CSPI03G23140 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G23140
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial
Location	Chr3 : 19963073 .. 19964381 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAATCTGCTCTAAGCTCTTTGGAAAGAATCATGAGAAAGTTCTTTTGGAAAGGAAACAAGGTAGGAAAGCTAAACCACCTAGTAAAATGGGATGCTGTAATTAAATCCTACAAAGATGGAGGACTTAGTTTGGGCAAGTTGAAGCACAAGAATATGGCCCTATTGTCTAAGTGGGGATGGCGTTTCTCAAAAGAACAAAATTCACTTTGGTGTCAAGTGATCATAAGCATTCATGGAAGTAGTACTTTCAACTGGCATTCAAATGAAAAAGAAACCGTGAGTCTAAGAAGTCCTTGGATTAGCATATCAAGGCAATAGCGCAAAATTGACTCATTGGCTCTTTTCAAATTAGGTGATGGCAGCAAAATATTGTTTTGGAAGCACCCTTGGATGGACATTATCACTTTGGAGCGTAAATTTCCAAGATTGGTTAGGATCGCACTCAATCCAAATGGGTCTGTTTCAAATCATTGGGACTCTTCAACCAACTCTTGGTCCATCTATTTCAGAAGATCGCTAAATGATGAGGAAATTTTAGATTTTCGGACCTTGTTGAGTCAGATTTCTCCTTCACAGTCAGCCTCATTTCCAGATCAAAGGTTTTGGTCCCTTGAAACCTCAGGTTCCTTCTTGGTAAAATCACTGGTTAAGCATCTTTCGACATCTTCTCCATTGGAAAGTTTTTTGTACAAAAGGTTTTGGAAATCTAACAGTCCAAGAAGGATAAATATTTCCATATGGATTATGCTCTTCGAAAATTTAGACTGTGCCTCAGTACTTCAAAGAAAGCTTTCCTCCCATGCCCTCTCACCTTATGTCTGCCCCCTTTGTGTTAATAACATGGAAAACATCCGGCATATTTTATTTGATTGTGTCTTTGGTTTTAAATGTTGGGTCCACCTTCTCCAAGCATTCAATTTTTGTTGGGTTTTTTATCATGTTTTTAAGAACAATGTGTCTCAAATTCTTGCTGGTCCAGACTTGAAGAAGAAGACAGCGGAACTATAGTGGGCAAACGCAGTAAAAGCACTTTTAGCTGAAATTTGGTTTGAAAGAAACCAAAGAGTCTTCCATGATAACTCATTGACTTGGATGGAACGCTATGATTCTGCTCGTTTGAATGCATCTTCATGGTGCTTATTATCTAAATATTTTCAAGATTACTCTTCGCAGGAGATTGTTCTAAATTGGCCAGCCTTTATAGTCTCCCCACCTTGAAGTTCTAGATTATCATGTCTCCCGGATCAGCCTTCTACTTCAATATGTTTTTGCTCAATCAAGGACTCAGCTTGGTGCCTTGTGA

mRNA sequence

ATGCCAGAATCTGCTCTAAGCTCTTTGGAAAGAATCATGAGAAAGTTCTTTTGGAAAGGAAACAAGGTAGGAAAGCTAAACCACCTAGTAAAATGGGATGCTGTAATTAAATCCTACAAAGATGGAGGACTTAGTTTGGGCAAGTTGAAGCACAAGAATATGGCCCTATTGTCTAAGTGGGGATGGCGTTTCTCAAAAGAACAAAATTCACTTTGGTGTCAAGTGATCATAAGCATTCATGGAAGTAGTACTTTCAACTGGCATTCAAATGAAAAAGAAACCCACCCTTGGATGGACATTATCACTTTGGAGCGTAAATTTCCAAGATTGGTTAGGATCGCACTCAATCCAAATGGGTCTGTTTCAAATCATTGGGACTCTTCAACCAACTCTTGGTCCATCTATTTCAGAAGATCGCTAAATGATGAGGAAATTTTAGATTTTCGGACCTTGTTGAGTCAGATTTCTCCTTCACAGTCAGCCTCATTTCCAGATCAAAGGTTTTGGTCCCTTGAAACCTCAGGTTCCTTCTTGGTAAAATCACTGGTTAAGCATCTTTCGACATCTTCTCCATTGGAAAGTTTTTTGTACAAAAGGTTTTGGAAATCTAACAGTCCAAGAAGGATAAATATTTCCATATGGATTATGCTCTTCGAAAATTTAGACTGTGCCTCAGTACTTCAAAGAAAGCTTTCCTCCCATGCCCTCTCACCTTATGTCTGCCCCCTTTGTAACAATGTGTCTCAAATTCTTGCTGGTCCAGACTTGAAGAAGAAGACAGCGGAACTATACCTTCTACTTCAATATGTTTTTGCTCAATCAAGGACTCAGCTTGGTGCCTTGTGA

