Close]

BLAST of CSPI03G28420 vs. Swiss-Prot
Match: PP228_ARATH (Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 22  MLPFSSRQSIESFATLGSVSLSSSQVLPAYS--------SNFLLESVDYVKLVQSATKTG 81
           +L F ++    + A    V+L + +V   Y          N  L+S  Y  L Q+A K+G
Sbjct: 2   LLQFRAKTFFNNIAQDSLVTLITKRVGLGYRFLSSLCQPKNTALDSEGYKILFQTAAKSG 61

Query: 82  KLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVT 128
            +  GKL H HMI++S   CL+L NNLLN+YCKC +   A +LFD+M + NI++
Sbjct: 62  SVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIIS 115

[Close]

BLAST of CSPI03G28420 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-07
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 62  YVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMS 121
           Y  L  + + TG L  GK VH++MI++  +L  F  N LL++Y K G    A K+FD+++
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324

Query: 122 KSNIVT 128
           K ++V+
Sbjct: 325 KRDVVS 330

[Close]

BLAST of CSPI03G28420 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-07
Identity = 32/98 (32.65%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 31  IESFATLGSVSLSSSQVLPAYSSNFLLE--SVDYVKLVQSATKTGKLNHGKLVHSHMIRT 90
           I  +A +G+ S+S+  +      + L+E  +  Y  L+++ T    +  G+ +HS +IR+
Sbjct: 92  IRGYAEIGN-SISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 151

Query: 91  SFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIV 127
            F   +++QN+LL++Y  CGD  SA K+FDKM + ++V
Sbjct: 152 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

[Close]

BLAST of CSPI03G28420 vs. Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 21/66 (31.82%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 62  YVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMS 121
           +  L+ + T +G L  G+ VH   +    +  L + N+L+++YCKCGD + A ++FD+ S
Sbjct: 224 FTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFS 283

Query: 122 KSNIVT 128
             ++V+
Sbjct: 284 NKDVVS 289

[Close]

BLAST of CSPI03G28420 vs. Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 27/84 (32.14%), Postives = 46/84 (54.76%), Query Frame = 1


Query: 53  SNFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRS 112
           S F  +S  +V L+ +  +TG ++ G  VH ++I     L + L   L+N+Y +CGD   
Sbjct: 202 SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGK 261

Query: 113 ADKLFDKMSKSNIVTQLGEDSYWG 137
           A ++FDKM ++N+       S +G
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYG 285

[Close]

BLAST of CSPI03G28420 vs. TrEMBL
Match: A0A0A0LBY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G645920 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.8e-61
Identity = 128/163 (78.53%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV
Sbjct: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKL                                NNLLNVYCKCGDTRSA KLFD M
Sbjct: 61  DYVKL--------------------------------NNLLNVYCKCGDTRSAGKLFDTM 120

Query: 121 SKSNIVTQLGEDSYWGAICETENSYFFHFSRNSIDLCTSKVLQ 164
           SKSNIVTQLG DSYWGAICETENSYFFHFSRNSIDLCTSKVLQ
Sbjct: 121 SKSNIVTQLGGDSYWGAICETENSYFFHFSRNSIDLCTSKVLQ 131

[Close]

BLAST of CSPI03G28420 vs. TrEMBL
Match: A0A0A0KSU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648690 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.8e-61
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 1


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP KQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQV PAYSS FLLESV
Sbjct: 1   MLPQKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVFPAYSSTFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSATKTGKLNHGKLVHSHMI+TSFR CLFLQNNLLN+YCKCGDTRSADKLFDKM
Sbjct: 61  DYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKM 120

Query: 121 SKSNIVT 128
           SKSNIVT
Sbjct: 121 SKSNIVT 127

[Close]

BLAST of CSPI03G28420 vs. TrEMBL
Match: A0A061FK86_THECC (Pentatricopeptide repeat-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_036474 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-15
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 57  LESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKL 116
           L+SV Y KLVQ +TK+G   HGKL H+H+I+++F+ CLFL NNLLN+YCK G+   A +L
Sbjct: 14  LDSVIYTKLVQHSTKSGCFLHGKLAHTHIIKSAFKPCLFLLNNLLNMYCKAGEMDVAHRL 73

