CSPI03G23480 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G23480
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ty1-copia retrotransposon protein
Location	Chr3 : 20401063 .. 20402760 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCACAATTCGAACAAGTTCTCTAGTCGTCCCAAATTGTCATTCTTCCACGTTCCACGCCCCTGTTCGTCTGCCCGAATTGATGCTCATGAGACTGCCAACTTTTCCTTTTTGCCTTCCCTTTCTTTAAAATTTCAAATGGCAGTTCAGTGGGACTCCATTATAAATACAACCCTACCCGAGTTCTTCTTCATTCATTCCTCATACACTCCACAAAACCTCTCAATCTCTCTACCTCTACAAATAGTTCTGAGCAAGTTCATTCATTGTTTCTATTCCTATTTCAGGCGAGTGCACGTTAGAAGTAGGGAGTTGTGTTAACCTTGGGGAGCAACCGATATTACAATTAGCACCATGGTCTGGTCGAATTTGCATTAGGGCAGTGATTCGTCATGGCGCAACAAGTCATTTTGATCATCATTTACGTTATTAACAATCTGAAAGTAAATTACAATAATAATCCAAACCAACAAAGTCCTACTAGACCTGTACAAATTAGAGCCACTTGACAGAACAAACTACAATCGCTTGTCCCAAAAAAAAAAAAAAAAACTTTTTTTAACAGCTCGAAGTCGACTACGTTTTCACCGTCAAACCACCAACCGATCCTCTAGCACCTTCTGATCCAAAATCATCCAGGAACCCCTTGCCGTCACTACCAACCGGGTAAAGAAAGCGTTTGCAACTGATTCCGAGAAGCACAAGAATGACAATATGACAGTTCGTGGACATTTGTTGAACCATATGTCAGATCTGATGTTTAACCTATTTGTAACCCAAGAATCTGCCAAAGAATCTGCCAAGGACATCTGGTGCATTCTAGAACCACATTATGGTGGAGACGACTCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTACAGTTCCAGATGACAGATGACAAGCCAGTTGTGGAACAGATAAATAAGTATGAAAATCTGGTGGCAAATGTCCTATCAGAAGGTATGAAGATGTGTGAGATACTTCAAGCTATGTTTTGATGGAAAAATTCCCTCCCTCTTGTAGCGACTACCAAAATCACCTGAAGCACAAGAAGAAAGATCTGAAACTTCAAGATTTGATCAGCCACATGCGTACAGAAGAAGCCAACAAATTAAAAGATAAGTTAGCTTCCAAAAATGTAAATTCAGTTAATGCTAACTTGGTTGAGTCTTCCTCTGTAAACAGAGACAAGTCAAAACATGATAAAAGGCAGAATGGAAGAACCTCAGAAAAGGTACAGTTCAAGGCTCATGTGGGAAAAATCAAGAAAAATAAATTCATCTCTAATGTCTGCGAAAAGGAAGAACACAAATCCTACCATGCAATCAAAGGAAGGGGAGATCAAACAACCAAAAACCAACACCTCAAGCCAACCTTGCTGAACAAGATGATGAAGTCATAGCTGCTGTTGTGGAAGTCAACCTAATTAAAAACAAGACTGATTGGATCCTGGAAACTGAAGCCTCTAGACACTTCTGCACCAATCAAGAACTTCTTCATGACTACAAGGACATTGCTGATGGAGAATACGTGTTCATGGAAAACTCAGTCACCGTAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAATTAACTTCTGAAAAAACTTTATCCTTAAGTAATATTTTATATGTCCCTTCCCTATGCAGGAACTTAGTGTCTGGGAGTTTGTTGAATCGGGTGAGTCTTAA