Coding sequence (CDS)

ATGCCAGAATCTGCTCTAAGCTCTTTGGAAAGAATCATGAGAAAGTTCTTTTGGAAAGGAAACAAGGTAGGAAAGCTAAACCACCTAGTAAAATGGGATGCTGTAATTAAATCCTACAAAGATGGAGGACTTAGTTTGGGCAAGTTGAAGCACAAGAATATGGCCCTATTGTCTAAGTGGGGATGGCGTTTCTCAAAAGAACAAAATTCACTTTGGTGTCAAGTGATCATAAGCATTCATGGAAGTAGTACTTTCAACTGGCATTCAAATGAAAAAGAAACCCACCCTTGGATGGACATTATCACTTTGGAGCGTAAATTTCCAAGATTGGTTAGGATCGCACTCAATCCAAATGGGTCTGTTTCAAATCATTGGGACTCTTCAACCAACTCTTGGTCCATCTATTTCAGAAGATCGCTAAATGATGAGGAAATTTTAGATTTTCGGACCTTGTTGAGTCAGATTTCTCCTTCACAGTCAGCCTCATTTCCAGATCAAAGGTTTTGGTCCCTTGAAACCTCAGGTTCCTTCTTGGTAAAATCACTGGTTAAGCATCTTTCGACATCTTCTCCATTGGAAAGTTTTTTGTACAAAAGGTTTTGGAAATCTAACAGTCCAAGAAGGATAAATATTTCCATATGGATTATGCTCTTCGAAAATTTAGACTGTGCCTCAGTACTTCAAAGAAAGCTTTCCTCCCATGCCCTCTCACCTTATGTCTGCCCCCTTTGTAACAATGTGTCTCAAATTCTTGCTGGTCCAGACTTGAAGAAGAAGACAGCGGAACTATACCTTCTACTTCAATATGTTTTTGCTCAATCAAGGACTCAGCTTGGTGCCTTGTGA

Homology

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BLAST of CSPI03G23140 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 1   MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
           +P+S L+ L+++ R F W      K  HLVKW  V    K+GGL +   K  N AL+SK 
Sbjct: 58  LPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKV 117

Query: 61  GWRFSKEQNSLWCQVI 77
           GWR  +E+NSLW  V+
Sbjct: 118 GWRLLQEKNSLWTLVL 133

[Close]

BLAST of CSPI03G23140 vs. TrEMBL
Match: A5BPI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.5e-37
Identity = 99/282 (35.11%), Postives = 145/282 (51.42%), Query Frame = 1


Query: 1    MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
            +P S    +ER+ R F W G   GK +HLV W+ V KS   GGL LG++  +N ALL KW
Sbjct: 925  IPASVAGRIERLQRDFLWSGVGEGKRDHLVSWBVVCKSKMKGGLGLGRISLRNSALLGKW 984

Query: 61   GWRFSKEQNSLWCQVIISIHGSSTFNWHSNE--KETH--PWMDIITLER----------- 120
             WR+ +E ++LW QVI+SI+GS +  W +N   + +H  PW  I  + +           
Sbjct: 985  LWRYPREGSALWHQVILSIYGSHSNGWDANTXVRWSHRCPWKAIAQVFQDFSKFTRFIVG 1044

Query: 121  --------------------KFPRLVRIALNPNGSVSNHWDSSTN-SWSIYFRRSLNDEE 180
                                +FPRL+R+ ++ N  +S+   S+   SW+  FRR+L+D E
Sbjct: 1045 DGDRIRFWEDLWWGDQSLGVRFPRLLRVVMDKNILISSILGSTRPFSWNFNFRRNLSDSE 1104

