CSPI03G28400 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G28400
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 26006792 .. 26007323 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACGTTGTTCATCTCCAAATGGGTTCATTAATTTGGAGATCATAGCAATCGAGAAAGAGAAAAAAATGAAGAGTGGAAGAAAGGTGATGAGATCAGGTGTGGTTTTAGCGGTGGTGGCGGTGTGTTTATTAGGAAGGGTGGTGTCAGGACGAGCACAGGAAGATAATTTGAAAGAGGTGTGCAGCAATGACTTCGAGAAAGTGGTGAGTTGTTTCGCGTATGCGACGGGGAAAGCAATGACACCGATGGAGGAGTGTTGTGATTCGATTGAAGGTATAAAAGAAAGTAAGCCAAAGTGCTTGTGTTTCTTCATACAACAGACACATAATGGAAATCAACACATCAAGAGCTTAGGAATTCAAGAGATTAAGCTTTTACATCTTCCTTCTGTTTGTCACTTCAAAAGCTGGAGTGTTAGCCATTCCCTAACTAATTTCTCTTCCCATCCCTCTTTCTTTCTTTTCTTTTCTTTTCTTTTTTCTTAAATTTAATTTATATTTTCTAGGTTGCTGGATTGTTCAGTAA

mRNA sequence

ATGGAAAAACGTTGTTCATCTCCAAATGGGTTCATTAATTTGGAGATCATAGCAATCGAGAAAGAGAAAAAAATGAAGAGTGGAAGAAAGGTGATGAGATCAGGTGTGGTTTTAGCGGTGGTGGCGGTGTGTTTATTAGGAAGGGTGGTGTCAGGACGAGCACAGGAAGATAATTTGAAAGAGGTGTGCAGCAATGACTTCGAGAAAGTGGTGAGTTGTTTCGCGTATGCGACGGGGAAAGCAATGACACCGATGGAGGAGTGTTGTGATTCGATTGAAGGTTGCTGGATTGTTCAGTAA

Coding sequence (CDS)

ATGGAAAAACGTTGTTCATCTCCAAATGGGTTCATTAATTTGGAGATCATAGCAATCGAGAAAGAGAAAAAAATGAAGAGTGGAAGAAAGGTGATGAGATCAGGTGTGGTTTTAGCGGTGGTGGCGGTGTGTTTATTAGGAAGGGTGGTGTCAGGACGAGCACAGGAAGATAATTTGAAAGAGGTGTGCAGCAATGACTTCGAGAAAGTGGTGAGTTGTTTCGCGTATGCGACGGGGAAAGCAATGACACCGATGGAGGAGTGTTGTGATTCGATTGAAGGTTGCTGGATTGTTCAGTAA

Homology

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BLAST of CSPI03G28400 vs. TrEMBL
Match: A0A0A0KV96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589340 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-23
Identity = 59/69 (85.51%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 25 MKSGRKVMRSGVVLAVVAVCLLGRVVSGRAQEDNLKEVCSNDFEKVVSCFAYATGKAMTP 84
          MKSGRKV    VVLAVVAVCLLGRVV GRAQED+LKE CSNDFEKVVSCFAYATGKA  P
Sbjct: 1  MKSGRKV---SVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAP 60

Query: 85 MEECCDSIE 94
           EECCDSIE
Sbjct: 61 TEECCDSIE 66

[Close]

BLAST of CSPI03G28400 vs. TrEMBL
Match: M5XMH0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012022mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 38 LAVVAVCLLGRVVSGRAQEDNLKEVCSNDFEKVVSCFAYATGKAMTPMEECCDSIEG 95
          + VVA+ L+   V   + E  + + CSN F+KV  C +YATGKA TP +ECC+S++G
Sbjct: 5  MLVVALFLIVGSVREASAEATVAQKCSNQFQKVAVCLSYATGKAETPTKECCESVKG 61

[Close]