mRNA sequence

ATGCGTCACAATTCGAACAAGTTCTCTAGTCGTCCCAAATTGTCATTCTTCCACGTTCCACGCCCCTGCGAGTGCACGTTAGAAGTAGGGAGTTGTGTTAACCTTGGGGAGCAACCGATATTACAATTAGCACCATGGTCTGGTCGAATTTGCATTAGGGCAGAACCCCTTGCCGTCACTACCAACCGGGTAAAGAAAGCGTTTGCAACTGATTCCGAGAAGCACAAGAATGACAATATGACAGTTCGTGGACATTTGTTGAACCATATGTCAGATCTGATGTTTAACCTATTTGTAACCCAAGAATCTGCCAAAGAATCTGCCAAGGACATCTGGTGCATTCTAGAACCACATTATGGTGGAGACGACTCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTACAGTTCCAGATGACAGATGACAAGCCAGTTGTGGAACAGATAAATAACGACTACCAAAATCACCTGAAGCACAAGAAGAAAGATCTGAAACTTCAAGATTTGATCAGCCACATGCGTACAGAAGAAGCCAACAAATTAAAAGATAAGTTAGCTTCCAAAAATGTAAATTCAGTTAATGCTAACTTGGTTGAGTCTTCCTCTGTAAACAGAGACAAGTCAAAACATGATAAAAGGCAGAATGGAAGAACCTCAGAAAAGGGGAGATCAAACAACCAAAAACCAACACCTCAAGCCAACCTTGCTGAACAAGATGATGAAGTCATAGCTGCTGTTGTGGAAGTCAACCTAATTAAAAACAAGACTGATTGGATCCTGGAAACTGAAGCCTCTAGACACTTCTGCACCAATCAAGAACTTCTTCATGACTACAAGGACATTGCTGATGGAGAATACGTGTTCATGGAAAACTCAGTCACCGTAGGAGTAATCGGGAAAGGGAAGGAACTTAGTGTCTGGGAGTTTGTTGAATCGGGTGAGTCTTAA

Coding sequence (CDS)

ATGCGTCACAATTCGAACAAGTTCTCTAGTCGTCCCAAATTGTCATTCTTCCACGTTCCACGCCCCTGCGAGTGCACGTTAGAAGTAGGGAGTTGTGTTAACCTTGGGGAGCAACCGATATTACAATTAGCACCATGGTCTGGTCGAATTTGCATTAGGGCAGAACCCCTTGCCGTCACTACCAACCGGGTAAAGAAAGCGTTTGCAACTGATTCCGAGAAGCACAAGAATGACAATATGACAGTTCGTGGACATTTGTTGAACCATATGTCAGATCTGATGTTTAACCTATTTGTAACCCAAGAATCTGCCAAAGAATCTGCCAAGGACATCTGGTGCATTCTAGAACCACATTATGGTGGAGACGACTCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTACAGTTCCAGATGACAGATGACAAGCCAGTTGTGGAACAGATAAATAACGACTACCAAAATCACCTGAAGCACAAGAAGAAAGATCTGAAACTTCAAGATTTGATCAGCCACATGCGTACAGAAGAAGCCAACAAATTAAAAGATAAGTTAGCTTCCAAAAATGTAAATTCAGTTAATGCTAACTTGGTTGAGTCTTCCTCTGTAAACAGAGACAAGTCAAAACATGATAAAAGGCAGAATGGAAGAACCTCAGAAAAGGGGAGATCAAACAACCAAAAACCAACACCTCAAGCCAACCTTGCTGAACAAGATGATGAAGTCATAGCTGCTGTTGTGGAAGTCAACCTAATTAAAAACAAGACTGATTGGATCCTGGAAACTGAAGCCTCTAGACACTTCTGCACCAATCAAGAACTTCTTCATGACTACAAGGACATTGCTGATGGAGAATACGTGTTCATGGAAAACTCAGTCACCGTAGGAGTAATCGGGAAAGGGAAGGAACTTAGTGTCTGGGAGTTTGTTGAATCGGGTGAGTCTTAA

Homology

[Close]