Query: 181  ILDFRTLLSQISPSQ-SASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLES-FLYKRFWK 240
            I    +L+  +     S S PD+R WSL +SG F VKS    LS  S L S F  K  W 
Sbjct: 1105 IEKVESLMQSLDHIHLSPSVPDKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWN 1164

Query: 241  SNSPRRINISIWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
            S  P +I   +W++  + ++   +LQ +    ALSP +C LC
Sbjct: 1165 SQVPFKIKFFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLC 1206

[Close]

BLAST of CSPI03G23140 vs. TrEMBL
Match: A5BRJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014785 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 97/272 (35.66%), Postives = 140/272 (51.47%), Query Frame = 1


Query: 1   MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
           +P S  +  ER+ R F W G   GK +HLV+W+AV K    GGL +GK+  +N ALL KW
Sbjct: 540 IPASVAAKRERLQRDFLWSGVGEGKRDHLVRWEAVCKPRIIGGLGIGKIPLRNRALLGKW 599

Query: 61  GWRFSKEQNSLWCQVIISIHGSSTFNWHSNE---------------------KETHPWMD 120
            WRF +E  SLW QVI+SI+G+ +  W +N                      +    W D
Sbjct: 600 LWRFPRESTSLWHQVILSIYGTHSNGWDANTIAIAQGFQDFSKYTRLIVGNGERIRFWED 659

Query: 121 II----TLERKFPRLVRIALNPNGSVSNHWDSSTN-SWSIYFRRSLNDEEILDFRTLLSQ 180
           +     TL+ ++PRL R+ ++ N  +S+   SS   SW+  FRR+L D EI D   L+  
Sbjct: 660 LWWGDQTLKDQYPRLFRVVMDKNIPISSILGSSRPFSWNFNFRRNLTDPEIEDLERLMHS 719

Query: 181 IS-PSQSASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLESFLYKRF-WKSNSPRRINIS 240
           +   + S S  D R WSL +SG F VKS    LS       F   +F WKS  P ++   
Sbjct: 720 LDCMNLSTSASDARSWSLCSSGLFTVKSFFTALSQMPDSSPFFPTKFVWKSQVPFKVKAF 779

Query: 241 IWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
           IW++  + ++   +LQ +    A+SP +C LC
Sbjct: 780 IWLVAHKKVNTNDLLQLRRPHKAISPDICKLC 811

[Close]

BLAST of CSPI03G23140 vs. TrEMBL
Match: A5BN97_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009103 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 97/282 (34.40%), Postives = 142/282 (50.35%), Query Frame = 1


Query: 1   MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
           +P S  + +ERI R F W G   GK +HLV+W+AV KS   GGL +GK+  +N ALL KW
Sbjct: 511 IPASVAAKIERIQRDFLWSGVGEGKRDHLVRWEAVCKSRVIGGLGIGKIPLRNRALLGKW 570

Query: 61  GWRFSKEQNSLWCQVIISIHGSST--------FNWH-----------------------S 120
            WRF +E  SLW QVI+SI+G+ +          W                         
Sbjct: 571 LWRFPRESTSLWHQVILSIYGTHSNGWDANTIVRWSHRCPWKAIAQGFQDFSKYTRFIVG 630

Query: 121 NEKETHPWMDII----TLERKFPRLVRIALNPNGSVSNHWDSSTN-SWSIYFRRSLNDEE 180
           + +    W D+     TL+ ++P L R+ ++ N  +S+   SS   SW+  FRR+L+D E
Sbjct: 631 DGERIRFWEDLWWGDQTLKDQYPXLFRVVMDKNIPISSILGSSRPFSWNFNFRRNLSDSE 690

Query: 181 ILDFRTLLSQIS-PSQSASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLESFLYKRF-WK 240
           I D   L+  ++  + S S  D R WSL +SG F VKS    LS       F   +F WK
Sbjct: 691 IEDLERLMHSLNCMNLSTSVSDVRSWSLCSSGLFTVKSFFTALSQMLDSSPFFPTKFVWK 750

