CSPI03G26420 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G26420
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 23822186 .. 23822636 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGGGTGTGGAAAACTTCATCAAATTTGGATTTTCTAATACAACTAGCTCCTATATTCGTTGTCCTTGTTTGAAATGTGGGAATTGTGAAAAACATAGTAGAAAGGGTGTTAGAGATCACTTGTATGTTAATGGTATTGATGAAAGTTATAAAATTTGGTTTTAGCATGGGGAAGAACTTCCTAACTCTTCCTTCTATGATGAATCTTCAAAGTTTGACATCCATACATGTGAAAATCAAGATGTTGGAAGTGTAAAAGAAATAATTGAAGTTGCTCATGAGGAGTATTCAAAAGACCCAACTGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTGTACGAAAGATGCAAAAAGTACACAAAGTTGTCTACTCTAGTGAAATTGTATAATTTAAAAGTTAGGTATGGATGGAGTGATACTAGTTTTTCAGAATTACTTGA

mRNA sequence

ATGAGTTGGGTGTGGAAAACTTCATCAAATTTGGATTTTCTAATACAACTAGCTCCTATATTCGTTGTCCTTCATGGGGAAGAACTTCCTAACTCTTCCTTCTATGATGAATCTTCAAAGTTTGACATCCATACATGTGAAAATCAAGATGTTGGAAGTGTAAAAGAAATAATTGAAGTTGCTCATGAGGAGTATTCAAAAGACCCAACTGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTAATTACTTGA

Coding sequence (CDS)

ATGAGTTGGGTGTGGAAAACTTCATCAAATTTGGATTTTCTAATACAACTAGCTCCTATATTCGTTGTCCTTCATGGGGAAGAACTTCCTAACTCTTCCTTCTATGATGAATCTTCAAAGTTTGACATCCATACATGTGAAAATCAAGATGTTGGAAGTGTAAAAGAAATAATTGAAGTTGCTCATGAGGAGTATTCAAAAGACCCAACTGGATTTGAGAAGTTGCTTATTGATGCTGAAAAACCATTAATTACTTGA
Homology
[Close]
BLAST of CSPI03G26420 vs. NCBI nr
Match: gi|778688593|ref|XP_004142581.2| (PREDICTED: uncharacterized protein LOC101205266 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-24
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1 

Query: 25  HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           HGEELPNSSFYDESSKFD HTCE+QDVGSVKE+IEVAHEEYSKDPTGFEKLLIDAEKPL
Sbjct: 72  HGEELPNSSFYDESSKFDTHTCEDQDVGSVKEMIEVAHEEYSKDPTGFEKLLIDAEKPL 130

[Close]
BLAST of CSPI03G26420 vs. NCBI nr
Match: gi|778688696|ref|XP_011652815.1| (PREDICTED: uncharacterized protein LOC105435113 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-23
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1 

Query: 25  HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           HGEELPNSSFYDESSKFD HTCE+QDVGSVKE+IEVAHEEYSKDPTGFEKLLIDA KPL
Sbjct: 72  HGEELPNSSFYDESSKFDTHTCEDQDVGSVKEMIEVAHEEYSKDPTGFEKLLIDAGKPL 130

[Close]
BLAST of CSPI03G26420 vs. NCBI nr
Match: gi|778708449|ref|XP_011656197.1| (PREDICTED: 36.4 kDa proline-rich protein-like [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 5.5e-21
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 

Query: 25  HGEELPNSSFYDESSKFDIHTCENQDVGSVKEIIEVAHEEYSKDPTGFEKLLIDAEKPL 84
           HGEELPNSSFYDESSKFDIHTCE+QDVGSVKE+IEVAHEEYSKDPTGFEK L + EK L
Sbjct: 72  HGEELPNSSFYDESSKFDIHTCEDQDVGSVKEMIEVAHEEYSKDPTGFEKGLREHEKRL 130

The following BLAST results are available for this feature:
BLAST of CSPI03G26420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G26420 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI03G26420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G26420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688593|ref|XP_004142581.2|2.4e-2494.92PREDICTED: uncharacterized protein LOC101205266 [Cucumis sativus][more]
gi|778688696|ref|XP_011652815.1|1.5e-2393.22PREDICTED: uncharacterized protein LOC105435113 [Cucumis sativus][more]
gi|778708449|ref|XP_011656197.1|5.5e-2188.14PREDICTED: 36.4 kDa proline-rich protein-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G26420.1CSPI03G26420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G26420Cucumber (Gy14) v2cgybcpiB110
CSPI03G26420Silver-seed gourdcarcpiB0574
CSPI03G26420Cucumber (Chinese Long) v3cpicucB144
CSPI03G26420Watermelon (97103) v2cpiwmbB230
CSPI03G26420Wax gourdcpiwgoB294
CSPI03G26420Cucurbita maxima (Rimu)cmacpiB416
CSPI03G26420Cucumber (Chinese Long) v2cpicuB120
CSPI03G26420Cucurbita pepo (Zucchini)cpecpiB214
CSPI03G26420Bottle gourd (USVL1VR-Ls)cpilsiB217