CSPI03G26460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G26460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 23857522 .. 23857914 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAAGTATGTTCCATGATACTGAAAACAAAAATTTTGAAAAAGGAGAATGCTCTAAAGAATCTGAGGGTATTAACACTCAAATTCCTGAGTATTTCCTAAAATTCCAGGAAATTATGTTGAAAAACAATGAAAAATTAAATAAGAAGCTAGACAAACTCATTGGGAAGGTTGAAGAGATTAAAATAAAAATTACTAATAGAAGTAGTTCAAAGACGGAAGAAGAAAATTGGGAAGATAGAGATGAGGATCGAGATGGAGGAAATGGGAAAAGAAATGACAGATTGGCAGACGATGGAGAAGATGGTAATACTGAAAATCTAAATATAGATGAAAAATGGGAGAGAACTACAATAATAAATAGTGAAAATGAAGCTGCAAGGGTATGA

mRNA sequence

ATGGAAGGAAGTATGTTCCATGATACTGAAAACAAAAATTTTGAAAAAGGAGAATGCTCTAAAGAATCTGAGGGTATTAACACTCAAATTCCTGAGTATTTCCTAAAATTCCAGGAAATTATGTTGAAAAACAATGAAAAATTAAATAAGAAGCTAGACAAACTCATTGGGAAGGTTGAAGAGATTAAAATAAAAATTACTAATAGAAGTAGTTCAAAGACGGAAGAAGAAAATTGGGAAGATAGAGATGAGGATCGAGATGGAGGAAATGGGAAAAGAAATGACAGATTGGCAGACGATGGAGAAGATGGTAATACTGAAAATCTAAATATAGATGAAAAATGGGAGAGAACTACAATAATAAATAGTGAAAATGAAGCTGCAAGGGTATGA

Coding sequence (CDS)

ATGGAAGGAAGTATGTTCCATGATACTGAAAACAAAAATTTTGAAAAAGGAGAATGCTCTAAAGAATCTGAGGGTATTAACACTCAAATTCCTGAGTATTTCCTAAAATTCCAGGAAATTATGTTGAAAAACAATGAAAAATTAAATAAGAAGCTAGACAAACTCATTGGGAAGGTTGAAGAGATTAAAATAAAAATTACTAATAGAAGTAGTTCAAAGACGGAAGAAGAAAATTGGGAAGATAGAGATGAGGATCGAGATGGAGGAAATGGGAAAAGAAATGACAGATTGGCAGACGATGGAGAAGATGGTAATACTGAAAATCTAAATATAGATGAAAAATGGGAGAGAACTACAATAATAAATAGTGAAAATGAAGCTGCAAGGGTATGA

Homology

[Close]

BLAST of CSPI03G26460 vs. TrEMBL
Match: A0A0A0L8U3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603550 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.4e-64
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MEGSMFHDTENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVE 60
           MEGSMFHDTENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVE
Sbjct: 1   MEGSMFHDTENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVE 60

Query: 61  EIKIKITNRSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTI 120
           EIKIKITNRSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTI
Sbjct: 61  EIKIKITNRSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTI 120

Query: 121 INSENEAARV 131
           INSENEAARV
Sbjct: 121 INSENEAARV 130

[Close]

BLAST of CSPI03G26460 vs. TrEMBL
Match: A0A0A0LXM6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G639010 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.4e-43
Identity = 93/121 (76.86%), Postives = 110/121 (90.91%), Query Frame = 1


Query: 9   TENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVEEIKIKITN 68
           T  +NFEKGECSKESEGINTQIPEY+L FQ+IML NNE+LNKKLDKLIG+VEEIK K+TN
Sbjct: 4   TSTRNFEKGECSKESEGINTQIPEYYLTFQKIMLTNNEELNKKLDKLIGEVEEIKNKLTN 63

Query: 69  RSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTIINSENEAA 128
           RSS  TEEENW++ DEDRDGGNG+R+DRL ++GEDGNTEN+ +DE+ +RTTI+NSENEAA
Sbjct: 64  RSSLMTEEENWKEMDEDRDGGNGERDDRLVNEGEDGNTENIKMDEEGDRTTIVNSENEAA 123

Query: 129 R 130
           R
Sbjct: 124 R 124

[Close]

BLAST of CSPI03G26460 vs. TrEMBL
Match: A0A0A0KHB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G191010 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-15
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 74  TEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTIINSENEAARV 131
           TEEENWED+DEDRDG NG+R+DRL DDGEDGNTEN+N+DEK ++TTI+NSENEAA +
Sbjct: 2   TEEENWEDKDEDRDGENGERDDRLLDDGEDGNTENINMDEKGDKTTIVNSENEAAMI 58

[Close]

BLAST of CSPI03G26460 vs. TrEMBL
Match: A0A0A0K3Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G284410 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 83  DEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTIINSENEAAR 130
           DEDRDGGNG+R+D L DDGED NTEN+N+DE+ ++TTI+NSENEAAR
Sbjct: 82  DEDRDGGNGERDDGLVDDGEDCNTENINMDEEGDKTTIVNSENEAAR 128

[Close]

BLAST of CSPI03G26460 vs. NCBI nr
Match: gi|700203135|gb|KGN58268.1| (hypothetical protein Csa_3G603550 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MEGSMFHDTENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVE 60
           MEGSMFHDTENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVE
Sbjct: 1   MEGSMFHDTENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVE 60

Query: 61  EIKIKITNRSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTI 120
           EIKIKITNRSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTI
Sbjct: 61  EIKIKITNRSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTI 120

Query: 121 INSENEAARV 131
           INSENEAARV
Sbjct: 121 INSENEAARV 130

[Close]