Query: 241 SNSPRRINISIWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
           S  P ++   IW++  + ++   +LQ +    A+SP +C LC
Sbjct: 751 SQVPFKVKAFIWLVAHKKVNTNDLLQLRRPHKAISPDICKLC 792

[Close]

BLAST of CSPI03G23140 vs. TrEMBL
Match: A5B0H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006235 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-33
Identity = 88/254 (34.65%), Postives = 132/254 (51.97%), Query Frame = 1


Query: 1    MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
            MP +  + +ER+ R F W G   GK +HLV+WD V +    GGL LG +  +N+ALL KW
Sbjct: 1390 MPATVAAKIERLQRDFLWSGVGEGKRDHLVRWDIVXRPKTIGGLGLGNISXRNLALLGKW 1449

Query: 61   GWRFSKEQNSLWCQVIISIHGSSTFNWH---SNEKETHPWMDI----ITLERKFPRLVRI 120
             WR+ +E ++LW Q I  +    +        N      W D+      L  ++PRL R+
Sbjct: 1450 LWRYPREGSALWHQAIAQVFQEFSLITRYVVGNGDRIRFWEDLWRGDQXLGTQYPRLFRV 1509

Query: 121  ALNPNGSVSN-HWDSSTNSWSIYFRRSLNDEEILDFRTLLSQISPSQ-SASFPDQRFWSL 180
             ++ N S+S+    S    W++ FRR+L+D EI D   L+  +     S S PD R W L
Sbjct: 1510 VVDKNISISSVLXPSRPFLWNLNFRRNLSDSEIEDLEGLMRSLDDLYLSPSVPDARLWPL 1569

Query: 181  ETSGSFLVKSLVKHLSTSS-PLESFLYKRFWKSNSPRRINISIWIMLFENLDCASVLQRK 240
             +SG F VKS    LS SS   ++F  K  W S  P ++   +W++  + ++   +LQ +
Sbjct: 1570 SSSGLFSVKSFFLALSQSSGSSQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNTNDMLQVR 1629

Query: 241  LSSHALSPYVCPLC 245
                ALSP +C LC
Sbjct: 1630 RPYKALSPDICILC 1643

[Close]

BLAST of CSPI03G23140 vs. TrEMBL
Match: A5BI72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32
Identity = 92/282 (32.62%), Postives = 136/282 (48.23%), Query Frame = 1


Query: 1   MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
           +P S  + +ER+ R F W G   GK +HLV WD V K    GGL  GK+  +N+ALL KW
Sbjct: 367 IPASVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKW 426

Query: 61  GWRFSKEQNSLWCQVIISIHGS--------STFNWH-----------------------S 120
            WR+ +E ++LW QVI+SI+GS        +   W                         
Sbjct: 427 LWRYPREGSALWHQVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVVG 486

Query: 121 NEKETHPWMDIITLER----KFPRLVRIALNPNGSVSNHWDSSTN-SWSIYFRRSLNDEE 180
           N      W D+   E+    ++PRL+R+  + N  +S+   S+   SW+  FRR+L+D E
Sbjct: 487 NGDRIRFWDDLWWGEQPLGVQYPRLLRVVTDKNAPISSILGSTRPFSWNFTFRRNLSDSE 546

Query: 181 ILDFRTLLSQISPSQ-SASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLESFLYKRF-WK 240
           I D   L+        S+S PD+R WSL  SG F VK     LS  S        +F W 
Sbjct: 547 IEDLEGLMQSFDRLHISSSVPDKRSWSLSPSGLFTVKXFFLALSQYSESPPIFPTKFVWN 606

Query: 241 SNSPRRINISIWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
           +  P ++   +W++  + ++   +LQ +    ALSP +C LC
Sbjct: 607 AQVPFKVKSFVWLVAHKKVNTNDLLQLRRPYKALSPDICKLC 648

[Close]

BLAST of CSPI03G23140 vs. NCBI nr
Match: gi|147798966|emb|CAN68165.1| (hypothetical protein VITISV_008538 [Vitis vinifera])

HSP 1 Score: 162.2 bits (409), Expect = 1.4e-36
Identity = 99/282 (35.11%), Postives = 145/282 (51.42%), Query Frame = 1