BLAST of CSPI03G28400 vs. TAIR10
Match: AT1G27950.1 (AT1G27950.1 glycosylphosphatidylinositol-anchored lipid protein transfer 1)

HSP 1 Score: 47.4 bits (111), Expect = 6.1e-06
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 1


Query: 59 LKEVCSNDFEKVVSCFAYATGKAMTPMEECCDSIE 94
          L + C+ DF+KV  C  +ATGKA  P ++CCD++E
Sbjct: 31 LADECNQDFQKVTLCLDFATGKATIPSKKCCDAVE 65

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BLAST of CSPI03G28400 vs. NCBI nr
Match: gi|659090460|ref|XP_008446028.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 25 MKSGRKVMRS-GVVLAVVAVCLLGRVVSGRAQEDNLKEVCSNDFEKVVSCFAYATGKAMT 84
          MKSGRKVMRS GVVLAVVAVCLLGRVV GRA+E+NLKE CSNDFEKVVSCFAYATGKA  
Sbjct: 1  MKSGRKVMRSAGVVLAVVAVCLLGRVVPGRAEEENLKEECSNDFEKVVSCFAYATGKAAA 60

Query: 85 PMEECCDSIEG 95
          P EECCDSIEG
Sbjct: 61 PTEECCDSIEG 71

[Close]

BLAST of CSPI03G28400 vs. NCBI nr
Match: gi|778704575|ref|XP_004135333.2| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-23
Identity = 59/69 (85.51%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 25 MKSGRKVMRSGVVLAVVAVCLLGRVVSGRAQEDNLKEVCSNDFEKVVSCFAYATGKAMTP 84
          MKSGRKV    VVLAVVAVCLLGRVV GRAQED+LKE CSNDFEKVVSCFAYATGKA  P
Sbjct: 1  MKSGRKV---SVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAP 60

Query: 85 MEECCDSIE 94
           EECCDSIE
Sbjct: 61 TEECCDSIE 66

[Close]

BLAST of CSPI03G28400 vs. NCBI nr
Match: gi|596288329|ref|XP_007225920.1| (hypothetical protein PRUPE_ppa012022mg [Prunus persica])

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 38 LAVVAVCLLGRVVSGRAQEDNLKEVCSNDFEKVVSCFAYATGKAMTPMEECCDSIEG 95
          + VVA+ L+   V   + E  + + CSN F+KV  C +YATGKA TP +ECC+S++G
Sbjct: 5  MLVVALFLIVGSVREASAEATVAQKCSNQFQKVAVCLSYATGKAETPTKECCESVKG 61

[Close]

BLAST of CSPI03G28400 vs. NCBI nr
Match: gi|743916307|ref|XP_011002127.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica])

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-06
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 35 GVVLAVVAVCLLGRVVSGRAQEDNLKEVCSNDFEKVVSCFAYATGKAMTPMEECCDSIEG 94
          GV+L   +   + R V G    D L E CS+DF+KV+ C  YATGKA TP ++CC +++G
Sbjct: 10 GVLLFFASSASVFRAVDG----DGLSEECSSDFQKVMGCLNYATGKANTPTKDCCSAVQG 65

[Close]

BLAST of CSPI03G28400 vs. NCBI nr
Match: gi|645230948|ref|XP_008222168.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Prunus mume])

HSP 1 Score: 58.2 bits (139), Expect = 9.8e-06
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 38 LAVVAVCLLGRVVSGRAQEDNLKEVCSNDFEKVVSCFAYATGKAMTPMEECCDSIEG 95
          + VVA+ L+   VS  +    + + CSN F+KV  C  YATGKA TP +ECC+S++G
Sbjct: 5  MLVVALLLIVGSVSEASAAATVAQKCSNQFQKVAVCLNYATGKAETPTKECCESVKG 61

The following BLAST results are available for this feature:

BLAST of CSPI03G28400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G28400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV96_CUCSA	3.6e-23	85.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589340 PE=4 SV=1	[more]
M5XMH0_PRUPE	3.1e-06	45.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012022mg PE=4 SV=1	[more]

BLAST of CSPI03G28400 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27950.1	6.1e-06	48.57	glycosylphosphatidylinositol-anchored lipid protein transfer 1	[more]

BLAST of CSPI03G28400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090460\|ref\|XP_008446028.1\|	5.0e-26	88.73	PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis melo]	[more]
gi\|778704575\|ref\|XP_004135333.2\|	5.2e-23	85.51	PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis sativus]	[more]
gi\|596288329\|ref\|XP_007225920.1\|	4.4e-06	45.61	hypothetical protein PRUPE_ppa012022mg [Prunus persica]	[more]
gi\|743916307\|ref\|XP_011002127.1\|	7.5e-06	45.00	PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euph...	[more]
gi\|645230948\|ref\|XP_008222168.1\|	9.8e-06	45.61	PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28400.1	CSPI03G28400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 63..94 score: 1.5
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 63..93 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G28400	CsaV3_3G030810	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G28400	CsGy3G026370	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G28400	Cucumber (Gy14) v2	cgybcpiB319
CSPI03G28400	Silver-seed gourd	carcpiB0230
CSPI03G28400	Silver-seed gourd	carcpiB0503
CSPI03G28400	Silver-seed gourd	carcpiB0634
CSPI03G28400	Silver-seed gourd	carcpiB0803
CSPI03G28400	Cucumber (Chinese Long) v3	cpicucB197
CSPI03G28400	Watermelon (97103) v2	cpiwmbB248
CSPI03G28400	Watermelon (97103) v2	cpiwmbB264
CSPI03G28400	Wax gourd	cpiwgoB276
CSPI03G28400	Wax gourd	cpiwgoB352
CSPI03G28400	Wild cucumber (PI 183967)	cpicpiB146
CSPI03G28400	Cucumber (Gy14) v1	cgycpiB221
CSPI03G28400	Cucumber (Gy14) v1	cgycpiB533
CSPI03G28400	Cucurbita maxima (Rimu)	cmacpiB245
CSPI03G28400	Cucurbita maxima (Rimu)	cmacpiB366
CSPI03G28400	Cucurbita maxima (Rimu)	cmacpiB450
CSPI03G28400	Cucurbita maxima (Rimu)	cmacpiB905
CSPI03G28400	Cucurbita moschata (Rifu)	cmocpiB234
CSPI03G28400	Cucurbita moschata (Rifu)	cmocpiB438
CSPI03G28400	Cucurbita moschata (Rifu)	cmocpiB885
CSPI03G28400	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G28400	Cucumber (Chinese Long) v2	cpicuB167
CSPI03G28400	Melon (DHL92) v3.5.1	cpimeB184
CSPI03G28400	Melon (DHL92) v3.5.1	cpimeB202
CSPI03G28400	Watermelon (Charleston Gray)	cpiwcgB182
CSPI03G28400	Watermelon (Charleston Gray)	cpiwcgB262
CSPI03G28400	Watermelon (97103) v1	cpiwmB216
CSPI03G28400	Watermelon (97103) v1	cpiwmB187
CSPI03G28400	Cucurbita pepo (Zucchini)	cpecpiB139
CSPI03G28400	Cucurbita pepo (Zucchini)	cpecpiB314
CSPI03G28400	Cucurbita pepo (Zucchini)	cpecpiB561
CSPI03G28400	Cucurbita pepo (Zucchini)	cpecpiB603
CSPI03G28400	Bottle gourd (USVL1VR-Ls)	cpilsiB180
CSPI03G28400	Bottle gourd (USVL1VR-Ls)	cpilsiB232
CSPI03G28400	Melon (DHL92) v3.6.1	cpimedB179
CSPI03G28400	Melon (DHL92) v3.6.1	cpimedB196