CSPI03G26820 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G26820
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProtodermal factor 2, putative
LocationChr3 : 24259024 .. 24260098 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAACAATCTGAGGAAATATTTTCTACAAGCAGTTAATCCTTTTCCAACAGAAAGAAAATGGGATTTGTTTTCTGATGATAAAATAAGGATTTTGAGAGACATCAAAGCAAGTTACATTGGCCGTCGTGATGATTTTATTGCCATACGTACCGTATGTCTTGCTGAAACCCCCAGCACACTGTTGACATATCTAGACACAAATAATTACATTTTGCAGGTATCCTCCTTCCTTAGCTCGATGAGAATTTAGTCCCTAAACTCACATTGTTTGTGTCTAATTTGGTTCCTTCACTTTCAAAAGTATAGAAGAGAAAGTTTAAGATTGTATTAAAATAAAATTTAATTGTATATCTAACATATCAATTAATATTAAATTTTTAAAAAATTTTAGAAACTAGTTAGACACAAATAAAAGATTAGACCTTTTAGATACTTTTAAAAGTCCAAATATCAAATAGACACGTATTGAATTTTCTCTCTCATTTTGTACCCATCAAACTTACATACATGACAACAAACAGACGAGCAAAAAATCACAAGCACAGCTCTCGATGACAGTTGCACTTTTGGCAACGGATGAAAGTTCTTGCACTGTTTTAAGTGTGAAAAAAGAAACAGGAGATGAGGATACTAAGGTAACTTCTCTTTACATAAACTTCTTTAACTGATCGTTTCCCAAAACTTTTGCACTTCAATGTTATGTTCCTTTAACGTGACAGGACAACTACTTTTTCCTACAAGAGTCTACAGAGAATGAATATTGCTCCTTCATCCTATCATCACAAATGACAAAAGCGGATGTTCATGTCTCTCTCCTACCAATGTTTTGTAGGAATTGTTTGTTTTTGAGACCTTCCGGTTTTGCCATAATGCCTGCGGAACCAGGAGGTCTACAGTCCAAGGCATCATTTGTGACCATATACATTCGTCGGGAGCTCAAAAATATGGAAGTTCATCAAGTGATTGAAGCAATGAGTTGTGACATGGATGCTGTCATTGATCAAATATCCAATATTCAATTTCCAACCACTATAAATGGGAAGTTTGAACAGAATAACCCTAATCAGTGA

mRNA sequence

ATGGGGAACAATCTGAGGAAATATTTTCTACAAGCAGTTAATCCTTTTCCAACAGAAAGAAAATGGGATTTGTTTTCTGATGATAAAATAAGGATTTTGAGAGACATCAAAGCAAGTTACATTGGCCGTCGTGATGATTTTATTGCCATACGTACCGTATGTCTTGCTGAAACCCCCAGCACACTGTTGACATATCTAGACACAAATAATTACATTTTGCAGACGAGCAAAAAATCACAAGCACAGCTCTCGATGACAGTTGCACTTTTGGCAACGGATGAAAGTTCTTGCACTGTTTTAAGTGTGAAAAAAGAAACAGGAGATGAGGATACTAAGGACAACTACTTTTTCCTACAAGAGTCTACAGAGAATGAATATTGCTCCTTCATCCTATCATCACAAATGACAAAAGCGGATGTTCATGTCTCTCTCCTACCAATGTTTTGTAGGAATTGTTTGTTTTTGAGACCTTCCGGTTTTGCCATAATGCCTGCGGAACCAGGAGGTCTACAGTCCAAGGCATCATTTGTGACCATATACATTCGTCGGGAGCTCAAAAATATGGAAGTTCATCAAGTGATTGAAGCAATGAGTTGTGACATGGATGCTGTCATTGATCAAATATCCAATATTCAATTTCCAACCACTATAAATGGGAAGTTTGAACAGAATAACCCTAATCAGTGA

Coding sequence (CDS)