Query: 117 FDKMSKSNIVT 128
           FD+MSK N+V+
Sbjct: 74  FDRMSKPNLVS 84

[Close]

BLAST of CSPI03G28420 vs. TrEMBL
Match: B9S753_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1333850 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1


Query: 53  SNFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRS 112
           S F L+SV Y KLVQ ++K+G   HGKL H+HMI+T+F  CLFL NN LN+Y K G+  +
Sbjct: 3   SVFPLDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGN 62

Query: 113 ADKLFDKMSKSNIVT 128
           A KLFD+MS+ ++++
Sbjct: 63  AQKLFDRMSERSVIS 77

[Close]

BLAST of CSPI03G28420 vs. TrEMBL
Match: A0A087H9E4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G155500 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.0e-14
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1


Query: 22  MLPFSSRQSIESFATLGSVSLSSSQVLPAYSS--------NFLLESVDYVKLVQSATKTG 81
           ML F ++    S      + L + QV   Y S        N + +S  Y KLV++A K+G
Sbjct: 1   MLKFRAKTPFNSITQDSLLLLFTKQVGLGYRSLSWLCQPKNMVFDSEAYTKLVKTAAKSG 60

Query: 82  KLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVT 128
               GKL H HMI++SF  CL+L NNLLN+YCKC + R A KLFD+M + NI++
Sbjct: 61  SAVLGKLAHGHMIKSSFNPCLYLVNNLLNMYCKCRELRFARKLFDRMPERNIIS 114

[Close]

BLAST of CSPI03G28420 vs. TAIR10
Match: AT3G13880.1 (AT3G13880.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 22  MLPFSSRQSIESFATLGSVSLSSSQVLPAYS--------SNFLLESVDYVKLVQSATKTG 81
           +L F ++    + A    V+L + +V   Y          N  L+S  Y  L Q+A K+G
Sbjct: 2   LLQFRAKTFFNNIAQDSLVTLITKRVGLGYRFLSSLCQPKNTALDSEGYKILFQTAAKSG 61

Query: 82  KLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIVT 128
            +  GKL H HMI++S   CL+L NNLLN+YCKC +   A +LFD+M + NI++
Sbjct: 62  SVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIIS 115

[Close]

BLAST of CSPI03G28420 vs. TAIR10
Match: AT3G24000.1 (AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-08
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 62  YVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMS 121
           Y  L  + + TG L  GK VH++MI++  +L  F  N LL++Y K G    A K+FD+++
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324

Query: 122 KSNIVT 128
           K ++V+
Sbjct: 325 KRDVVS 330

[Close]

BLAST of CSPI03G28420 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-08
Identity = 32/98 (32.65%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 31  IESFATLGSVSLSSSQVLPAYSSNFLLE--SVDYVKLVQSATKTGKLNHGKLVHSHMIRT 90
           I  +A +G+ S+S+  +      + L+E  +  Y  L+++ T    +  G+ +HS +IR+
Sbjct: 92  IRGYAEIGN-SISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 151

Query: 91  SFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMSKSNIV 127
            F   +++QN+LL++Y  CGD  SA K+FDKM + ++V
Sbjct: 152 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

[Close]

BLAST of CSPI03G28420 vs. TAIR10
Match: AT2G37320.1 (AT2G37320.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 6.6e-08
Identity = 21/66 (31.82%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 62  YVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKMS 121
           +  L+ + T +G L  G+ VH   +    +  L + N+L+++YCKCGD + A ++FD+ S
Sbjct: 224 FTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFS 283

Query: 122 KSNIVT 128
             ++V+
Sbjct: 284 NKDVVS 289

[Close]

BLAST of CSPI03G28420 vs. TAIR10
Match: AT2G33760.1 (AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-08
Identity = 27/84 (32.14%), Postives = 46/84 (54.76%), Query Frame = 1


Query: 53  SNFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRS 112
           S F  +S  +V L+ +  +TG ++ G  VH ++I     L + L   L+N+Y +CGD   
Sbjct: 202 SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGK 261

Query: 113 ADKLFDKMSKSNIVTQLGEDSYWG 137
           A ++FDKM ++N+       S +G
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYG 285