Query: 1    MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
            +P S    +ER+ R F W G   GK +HLV W+ V KS   GGL LG++  +N ALL KW
Sbjct: 925  IPASVAGRIERLQRDFLWSGVGEGKRDHLVSWBVVCKSKMKGGLGLGRISLRNSALLGKW 984

Query: 61   GWRFSKEQNSLWCQVIISIHGSSTFNWHSNE--KETH--PWMDIITLER----------- 120
             WR+ +E ++LW QVI+SI+GS +  W +N   + +H  PW  I  + +           
Sbjct: 985  LWRYPREGSALWHQVILSIYGSHSNGWDANTXVRWSHRCPWKAIAQVFQDFSKFTRFIVG 1044

Query: 121  --------------------KFPRLVRIALNPNGSVSNHWDSSTN-SWSIYFRRSLNDEE 180
                                +FPRL+R+ ++ N  +S+   S+   SW+  FRR+L+D E
Sbjct: 1045 DGDRIRFWEDLWWGDQSLGVRFPRLLRVVMDKNILISSILGSTRPFSWNFNFRRNLSDSE 1104

Query: 181  ILDFRTLLSQISPSQ-SASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLES-FLYKRFWK 240
            I    +L+  +     S S PD+R WSL +SG F VKS    LS  S L S F  K  W 
Sbjct: 1105 IEKVESLMQSLDHIHLSPSVPDKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWN 1164

Query: 241  SNSPRRINISIWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
            S  P +I   +W++  + ++   +LQ +    ALSP +C LC
Sbjct: 1165 SQVPFKIKFFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLC 1206

[Close]

BLAST of CSPI03G23140 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 162.2 bits (409), Expect = 1.4e-36
Identity = 97/283 (34.28%), Postives = 144/283 (50.88%), Query Frame = 1


Query: 1    MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
            MP   +  LE++M+ F W+G + GK N+LVKW+ VIKS ++GGL +G L+++N ALL+KW
Sbjct: 1813 MPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWEIVIKSKEEGGLGVGNLRNRNEALLAKW 1872

Query: 61   GWRFSKEQNSLWCQVIISIHGSSTFNWHS----NEKETHPWMDIIT-------------- 120
             WRF  E +SLW +VI S +G     W++          PW DI                
Sbjct: 1873 LWRFPXEPHSLWHKVIRSKYGLQDNGWNAFPPIRGSSRSPWKDISIGSQLFLHCCKFEVG 1932

Query: 121  -----------------LERKFPRLVRIALNPNGSVSNHWDSSTN--SWSIYFRRSLNDE 180
                             L+ +FPRL  ++   N ++S+  D STN  SW+  FRR+LN+ 
Sbjct: 1933 NGERVRFWEDGWLDGGXLKEQFPRLFLLSRKHNQNISSFVDLSTNSLSWNFDFRRNLNEA 1992

Query: 181  EILDFRTLLSQISPSQ-SASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLESFL-YKRFW 240
            EI +   LL ++   + S S  D R W +E SG F  KS    LS +  ++ F  + + W
Sbjct: 1993 EIEEAARLLQKVEEVRLSQSRXDNRRWKMEASGLFTCKSYCSFLSNNGMMQYFQPHSQIW 2052

Query: 241  KSNSPRRINISIWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
            KS  P ++ I +W+     L+    +QR+     LSP  C LC
Sbjct: 2053 KSKVPPKVKILVWLAAKGKLNTCDQIQRRSPFICLSPQWCSLC 2095

[Close]

BLAST of CSPI03G23140 vs. NCBI nr
Match: gi|147775063|emb|CAN77207.1| (hypothetical protein VITISV_014785 [Vitis vinifera])

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 97/272 (35.66%), Postives = 140/272 (51.47%), Query Frame = 1


Query: 1   MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
           +P S  +  ER+ R F W G   GK +HLV+W+AV K    GGL +GK+  +N ALL KW
Sbjct: 540 IPASVAAKRERLQRDFLWSGVGEGKRDHLVRWEAVCKPRIIGGLGIGKIPLRNRALLGKW 599