ATGGGGAACAATCTGAGGAAATATTTTCTACAAGCAGTTAATCCTTTTCCAACAGAAAGAAAATGGGATTTGTTTTCTGATGATAAAATAAGGATTTTGAGAGACATCAAAGCAAGTTACATTGGCCGTCGTGATGATTTTATTGCCATACGTACCGTATGTCTTGCTGAAACCCCCAGCACACTGTTGACATATCTAGACACAAATAATTACATTTTGCAGACGAGCAAAAAATCACAAGCACAGCTCTCGATGACAGTTGCACTTTTGGCAACGGATGAAAGTTCTTGCACTGTTTTAAGTGTGAAAAAAGAAACAGGAGATGAGGATACTAAGGACAACTACTTTTTCCTACAAGAGTCTACAGAGAATGAATATTGCTCCTTCATCCTATCATCACAAATGACAAAAGCGGATGTTCATGTCTCTCTCCTACCAATGTTTTGTAGGAATTGTTTGTTTTTGAGACCTTCCGGTTTTGCCATAATGCCTGCGGAACCAGGAGGTCTACAGTCCAAGGCATCATTTGTGACCATATACATTCGTCGGGAGCTCAAAAATATGGAAGTTCATCAAGTGATTGAAGCAATGAGTTGTGACATGGATGCTGTCATTGATCAAATATCCAATATTCAATTTCCAACCACTATAAATGGGAAGTTTGAACAGAATAACCCTAATCAGTGA
Homology
[Close]
BLAST of CSPI03G26820 vs. TrEMBL
Match: A0A0A0L8M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G609280 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 7.5e-125
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1 

Query: 1   MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS 60
           MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS
Sbjct: 335 MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS 394

Query: 61  TLLTYLDTNNYILQTSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTKDNYFFLQE 120
           TLLTYLDTNNYILQTSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTKDNYFFLQE
Sbjct: 395 TLLTYLDTNNYILQTSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTKDNYFFLQE 454

Query: 121 STENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGLQSKASFVTIY 180
           STENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGLQSKASFVTIY
Sbjct: 455 STENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGLQSKASFVTIY 514

Query: 181 IRRELKNMEVHQVIEAMSCDMDAVIDQISNIQFPTTINGKFEQNNPNQ 229
           IRRELKNMEVHQVIEAMSCDMDAVIDQISNIQFPTTINGKFEQNNPNQ
Sbjct: 515 IRRELKNMEVHQVIEAMSCDMDAVIDQISNIQFPTTINGKFEQNNPNQ 562

[Close]
BLAST of CSPI03G26820 vs. NCBI nr
Match: gi|700203167|gb|KGN58300.1| (hypothetical protein Csa_3G609280 [Cucumis sativus])

HSP 1 Score: 454.5 bits (1168), Expect = 1.1e-124
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1 

Query: 1   MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS 60
           MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS
Sbjct: 335 MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS 394

Query: 61  TLLTYLDTNNYILQTSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTKDNYFFLQE 120
           TLLTYLDTNNYILQTSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTKDNYFFLQE
Sbjct: 395 TLLTYLDTNNYILQTSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTKDNYFFLQE 454

Query: 121 STENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGLQSKASFVTIY 180
           STENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGLQSKASFVTIY
Sbjct: 455 STENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGLQSKASFVTIY 514

Query: 181 IRRELKNMEVHQVIEAMSCDMDAVIDQISNIQFPTTINGKFEQNNPNQ 229
           IRRELKNMEVHQVIEAMSCDMDAVIDQISNIQFPTTINGKFEQNNPNQ
Sbjct: 515 IRRELKNMEVHQVIEAMSCDMDAVIDQISNIQFPTTINGKFEQNNPNQ 562

[Close]
BLAST of CSPI03G26820 vs. NCBI nr
Match: gi|659093670|ref|XP_008447653.1| (PREDICTED: homeobox-leucine zipper protein ROC7-like [Cucumis melo])

HSP 1 Score: 371.7 bits (953), Expect = 9.2e-100
Identity = 186/224 (83.04%), Postives = 202/224 (90.18%), Query Frame = 1 

Query: 1   MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS 60
           +GNNLRKYFLQ VNPFPTER WDLFSDDKIRI RDIKASYIG  DD IAIRTVC+AETP+
Sbjct: 330 IGNNLRKYFLQTVNPFPTERTWDLFSDDKIRISRDIKASYIGYHDDCIAIRTVCIAETPT 389

Query: 61  TLLTYLDTNNYILQTSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTKDNYFFLQE 120
           TLLTYLD NN+I QTSK SQAQL M VALLATDESSCT+LS+KKE GDED+KDN FFLQE
Sbjct: 390 TLLTYLDVNNHIFQTSKNSQAQLEMAVALLATDESSCTILSMKKEIGDEDSKDNKFFLQE 449