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: gi|700203321|gb|KGN58454.1| (hypothetical protein Csa_3G645920 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 8.3e-61
Identity = 128/163 (78.53%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV
Sbjct: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKL                                NNLLNVYCKCGDTRSA KLFD M
Sbjct: 61  DYVKL--------------------------------NNLLNVYCKCGDTRSAGKLFDTM 120

Query: 121 SKSNIVTQLGEDSYWGAICETENSYFFHFSRNSIDLCTSKVLQ 164
           SKSNIVTQLG DSYWGAICETENSYFFHFSRNSIDLCTSKVLQ
Sbjct: 121 SKSNIVTQLGGDSYWGAICETENSYFFHFSRNSIDLCTSKVLQ 131

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: gi|778707858|ref|XP_004141630.2| (PREDICTED: pentatricopeptide repeat-containing protein At3g13880 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.4e-60
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 1


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP KQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQV PAYSS FLLESV
Sbjct: 1   MLPQKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVFPAYSSTFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSATKTGKLNHGKLVHSHMI+TSFR CLFLQNNLLN+YCKCGDTRSADKLFDKM
Sbjct: 61  DYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKM 120

Query: 121 SKSNIVT 128
           SKSNIVT
Sbjct: 121 SKSNIVT 127

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: gi|659119276|ref|XP_008459568.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 1.5e-54
Identity = 112/127 (88.19%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 1   MLPHKQFLWRFFPFSTPLMFHMLPFSSRQSIESFATLGSVSLSSSQVLPAYSSNFLLESV 60
           MLP K+FLWRF P STPLMFHMLPF SR+SIESFATL SVSLSSSQV PAYSS FLLESV
Sbjct: 1   MLPQKRFLWRFIPLSTPLMFHMLPFFSRESIESFATLESVSLSSSQVFPAYSSTFLLESV 60

Query: 61  DYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKLFDKM 120
           DYVKLVQSATKTG LN GKLVHSHMI+TSFR CLFLQNNLLN+YCKCGD RSADKLFDKM
Sbjct: 61  DYVKLVQSATKTGNLNQGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDIRSADKLFDKM 120

Query: 121 SKSNIVT 128
           SKSNIVT
Sbjct: 121 SKSNIVT 127

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: gi|225460338|ref|XP_002280412.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g13880 isoform X2 [Vitis vinifera])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 57  LESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKL 116
           L+SV Y KLVQ +T+TG L HGKL H HMI+T F+ CLFL NNLL +YCKCG+T  A KL
Sbjct: 17  LDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKL 76

Query: 117 FDKMSKSNIVT 128
           FD+M K N+V+
Sbjct: 77  FDRMPKRNVVS 87

[Close]

BLAST of CSPI03G28420 vs. NCBI nr
Match: gi|731431284|ref|XP_010665377.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Vitis vinifera])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 57  LESVDYVKLVQSATKTGKLNHGKLVHSHMIRTSFRLCLFLQNNLLNVYCKCGDTRSADKL 116
           L+SV Y KLVQ +T+TG L HGKL H HMI+T F+ CLFL NNLL +YCKCG+T  A KL
Sbjct: 17  LDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKL 76

Query: 117 FDKMSKSNIVT 128
           FD+M K N+V+
Sbjct: 77  FDRMPKRNVVS 87

The following BLAST results are available for this feature:

BLAST of CSPI03G28420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP228_ARATH	2.4e-12	37.72	Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana GN...	[more]
PP252_ARATH	5.3e-07	37.88	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]
PP330_ARATH	6.9e-07	32.65	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN...	[more]
PP192_ARATH	1.2e-06	31.82	Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN...	[more]
PP182_ARATH	1.5e-06	32.14	Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN...	[more]

BLAST of CSPI03G28420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBY6_CUCSA	5.8e-61	78.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G645920 PE=4 SV=1	[more]
A0A0A0KSU3_CUCSA	9.8e-61	95.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648690 PE=4 SV=1	[more]
A0A061FK86_THECC	2.8e-15	57.75	Pentatricopeptide repeat-containing protein, putative isoform 1 OS=Theobroma cac...	[more]
B9S753_RICCO	5.3e-14	53.33	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]
A0A087H9E4_ARAAL	9.0e-14	42.11	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G155500 PE=4 SV=1	[more]