Query: 61  GWRFSKEQNSLWCQVIISIHGSSTFNWHSNE---------------------KETHPWMD 120
            WRF +E  SLW QVI+SI+G+ +  W +N                      +    W D
Sbjct: 600 LWRFPRESTSLWHQVILSIYGTHSNGWDANTIAIAQGFQDFSKYTRLIVGNGERIRFWED 659

Query: 121 II----TLERKFPRLVRIALNPNGSVSNHWDSSTN-SWSIYFRRSLNDEEILDFRTLLSQ 180
           +     TL+ ++PRL R+ ++ N  +S+   SS   SW+  FRR+L D EI D   L+  
Sbjct: 660 LWWGDQTLKDQYPRLFRVVMDKNIPISSILGSSRPFSWNFNFRRNLTDPEIEDLERLMHS 719

Query: 181 IS-PSQSASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLESFLYKRF-WKSNSPRRINIS 240
           +   + S S  D R WSL +SG F VKS    LS       F   +F WKS  P ++   
Sbjct: 720 LDCMNLSTSASDARSWSLCSSGLFTVKSFFTALSQMPDSSPFFPTKFVWKSQVPFKVKAF 779

Query: 241 IWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
           IW++  + ++   +LQ +    A+SP +C LC
Sbjct: 780 IWLVAHKKVNTNDLLQLRRPHKAISPDICKLC 811

[Close]

BLAST of CSPI03G23140 vs. NCBI nr
Match: gi|658018704|ref|XP_008344711.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 98/283 (34.63%), Postives = 144/283 (50.88%), Query Frame = 1


Query: 1   MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
           +P   +  LE++M+ F W+G + GK NHL+KWD VIK  ++GGL LG L+++N ALL+KW
Sbjct: 6   IPCGVIGRLEKLMKGFLWEGVEEGKKNHLLKWDIVIKGKEEGGLGLGNLRNRNEALLAKW 65

Query: 61  GWRFSKEQNSLWCQVIISIHGSSTFNWHS----NEKETHPWMDIIT-------------- 120
            WRF KE +SLW +VI S +G     W++          PW DI +              
Sbjct: 66  LWRFPKEPHSLWHKVIRSKYGLQNNGWNAFPPMRGSSRSPWKDISSGSQSFLHCCKFEVG 125

Query: 121 -----------------LERKFPRLVRIALNPNGSVSNHWDSSTN--SWSIYFRRSLNDE 180
                            L+ +FPRL  ++   N ++S+  D STN  SW+  FRR+LN+ 
Sbjct: 126 NRERVRFWEDGWLEGGPLKEQFPRLFLLSRMHNQNISSFVDLSTNSLSWNFDFRRNLNEX 185

Query: 181 EILDFRTLLSQISPSQ-SASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLESF-LYKRFW 240
           EI +   LL ++   + S S  D R W LE S  F  KS    LS +  ++ F  Y + W
Sbjct: 186 EIEEXARLLQKVEEVRLSQSRTDNRRWKLEASXLFTCKSYRSFLSNNGXMQYFPPYSQIW 245

Query: 241 KSNSPRRINISIWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
           KS  P  + I + ++    L+    +QR+     LSP+ C LC
Sbjct: 246 KSKVPPXVKILVXLVAKGKLNTCDQIQRRSHFICLSPHWCSLC 288

[Close]

BLAST of CSPI03G23140 vs. NCBI nr
Match: gi|147854320|emb|CAN83427.1| (hypothetical protein VITISV_009103 [Vitis vinifera])

HSP 1 Score: 154.8 bits (390), Expect = 2.2e-34
Identity = 97/282 (34.40%), Postives = 142/282 (50.35%), Query Frame = 1


Query: 1   MPESALSSLERIMRKFFWKGNKVGKLNHLVKWDAVIKSYKDGGLSLGKLKHKNMALLSKW 60
           +P S  + +ERI R F W G   GK +HLV+W+AV KS   GGL +GK+  +N ALL KW
Sbjct: 511 IPASVAAKIERIQRDFLWSGVGEGKRDHLVRWEAVCKSRVIGGLGIGKIPLRNRALLGKW 570

