CSPI03G24520 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G24520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 21628918 .. 21629481 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATACTAAGCAAAAACTCACCAAACGTGACTCCAAGATAGGGGACAACTCGGCAGGGCACTCAGGCGCACAACTTGTGGAGGAGGAAGCATGCGTGCGGCTCGAAAAAACGGAGACGACTCGCATAAGAGATCGTGGCTCACACGGCTCGGTGAAGGGGACACGACTCAGACTAACACGGCTCGGTGAAGGGGATGCAACTCAGACTAACACGGCTTGGACGCGTAGCTCACGAAAAGAAGATCGACTCGGCTTGCGTCCTTGATCGTCAAGTGCGACGATGGCTAGCGACACTGTGCGAATGGAGACCACGATCGGTGACGGTTTCGACGGAGGAGGGGGCTACGGGCGACGACGATTTTGATGAAGGAGGGGACGACCGATTTCAAGTGATTTTGAAGACAAGAAGAGATGCTCAACTCAGCAATCAACGAGAAGATTTCGACTAAACGAGCGACGACTAGCTACAAGTTGAGTCTCCGACGATGACTACGTGATGGCAGATGGTGACCTGAAGGATAATGAGGTTAAGTCTCCAAGTTATCATTATTTTTTTTTTCCTTTT

mRNA sequence

ATGCAACTCAGACTAACACGGCTTGGACGCGTAGCTCACGAAAAGAAGATCGACTCGGCTTGCGTCCTTGATCGTCAAGTGCGACGATGGCTAGCGACACTGTGCGAATGGAGACCACGATCGGTGACGGTTTCGACGGAGGAGGGGGCTACGGGCGACGACGATTTTGATGAAGGAGGGGACGACCGATTTCAAGTGATTTTGAAGACAAGAAGAGATGCTCAACTCAGCAATCAACGAGAAGATTTCGACTAA

Coding sequence (CDS)

ATGCAACTCAGACTAACACGGCTTGGACGCGTAGCTCACGAAAAGAAGATCGACTCGGCTTGCGTCCTTGATCGTCAAGTGCGACGATGGCTAGCGACACTGTGCGAATGGAGACCACGATCGGTGACGGTTTCGACGGAGGAGGGGGCTACGGGCGACGACGATTTTGATGAAGGAGGGGACGACCGATTTCAAGTGATTTTGAAGACAAGAAGAGATGCTCAACTCAGCAATCAACGAGAAGATTTCGACTAA
Homology
[Close]
BLAST of CSPI03G24520 vs. TrEMBL
Match: A0A0A0L8I3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G516520 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MQLRLTRLGRVAHEKKIDSACVLDRQVRRWLATLCEWRPRSVTVSTEEGATGDDDFDEGG 60
          MQLRLTRLGRVAH+KKIDSACVLDRQVRRWLATLCEWRPRSVTVSTEEGATGDDDFDEGG
Sbjct: 1  MQLRLTRLGRVAHKKKIDSACVLDRQVRRWLATLCEWRPRSVTVSTEEGATGDDDFDEGG 60

Query: 61 DDRFQVILKTRRDAQLSNQREDFD 85
          DDRFQVILKTRRDAQLSNQREDFD
Sbjct: 61 DDRFQVILKTRRDAQLSNQREDFD 84

[Close]
BLAST of CSPI03G24520 vs. NCBI nr
Match: gi|700202980|gb|KGN58113.1| (hypothetical protein Csa_3G516520 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MQLRLTRLGRVAHEKKIDSACVLDRQVRRWLATLCEWRPRSVTVSTEEGATGDDDFDEGG 60
          MQLRLTRLGRVAH+KKIDSACVLDRQVRRWLATLCEWRPRSVTVSTEEGATGDDDFDEGG
Sbjct: 1  MQLRLTRLGRVAHKKKIDSACVLDRQVRRWLATLCEWRPRSVTVSTEEGATGDDDFDEGG 60

Query: 61 DDRFQVILKTRRDAQLSNQREDFD 85
          DDRFQVILKTRRDAQLSNQREDFD
Sbjct: 61 DDRFQVILKTRRDAQLSNQREDFD 84

The following BLAST results are available for this feature:
BLAST of CSPI03G24520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G24520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8I3_CUCSA2.1e-4098.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G516520 PE=4 SV=1[more]
BLAST of CSPI03G24520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G24520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202980|gb|KGN58113.1|3.0e-4098.81hypothetical protein Csa_3G516520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G24520.1CSPI03G24520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G24520Csa3G516520Cucumber (Chinese Long) v2cpicuB128
CSPI03G24520CsaV3_3G026290Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G24520Cucumber (Chinese Long) v2cpicuB120
CSPI03G24520Melon (DHL92) v3.6.1cpimedB247
CSPI03G24520Cucumber (Gy14) v2cgybcpiB110
CSPI03G24520Wax gourdcpiwgoB274
CSPI03G24520Cucumber (Gy14) v1cgycpiB451