BLAST of CSPI03G28420 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13880.1	1.4e-13	37.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G24000.1	3.0e-08	37.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	3.9e-08	32.65	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G37320.1	6.6e-08	31.82	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33760.1	8.6e-08	32.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CSPI03G28420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203321\|gb\|KGN58454.1\|	8.3e-61	78.53	hypothetical protein Csa_3G645920 [Cucumis sativus]	[more]
gi\|778707858\|ref\|XP_004141630.2\|	1.4e-60	95.28	PREDICTED: pentatricopeptide repeat-containing protein At3g13880 [Cucumis sativu...	[more]
gi\|659119276\|ref\|XP_008459568.1\|	1.5e-54	88.19	PREDICTED: pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Cuc...	[more]
gi\|225460338\|ref\|XP_002280412.1\|	1.9e-17	63.38	PREDICTED: pentatricopeptide repeat-containing protein At3g13880 isoform X2 [Vit...	[more]
gi\|731431284\|ref\|XP_010665377.1\|	1.9e-17	63.38	PREDICTED: pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Vit...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28420.1	CSPI03G28420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 98..125 score: 4.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 98..126 score: 3.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 58..92 score: 6.259coord: 93..127 score: 9
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 62..127 score: 9.7
None	No IPR available	PANTHER	PTHR24015:SF897	SUBFAMILY NOT NAMED	coord: 62..127 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G28420	Csa3G645920	Cucumber (Chinese Long) v2	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G28420	Melon (DHL92) v3.6.1	cpimedB179
CSPI03G28420	Melon (DHL92) v3.6.1	cpimedB196
CSPI03G28420	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G28420	Cucumber (Gy14) v2	cgybcpiB319
CSPI03G28420	Silver-seed gourd	carcpiB0230
CSPI03G28420	Silver-seed gourd	carcpiB0503
CSPI03G28420	Silver-seed gourd	carcpiB0634
CSPI03G28420	Silver-seed gourd	carcpiB0803
CSPI03G28420	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G28420	Cucumber (Chinese Long) v3	cpicucB197
CSPI03G28420	Watermelon (97103) v2	cpiwmbB248
CSPI03G28420	Watermelon (97103) v2	cpiwmbB264
CSPI03G28420	Wax gourd	cpiwgoB276
CSPI03G28420	Wax gourd	cpiwgoB352
CSPI03G28420	Wild cucumber (PI 183967)	cpicpiB146
CSPI03G28420	Cucumber (Gy14) v1	cgycpiB221
CSPI03G28420	Cucumber (Gy14) v1	cgycpiB533
CSPI03G28420	Cucurbita maxima (Rimu)	cmacpiB245
CSPI03G28420	Cucurbita maxima (Rimu)	cmacpiB366
CSPI03G28420	Cucurbita maxima (Rimu)	cmacpiB450
CSPI03G28420	Cucurbita maxima (Rimu)	cmacpiB905
CSPI03G28420	Cucurbita moschata (Rifu)	cmocpiB234
CSPI03G28420	Cucurbita moschata (Rifu)	cmocpiB438
CSPI03G28420	Cucurbita moschata (Rifu)	cmocpiB885
CSPI03G28420	Cucumber (Chinese Long) v2	cpicuB167
CSPI03G28420	Melon (DHL92) v3.5.1	cpimeB184
CSPI03G28420	Melon (DHL92) v3.5.1	cpimeB202
CSPI03G28420	Watermelon (Charleston Gray)	cpiwcgB182
CSPI03G28420	Watermelon (Charleston Gray)	cpiwcgB262
CSPI03G28420	Watermelon (97103) v1	cpiwmB216
CSPI03G28420	Watermelon (97103) v1	cpiwmB187
CSPI03G28420	Cucurbita pepo (Zucchini)	cpecpiB139
CSPI03G28420	Cucurbita pepo (Zucchini)	cpecpiB314
CSPI03G28420	Cucurbita pepo (Zucchini)	cpecpiB561
CSPI03G28420	Cucurbita pepo (Zucchini)	cpecpiB603
CSPI03G28420	Bottle gourd (USVL1VR-Ls)	cpilsiB180
CSPI03G28420	Bottle gourd (USVL1VR-Ls)	cpilsiB232