Query: 61  GWRFSKEQNSLWCQVIISIHGSST--------FNWH-----------------------S 120
            WRF +E  SLW QVI+SI+G+ +          W                         
Sbjct: 571 LWRFPRESTSLWHQVILSIYGTHSNGWDANTIVRWSHRCPWKAIAQGFQDFSKYTRFIVG 630

Query: 121 NEKETHPWMDII----TLERKFPRLVRIALNPNGSVSNHWDSSTN-SWSIYFRRSLNDEE 180
           + +    W D+     TL+ ++P L R+ ++ N  +S+   SS   SW+  FRR+L+D E
Sbjct: 631 DGERIRFWEDLWWGDQTLKDQYPXLFRVVMDKNIPISSILGSSRPFSWNFNFRRNLSDSE 690

Query: 181 ILDFRTLLSQIS-PSQSASFPDQRFWSLETSGSFLVKSLVKHLSTSSPLESFLYKRF-WK 240
           I D   L+  ++  + S S  D R WSL +SG F VKS    LS       F   +F WK
Sbjct: 691 IEDLERLMHSLNCMNLSTSVSDVRSWSLCSSGLFTVKSFFTALSQMLDSSPFFPTKFVWK 750

Query: 241 SNSPRRINISIWIMLFENLDCASVLQRKLSSHALSPYVCPLC 245
           S  P ++   IW++  + ++   +LQ +    A+SP +C LC
Sbjct: 751 SQVPFKVKAFIWLVAHKKVNTNDLLQLRRPHKAISPDICKLC 792

The following BLAST results are available for this feature:

BLAST of CSPI03G23140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNHX1_ARATH	1.2e-11	43.42	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P...	[more]

BLAST of CSPI03G23140 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BPI6_VITVI	9.5e-37	35.11	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1	[more]
A5BRJ2_VITVI	1.2e-36	35.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014785 PE=4 SV=1	[more]
A5BN97_VITVI	1.5e-34	34.40	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009103 PE=4 SV=1	[more]
A5B0H6_VITVI	8.3e-33	34.65	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006235 PE=4 SV=1	[more]
A5BI72_VITVI	1.4e-32	32.62	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000131 PE=4 SV=1	[more]

BLAST of CSPI03G23140 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G23140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147798966\|emb\|CAN68165.1\|	1.4e-36	35.11	hypothetical protein VITISV_008538 [Vitis vinifera]	[more]
gi\|657990185\|ref\|XP_008387315.1\|	1.4e-36	34.28	PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]	[more]
gi\|147775063\|emb\|CAN77207.1\|	1.8e-36	35.66	hypothetical protein VITISV_014785 [Vitis vinifera]	[more]
gi\|658018704\|ref\|XP_008344711.1\|	1.8e-36	34.63	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|147854320\|emb\|CAN83427.1\|	2.2e-34	34.40	hypothetical protein VITISV_009103 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G23140.1	CSPI03G23140.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G23140	Cucsa.267190	Cucumber (Gy14) v1	cgycpiB404

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G23140	Watermelon (97103) v1	cpiwmB247
CSPI03G23140	Cucurbita pepo (Zucchini)	cpecpiB549
CSPI03G23140	Cucurbita pepo (Zucchini)	cpecpiB779
CSPI03G23140	Bottle gourd (USVL1VR-Ls)	cpilsiB194
CSPI03G23140	Melon (DHL92) v3.6.1	cpimedB195
CSPI03G23140	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G23140	Silver-seed gourd	carcpiB0939
CSPI03G23140	Silver-seed gourd	carcpiB1053
CSPI03G23140	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G23140	Watermelon (97103) v2	cpiwmbB225
CSPI03G23140	Wax gourd	cpiwgoB351
CSPI03G23140	Cucurbita maxima (Rimu)	cmacpiB015
CSPI03G23140	Cucurbita maxima (Rimu)	cmacpiB460
CSPI03G23140	Cucurbita moschata (Rifu)	cmocpiB006
CSPI03G23140	Cucurbita moschata (Rifu)	cmocpiB448
CSPI03G23140	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G23140	Melon (DHL92) v3.5.1	cpimeB201
CSPI03G23140	Watermelon (Charleston Gray)	cpiwcgB242