BLAST of CSPI03G26460 vs. NCBI nr
Match: gi|700211509|gb|KGN66605.1| (hypothetical protein Csa_1G639010 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 7.7e-43
Identity = 93/121 (76.86%), Postives = 110/121 (90.91%), Query Frame = 1


Query: 9   TENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVEEIKIKITN 68
           T  +NFEKGECSKESEGINTQIPEY+L FQ+IML NNE+LNKKLDKLIG+VEEIK K+TN
Sbjct: 4   TSTRNFEKGECSKESEGINTQIPEYYLTFQKIMLTNNEELNKKLDKLIGEVEEIKNKLTN 63

Query: 69  RSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTIINSENEAA 128
           RSS  TEEENW++ DEDRDGGNG+R+DRL ++GEDGNTEN+ +DE+ +RTTI+NSENEAA
Sbjct: 64  RSSLMTEEENWKEMDEDRDGGNGERDDRLVNEGEDGNTENIKMDEEGDRTTIVNSENEAA 123

Query: 129 R 130
           R
Sbjct: 124 R 124

[Close]

BLAST of CSPI03G26460 vs. NCBI nr
Match: gi|700191957|gb|KGN47161.1| (hypothetical protein Csa_6G191010 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 74  TEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTIINSENEAARV 131
           TEEENWED+DEDRDG NG+R+DRL DDGEDGNTEN+N+DEK ++TTI+NSENEAA +
Sbjct: 2   TEEENWEDKDEDRDGENGERDDRLLDDGEDGNTENINMDEKGDKTTIVNSENEAAMI 58

[Close]

BLAST of CSPI03G26460 vs. NCBI nr
Match: gi|700189182|gb|KGN44415.1| (hypothetical protein Csa_7G284410 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 83  DEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWERTTIINSENEAAR 130
           DEDRDGGNG+R+D L DDGED NTEN+N+DE+ ++TTI+NSENEAAR
Sbjct: 82  DEDRDGGNGERDDGLVDDGEDCNTENINMDEEGDKTTIVNSENEAAR 128

[Close]

BLAST of CSPI03G26460 vs. NCBI nr
Match: gi|659129587|ref|XP_008464748.1| (PREDICTED: uncharacterized protein LOC103502558 isoform X1 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = 1


Query: 5   MFHDTENKNFEKGECSKESEGINTQIPEYFLKFQEIMLKNNEKLNKKLDKLIGKVEEIKI 64
           +  +  N  FE+GE S++ E  N +IP+YFLKFQE++L NNE LN KLD LI +VE +K 
Sbjct: 109 VMREETNVTFERGESSRQGEASNKKIPDYFLKFQELILTNNECLNNKLDLLIKEVESLKD 168

Query: 65  KITNRSSSKTEEENWEDRDEDRDGGNGKRNDRLADDGEDGNTENLNIDEKWER 118
            +  + +   E  +   RD++ D G             + +T N NI+ + +R
Sbjct: 169 MLKEKVNQIVENNDNIPRDDNNDEG-------------EWDTHNENIENEVQR 208

The following BLAST results are available for this feature:

BLAST of CSPI03G26460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G26460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8U3_CUCSA	9.4e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603550 PE=4 SV=1	[more]
A0A0A0LXM6_CUCSA	5.4e-43	76.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G639010 PE=4 SV=1	[more]
A0A0A0KHB6_CUCSA	2.1e-15	77.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G191010 PE=4 SV=1	[more]
A0A0A0K3Z3_CUCSA	2.3e-09	74.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G284410 PE=4 SV=1	[more]

BLAST of CSPI03G26460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G26460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203135\|gb\|KGN58268.1\|	1.4e-63	100.00	hypothetical protein Csa_3G603550 [Cucumis sativus]	[more]
gi\|700211509\|gb\|KGN66605.1\|	7.7e-43	76.86	hypothetical protein Csa_1G639010 [Cucumis sativus]	[more]
gi\|700191957\|gb\|KGN47161.1\|	3.1e-15	77.19	hypothetical protein Csa_6G191010 [Cucumis sativus]	[more]
gi\|700189182\|gb\|KGN44415.1\|	3.3e-09	74.47	hypothetical protein Csa_7G284410 [Cucumis sativus]	[more]
gi\|659129587\|ref\|XP_008464748.1\|	2.0e-06	36.28	PREDICTED: uncharacterized protein LOC103502558 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G26460.1	CSPI03G26460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 45..65 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G26460	Csa3G603550	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G26460	CsaV3_3G027910	Cucumber (Chinese Long) v3	cpicucB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G26460	Watermelon (Charleston Gray)	cpiwcgB248
CSPI03G26460	Watermelon (97103) v1	cpiwmB253
CSPI03G26460	Cucurbita pepo (Zucchini)	cpecpiB214
CSPI03G26460	Bottle gourd (USVL1VR-Ls)	cpilsiB217
CSPI03G26460	Melon (DHL92) v3.6.1	cpimedB192
CSPI03G26460	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G26460	Silver-seed gourd	carcpiB0574
CSPI03G26460	Silver-seed gourd	carcpiB1026
CSPI03G26460	Watermelon (97103) v2	cpiwmbB230
CSPI03G26460	Wax gourd	cpiwgoB294
CSPI03G26460	Cucumber (Gy14) v1	cgycpiB014
CSPI03G26460	Cucurbita maxima (Rimu)	cmacpiB331
CSPI03G26460	Cucurbita maxima (Rimu)	cmacpiB416
CSPI03G26460	Cucurbita moschata (Rifu)	cmocpiB322
CSPI03G26460	Cucurbita moschata (Rifu)	cmocpiB404