Query: 121 STENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGLQSKASFVTIY 180
           STENEYCSFILSSQM++ADVH+SLLP FCRN LFLRPSGFAIMPA PGGLQSKASFVTIY
Sbjct: 450 STENEYCSFILSSQMSEADVHISLLPRFCRNSLFLRPSGFAIMPAGPGGLQSKASFVTIY 509

Query: 181 IRRELKNMEVHQVIEAMSCDMDAVIDQISNIQFPTTINGKFEQN 225
           IRRELKNM+V QVIEAMSC ++AVID+ISNIQFP  I+G+ E N
Sbjct: 510 IRRELKNMKVEQVIEAMSCHVNAVIDRISNIQFPCAIDGEVEHN 553

[Close]
BLAST of CSPI03G26820 vs. NCBI nr
Match: gi|764527256|ref|XP_011458040.1| (PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 72/223 (32.29%), Postives = 124/223 (55.61%), Query Frame = 1 

Query: 1   MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS 60
           +   L+  FL  +   P E KWDL SD  I+IL+D  A    +R++++A+ T  +  TP 
Sbjct: 284 LARRLKMVFLSYIAEHPDENKWDLLSDTGIKILKDTDA----QRNNYMAVTTSRVEATPL 343

Query: 61  TLLTYLDTNNYILQ-TSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTK------- 120
           ++  +L   N  LQ    +  A+    + L+  D S+C  +  K+   +E T+       
Sbjct: 344 SVFNFLVKRNRQLQWPCLEEMAEPEEVINLVTDDHSNCITIHAKRVNQNESTERVMQTES 403

Query: 121 -DNY-FFLQESTENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGL 180
            +N+ + LQE++++E+CSFI+SSQ+ +++V+ +L   F +    LRP GF+I+P    G 
Sbjct: 404 TENFEYVLQEASKDEFCSFIISSQIDQSEVNSAL--GFGQLSCSLRPFGFSIIPDGSRGH 463

Query: 181 QSKASFVTIYIRRELK-NMEVHQVIEAMSCDMDAVIDQISNIQ 213
            S AS VT+  + EL+ ++E  +VIE MS  +  V + I+ +Q
Sbjct: 464 LSDASIVTMACQLELEADLETGEVIERMSNLVSGVFEAINGLQ 500

[Close]
BLAST of CSPI03G26820 vs. NCBI nr
Match: gi|764527250|ref|XP_011458039.1| (PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 99.8 bits (247), Expect = 6.8e-18
Identity = 71/222 (31.98%), Postives = 123/222 (55.41%), Query Frame = 1 

Query: 1   MGNNLRKYFLQAVNPFPTERKWDLFSDDKIRILRDIKASYIGRRDDFIAIRTVCLAETPS 60
           +   L+  FL  +   P E KWDL SD  I+IL+D  A    +R++++A+ T  +  TP 
Sbjct: 284 LARRLKMVFLSYIAEHPDENKWDLLSDTGIKILKDTDA----QRNNYMAVTTSRVEATPL 343

Query: 61  TLLTYLDTNNYILQ-TSKKSQAQLSMTVALLATDESSCTVLSVKKETGDEDTK------- 120
           ++  +L   N  LQ    +  A+    + L+  D S+C  +  K+   +E T+       
Sbjct: 344 SVFNFLVKRNRQLQWPCLEEMAEPEEVINLVTDDHSNCITIHAKRVNQNESTERVMQTES 403

Query: 121 -DNY-FFLQESTENEYCSFILSSQMTKADVHVSLLPMFCRNCLFLRPSGFAIMPAEPGGL 180
            +N+ + LQE++++E+CSFI+SSQ+ +++V+ +L   F +    LRP GF+I+P    G 
Sbjct: 404 TENFEYVLQEASKDEFCSFIISSQIDQSEVNSAL--GFGQLSCSLRPFGFSIIPDGSRGH 463

Query: 181 QSKASFVTIYIRRELK-NMEVHQVIEAMSCDMDAVIDQISNI 212
            S AS VT+  + EL+ ++E  +VIE MS  +  V + I+ +
Sbjct: 464 LSDASIVTMACQLELEADLETGEVIERMSNLVSGVFEAINGV 499