BLAST of CSPI03G23480 vs. TrEMBL
Match: E5GBG5_CUCME (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.9e-62
Identity = 156/316 (49.37%), Postives = 180/316 (56.96%), Query Frame = 1


Query: 61  TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
           T++VKK    D EK+  DN TVRGHLLNHMSD MF+LFV Q+SAK    DIW  LE  YG
Sbjct: 76  TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK----DIWSTLESRYG 135

Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
           GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+                              
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEILQANVLLEKFP 195

Query: 181 ---NDYQNHLKHKKKDLKLQDL------------ISHMRTEEANKLKDKLASKNVNSVNA 240
              NDY+NHLKHKKKDLKL +L               + ++  N       S N N V +
Sbjct: 196 PSWNDYRNHLKHKKKDLKLHELISHMRTEEANRLKDKLASQNLN-------SVNANLVES 255

Query: 241 NLVESSSVNRDKSKHDK------------------------RQNGRTS-----EKGRSNN 300
           + V      ++K    K                        R+ G  S      KGR + 
Sbjct: 256 SFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCRKEGHKSYQCNQRKGRPS- 315

Query: 301 QKPTPQANLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEY 303
           QKPTPQANLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D  DGE 
Sbjct: 316 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTVDGEC 375

[Close]

BLAST of CSPI03G23480 vs. TrEMBL
Match: Q69FA4_PHAVU (Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA4 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-18
Identity = 85/307 (27.69%), Postives = 144/307 (46.91%), Query Frame = 1


Query: 66  KAFATDSEKHKND----NMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYGG 125
           K  +T + K  +D    N   R  LL+ +S+ +F+++ + ++AK    DIW  L   Y  
Sbjct: 68  KPDSTTAAKQVDDWIHANKVCRHTLLSVLSNDLFDVYASYKNAK----DIWDSLILKYTA 127

Query: 126 DDSGRKKYVVGKWLQFQMTDDK----------PVVEQINN-------------------- 185
           +D  R+++V+ K+ +++M   K           ++E I                      
Sbjct: 128 EDIVRQRFVIAKYYRWEMIKGKDIKIQINEYHKLIEDIKTESIKLPDEFVSELLIEKLPQ 187

Query: 186 ---DYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDKS 245
              DY+  LKH++K + L DLI+H+  E+ N+ +   A     S  AN++E     +   
Sbjct: 188 SWTDYKQQLKHRQKQMSLSDLITHIIIEDTNRKECAAAKAKALSAKANVIEDKPAPKRYE 247

Query: 246 K---HDKRQNGRTS----------EKG-----------------RSNNQKPTPQANLAEQ 305
           K   H K+ N + S          +KG                 R+ N  P P+ANLAE 
Sbjct: 248 KKFDHKKKPNNKFSRPSGTNPTFKKKGNCFVCGKPGHHAPQCRHRAKNDYP-PKANLAEG 307

[Close]

BLAST of CSPI03G23480 vs. TrEMBL
Match: Q94FM0_CITPA (Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 75/294 (25.51%), Postives = 144/294 (48.98%), Query Frame = 1


Query: 64  VKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYGGDD 123
           ++ A A D+  H +     + +++N +SD ++N+++     K++AK++W  L+  Y  +D
Sbjct: 84  IQVASAIDAWHHSD--FLCKNYVMNGLSDSLYNVYI----GKKTAKELWESLDRKYKTED 143

Query: 124 SGRKKYVVGKWLQFQMTDDKPVVEQINN-------------------------------- 183
           +G KK+VVG++L F+M D K V+ Q+                                  
Sbjct: 144 AGTKKFVVGRFLDFKMVDSKTVISQVQELQIILSEILAEGMHLSETFQVAAIIEKLPPAW 203

Query: 184 -DYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDKSKH 243
            D++++LKHK+K++ ++ L+  +R EE N+  +++ +  ++   AN VE     + K   
Sbjct: 204 KDFKSYLKHKQKEMNIEGLVVKLRIEEDNRNAERIGA--ISMAKANFVEHGPKKKKKKLG 263

Query: 244 DKR--QNGRTSEKGRSNN-------------QKPTPQANLAE------QDDEVIAAVVEV 303
            K      +T  +G+  N              K   +AN+ E       D  + A V+EV
Sbjct: 264 PKGGISKKQTKFQGKCYNCDKMGHKASDCRLPKKKREANVVENITQHVSDINLSAVVLEV 323

[Close]

BLAST of CSPI03G23480 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 79/299 (26.42%), Postives = 140/299 (46.82%), Query Frame = 1


Query: 69  ATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYGGDDSGRKK 128
           A D+ KH +     R +++N ++D ++N++    S K++AK++W  L+  Y  +D+G KK
Sbjct: 88  AIDAWKHSD--FLCRNYVMNGLTDSLYNVY----SDKKTAKELWESLDRKYKTEDAGAKK 147

Query: 129 YVVGKWLQFQMTDDKPVVEQI-----------------NNDYQ-----NHLKHKKKDLK- 188
           +VVG++L ++M D K VV Q+                 +  +Q       L    KD K 
Sbjct: 148 FVVGRFLDYKMVDSKTVVSQVQELQVILHEIHADGMMLSETFQVAAIIEKLPPAWKDFKN 207

Query: 189 ----------LQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDKSKHDKRQN 248
                     ++DLI  +R EE N+  +K  +  +N   AN VE    ++ K+ ++K + 
Sbjct: 208 YLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAQANFVEHGQSSKAKTNNNKGKG 267

Query: 249 GRTSEKG-------------------------RSNNQKPTPQANLAE------QDDEVIA 303
            +   KG                         R   +    +AN+ +       D ++  
Sbjct: 268 SKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDNITKNVSDIDLTT 327

[Close]

BLAST of CSPI03G23480 vs. TrEMBL
Match: A0A151TB57_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_018882 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 55/186 (29.57%), Postives = 93/186 (50.00%), Query Frame = 1


Query: 152 DYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDKSKHD 211
           DY+ HLKH+ K + L DLI+H+  E+AN+ +   A     +  AN+V+      +K ++D
Sbjct: 185 DYKQHLKHRHKQMSLSDLITHIIIEDANRKECAAAKAKSLAAKANVVQVQE-QPNKKRYD 244

Query: 212 KRQNGRTSE--------------------------------KGRSNNQKPTPQANLAEQD 271
           +++N   S+                                +   N+  P  + NLAE D
Sbjct: 245 QKKNKYNSKNSFPRATNPVFKKKGNCFVCGKPGHHAPQCRFRATRNDNPPKAKVNLAEGD 304

Query: 272 DEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADG-EYVFMENSVTVGVI 305
           D + A V +VN++ N + W++++ A+RH C N+ +   Y  + DG E V++ +S T  V+
Sbjct: 305 DIIAAVVSQVNIVTNVSKWVVDSGATRHICANRNVFSSYTAVEDGEEQVYLGDSRTTPVL 364

[Close]

BLAST of CSPI03G23480 vs. NCBI nr
Match: gi|659102488|ref|XP_008452160.1| (PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo])

HSP 1 Score: 322.0 bits (824), Expect = 1.2e-84
Identity = 179/283 (63.25%), Postives = 200/283 (70.67%), Query Frame = 1


Query: 61  TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
           T++VKK    D EK+  DN TVRGHLLNHMSD MFNLFV Q+  K    DIW  LE  YG
Sbjct: 76  TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFNLFVVQKFTK----DIWSTLESQYG 135

Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
           GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+                              
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVMSEGMKMYEILQANVLLEKFP 195

Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
              NDY NHLKHKKKDLKLQ+LISHM TEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYCNHLKHKKKDLKLQELISHMGTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255