The following BLAST results are available for this feature:
BLAST of CSPI03G26820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G26820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8M1_CUCSA7.5e-125100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G609280 PE=4 SV=1[more]
BLAST of CSPI03G26820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G26820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203167|gb|KGN58300.1|1.1e-124100.00hypothetical protein Csa_3G609280 [Cucumis sativus][more]
gi|659093670|ref|XP_008447653.1|9.2e-10083.04PREDICTED: homeobox-leucine zipper protein ROC7-like [Cucumis melo][more]
gi|764527256|ref|XP_011458040.1|2.3e-1832.29PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like isoform X2 [Fragaria... [more]
gi|764527250|ref|XP_011458039.1|6.8e-1831.98PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like isoform X1 [Fragaria... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008289 lipid binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G26820.1CSPI03G26820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G26820Cla005947Watermelon (97103) v1cpiwmB226
CSPI03G26820Csa3G609280Cucumber (Chinese Long) v2cpicuB120
CSPI03G26820ClCG07G001370Watermelon (Charleston Gray)cpiwcgB258
CSPI03G26820Lsi05G010500Bottle gourd (USVL1VR-Ls)cpilsiB199
CSPI03G26820MELO3C030773.2Melon (DHL92) v3.6.1cpimedB211
CSPI03G26820CsaV3_3G028330Cucumber (Chinese Long) v3cpicucB144
CSPI03G26820Cla97C07G129650Watermelon (97103) v2cpiwmbB244
CSPI03G26820Bhi05G000119Wax gourdcpiwgoB309
CSPI03G26820Cucsa.140730Cucumber (Gy14) v1cgycpiB207
CSPI03G26820CmaCh02G017210Cucurbita maxima (Rimu)cmacpiB606
CSPI03G26820CmaCh19G001150Cucurbita maxima (Rimu)cmacpiB516
CSPI03G26820CmoCh19G001280Cucurbita moschata (Rifu)cmocpiB506
CSPI03G26820CmoCh02G017640Cucurbita moschata (Rifu)cmocpiB595
CSPI03G26820Cp4.1LG05g00890Cucurbita pepo (Zucchini)cpecpiB718
CSPI03G26820Cp4.1LG15g01030Cucurbita pepo (Zucchini)cpecpiB242
CSPI03G26820CsGy3G025020Cucumber (Gy14) v2cgybcpiB110
CSPI03G26820Carg08941Silver-seed gourdcarcpiB0816
CSPI03G26820Carg16902Silver-seed gourdcarcpiB0784
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G26820Wild cucumber (PI 183967)cpicpiB070
CSPI03G26820Wild cucumber (PI 183967)cpicpiB104
CSPI03G26820Cucumber (Gy14) v1cgycpiB381
CSPI03G26820Cucurbita maxima (Rimu)cmacpiB254
CSPI03G26820Cucurbita maxima (Rimu)cmacpiB848
CSPI03G26820Cucurbita maxima (Rimu)cmacpiB911
CSPI03G26820Cucurbita moschata (Rifu)cmocpiB239
CSPI03G26820Cucurbita moschata (Rifu)cmocpiB829
CSPI03G26820Cucumber (Chinese Long) v2cpicuB119
CSPI03G26820Cucumber (Chinese Long) v2cpicuB129
CSPI03G26820Melon (DHL92) v3.5.1cpimeB217
CSPI03G26820Melon (DHL92) v3.5.1cpimeB248
CSPI03G26820Watermelon (Charleston Gray)cpiwcgB247
CSPI03G26820Watermelon (97103) v1cpiwmB252
CSPI03G26820Watermelon (97103) v1cpiwmB279
CSPI03G26820Cucurbita pepo (Zucchini)cpecpiB310
CSPI03G26820Cucurbita pepo (Zucchini)cpecpiB610
CSPI03G26820Cucurbita pepo (Zucchini)cpecpiB858
CSPI03G26820Bottle gourd (USVL1VR-Ls)cpilsiB156
CSPI03G26820Bottle gourd (USVL1VR-Ls)cpilsiB201
CSPI03G26820Melon (DHL92) v3.6.1cpimedB219
CSPI03G26820Melon (DHL92) v3.6.1cpimedB242
CSPI03G26820Cucumber (Gy14) v2cgybcpiB121
CSPI03G26820Silver-seed gourdcarcpiB0267
CSPI03G26820Silver-seed gourdcarcpiB0997
CSPI03G26820Silver-seed gourdcarcpiB1114
CSPI03G26820Cucumber (Chinese Long) v3cpicucB143
CSPI03G26820Cucumber (Chinese Long) v3cpicucB155
CSPI03G26820Watermelon (97103) v2cpiwmbB229
CSPI03G26820Watermelon (97103) v2cpiwmbB235