Query: 241 SKHDKRQNGRTSEKG---------RSNNQKPTPQANLAEQDDEVIAAVVEVNLIKNKTDW 300
           +K +K   G+ SEK          +    KPTPQANLAEQD E+IAA+VE NLI+NKTDW
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLKPTPQANLAEQDSEIIAAIVEANLIENKTDW 315

Query: 301 ILETEASRHFCTNQELLHDYKDIADGEYVFMENSVTVGVIGKG 302
           IL+T ASRHFCTN+ELLHDY+D ADGE VFM NS T GVIGKG
Sbjct: 316 ILDTGASRHFCTNRELLHDYEDTADGECVFMGNSATAGVIGKG 354

[Close]

BLAST of CSPI03G23480 vs. NCBI nr
Match: gi|659090008|ref|XP_008445782.1| (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 3.3e-63
Identity = 144/261 (55.17%), Postives = 176/261 (67.43%), Query Frame = 1


Query: 61  TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
           T +VK     D EK+  DN TVRGHLLNHMSD MF+LFV Q+SAK    DIW  LE  YG
Sbjct: 76  TEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK----DIWSTLESRYG 135

Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQINNDYQNHLKH------KKKDLKLQDLISHMR 180
           GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+ +Y+N + +      K  ++   ++I   +
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIH-EYENLVANVLSEGMKMCEILQANVIDRTK 195

Query: 181 TEEANKLKDKLASKNVNSVNANLVESSSVNRDKSKHDKRQNGRTSEKGRSNNQKPTPQAN 240
            E+ +K K+    +   +    + +   V     K   +       KGR + QKPTPQAN
Sbjct: 196 QEKGHKGKNS-EKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRPS-QKPTPQAN 255

Query: 241 LAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSVT 300
           LAEQD ++IA +VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS T
Sbjct: 256 LAEQDSKIIATIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSAT 315

Query: 301 VGVIGKGKELSVWEFVESGES 316
            GVIGKGKE  VWE VESG +
Sbjct: 316 AGVIGKGKEPGVWESVESGRA 329

[Close]

BLAST of CSPI03G23480 vs. NCBI nr
Match: gi|307135946|gb|ADN33807.1| (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 247.7 bits (631), Expect = 2.8e-62
Identity = 156/316 (49.37%), Postives = 180/316 (56.96%), Query Frame = 1


Query: 61  TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
           T++VKK    D EK+  DN TVRGHLLNHMSD MF+LFV Q+SAK    DIW  LE  YG
Sbjct: 76  TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK----DIWSTLESRYG 135

Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
           GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+                              
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEILQANVLLEKFP 195

Query: 181 ---NDYQNHLKHKKKDLKLQDL------------ISHMRTEEANKLKDKLASKNVNSVNA 240
              NDY+NHLKHKKKDLKL +L               + ++  N       S N N V +
Sbjct: 196 PSWNDYRNHLKHKKKDLKLHELISHMRTEEANRLKDKLASQNLN-------SVNANLVES 255

Query: 241 NLVESSSVNRDKSKHDK------------------------RQNGRTS-----EKGRSNN 300
           + V      ++K    K                        R+ G  S      KGR + 
Sbjct: 256 SFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCRKEGHKSYQCNQRKGRPS- 315

Query: 301 QKPTPQANLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEY 303
           QKPTPQANLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D  DGE 
Sbjct: 316 QKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTVDGEC 375

[Close]

BLAST of CSPI03G23480 vs. NCBI nr
Match: gi|659113205|ref|XP_008456453.1| (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 214.5 bits (545), Expect = 2.6e-52
Identity = 121/194 (62.37%), Postives = 137/194 (70.62%), Query Frame = 1


Query: 61  TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
           T++VKK    D EK+  DN TVRGHLLNHMSD MF+LFV Q+SAK    DIW  LE  YG
Sbjct: 76  TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK----DIWSTLESRYG 135

Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
           GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+                              
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEILQANVLLENFP 195

Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 222
              NDY+NHLKHKKKDLKLQ+LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255

[Close]

BLAST of CSPI03G23480 vs. NCBI nr
Match: gi|731352142|ref|XP_010687387.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104901497 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 203.8 bits (517), Expect = 4.6e-49
Identity = 119/260 (45.77%), Postives = 161/260 (61.92%), Query Frame = 1


Query: 74  KHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYGGDDSGRKKYVVGK 133
           K++ DN TVR HLLN M + +F+LF+  +S+K     IW  LE  YG DD+G++KYVV K
Sbjct: 352 KYEKDNKTVRFHLLNLMINNLFDLFMVYKSSKL----IWEALEKKYGADDAGKQKYVVRK 411

Query: 134 WLQFQMTDDKPVVEQ----------INND----------------------YQNHLKHKK 193
           WL FQM DDKPV++Q          IN D                      ++N+LKH+K
Sbjct: 412 WLSFQMVDDKPVMDQVPYENLCDDVINEDMKICEVFQANVLLEKFPPSWREFRNNLKHRK 471

Query: 194 KDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDKSKHDKRQNGRTSEK 253
           + + L++LI+HMR EEAN++KD   S  VN   ANLVES+S +    K           K
Sbjct: 472 EFMSLRELINHMRIEEANRIKDNQDSILVNVTKANLVESASASSGSDKF--------RGK 531

Query: 254 GRSNNQKPTPQANLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDI 302
           G+ + QK TP ANLA  DD ++A VVE NLI+N +DWIL+T  SRHFC+N+ELLHD++D 
Sbjct: 532 GKKSVQKETPHANLAISDDVIVAVVVETNLIENNSDWILDTGDSRHFCSNKELLHDFQDA 591

The following BLAST results are available for this feature:

BLAST of CSPI03G23480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G23480 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBG5_CUCME	1.9e-62	49.37	Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
Q69FA4_PHAVU	3.8e-18	27.69	Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA4 PE=4 SV=1	[more]
Q94FM0_CITPA	4.2e-17	25.51	Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1	[more]
A5AMN2_VITVI	2.1e-16	26.42	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1	[more]
A0A151TB57_CAJCA	3.1e-12	29.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CSPI03G23480 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G23480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102488\|ref\|XP_008452160.1\|	1.2e-84	63.25	PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo]	[more]
gi\|659090008\|ref\|XP_008445782.1\|	3.3e-63	55.17	PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]	[more]
gi\|307135946\|gb\|ADN33807.1\|	2.8e-62	49.37	ty1-copia retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659113205\|ref\|XP_008456453.1\|	2.6e-52	62.37	PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]	[more]
gi\|731352142\|ref\|XP_010687387.1\|	4.6e-49	45.77	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104901497 [Beta vulga...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G23480.1	CSPI03G23480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 78..302 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G23480	Melon (DHL92) v3.6.1	cpimedB195
CSPI03G23480	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G23480	Silver-seed gourd	carcpiB0939
CSPI03G23480	Silver-seed gourd	carcpiB1053
CSPI03G23480	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G23480	Watermelon (97103) v2	cpiwmbB225
CSPI03G23480	Cucumber (Gy14) v1	cgycpiB369
CSPI03G23480	Cucurbita maxima (Rimu)	cmacpiB015
CSPI03G23480	Cucurbita maxima (Rimu)	cmacpiB460
CSPI03G23480	Cucurbita moschata (Rifu)	cmocpiB006
CSPI03G23480	Cucurbita moschata (Rifu)	cmocpiB448
CSPI03G23480	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G23480	Melon (DHL92) v3.5.1	cpimeB201
CSPI03G23480	Watermelon (Charleston Gray)	cpiwcgB242
CSPI03G23480	Watermelon (97103) v1	cpiwmB247
CSPI03G23480	Cucurbita pepo (Zucchini)	cpecpiB549
CSPI03G23480	Cucurbita pepo (Zucchini)	cpecpiB779
CSPI03G23480	Bottle gourd (USVL1VR-Ls)	cpilsiB194