CSPI03G23100 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G23100
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Photosynthetic NDH subcomplex L 3
Location	Chr3 : 19915059 .. 19916175 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAGAAGCTCTGCTTCTTTCTTTTGCTAATTTCCTCCATTTCTCATCTTACTCTTCCCATCAAATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAGACTTAAAATTACTGGGTTCCTCAAGAAACAAACAGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCTGCTAACGAGTATTGGCTCGACGGCCCTTTGCCTGTCCCTTCTGTTGACAACAGTAAGCTTTTTCATTGAACAAGTTTGAACTGTTTGTGTGTGTTTTTGTTTTCCTTATCTGGGTGTACCTCCAAATTGGAAAATTCGAATTGGTTTGGTTAGTTTGACGGCAAAGACTAGAATTTGCTATGAATTATTTGTTACAGACATTGTGAATGAGCAAACGGGGACGCGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGATTGAAAAAATATGCATTTGATCTTCTGGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCAGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCAAACAGATTATTCGACAATTTCGAAAAGGTAAAAAGCAGAGAATTTTTACAAGTTCCTTCAAATATATGCAAAATTTCAAGCTGAAGTAGCTCCTTTTGTGCTTTGCAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAAACAACACCCATACTTCAAGAAGTCATGGATAGAATGGCATAAATTGAACAAATTTATTGATTAGAAAGTTCGGAGGATCTGCTTGATTTTCCATAATTCTTCTGTGGTGCTTGTTCATAATTAGTTTCCATTTTTCCCATGTCTTTCAATGCGGCTTAAAGATGCAAAATCAAGACAAACAATGCAGTGAGTTTCACAAATTATAGTTCAACTATCTGG

mRNA sequence

ATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAGACTTAAAATTACTGGGTTCCTCAAGAAACAAACAGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCTGCTAACGAGTATTGGCTCGACGGCCCTTTGCCTGTCCCTTCTGTTGACAACAACATTGTGAATGAGCAAACGGGGACGCGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGATTGAAAAAATATGCATTTGATCTTCTGGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCAGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCAAACAGATTATTCGACAATTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAAACAACACCCATACTTCAAGAAGTCATGGATAGAATGGCATAA

Coding sequence (CDS)

ATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAGACTTAAAATTACTGGGTTCCTCAAGAAACAAACAGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCTGCTAACGAGTATTGGCTCGACGGCCCTTTGCCTGTCCCTTCTGTTGACAACAACATTGTGAATGAGCAAACGGGGACGCGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGATTGAAAAAATATGCATTTGATCTTCTGGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCAGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCAAACAGATTATTCGACAATTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAAACAACACCCATACTTCAAGAAGTCATGGATAGAATGGCATAA

Homology

[Close]

BLAST of CSPI03G23100 vs. Swiss-Prot
Match: PNSL3_ARATH (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 9.7e-67
Identity = 130/220 (59.09%), Postives = 164/220 (74.55%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSH--QISLTRRLALTSLVSV 60
           MA   +LN   + +P+LPKL    K  K +GF  ++T+       + +TRR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRK 120
            L    G  +  +A  N +W+DGPLP+P + NNIVNE+TGTR+F+K G+Y+A+IGTKGR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFD +ISAAA ++KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of CSPI03G23100 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 83.2 bits (204), Expect = 3.9e-15
Identity = 65/225 (28.89%), Postives = 109/225 (48.44%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFL----KKQTDVSSHQISLTRRLALTSLV 60
           MA +  L+G   A+       N   RL  +G +    + +  V + Q   T R ++  LV
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNASPEIASANEYWLD-GPLPVPS------VDNNIVNEQTGTRSFLKTGIYIANI 120
           +  L G +  +   A+   +  GP P PS       DN+  ++       LK   Y+  +
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNS--DQARDFALALKDRFYLQPL 120

Query: 121 GTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQP 180
                  R K+ A D++ +  LI +    YV+  LR K++++ YD + +IS+   DEK+ 
Sbjct: 121 PPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKS 180

Query: 181 LVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
           L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 LKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CSPI03G23100 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-12
Identity = 56/187 (29.95%), Postives = 91/187 (48.66%), Query Frame = 1


Query: 33  LKKQTDVSSHQISLTRRLALTSLVSVALFGNASPE--IASANEYWLDGPLPVPSVDNNIV 92
           ++ Q +VS  + S   R ++  LV+  L G +  +   A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 93  NEQTGTRSF---LKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLK 152
           +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 153 STFMYYDFDKVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPIL 212
           ++++ YD + VISA   +EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 213 QEVMDRM 215
             V+ ++
Sbjct: 227 NNVLAKL 229

[Close]

BLAST of CSPI03G23100 vs. Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-11
Identity = 53/173 (30.64%), Postives = 87/173 (50.29%), Query Frame = 1


Query: 47  TRRLALTSLVSVALFGNASPE--IASANEYWLDGPLPVPS--VDNNIVNEQTGTRSF-LK 106
           T R A+  LV+  + G A  +  +A A +    GP P PS  +   + ++Q       L+
Sbjct: 44  TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103

Query: 107 TGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISA 166
              Y+  +       R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++
Sbjct: 104 ERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINS 163

Query: 167 AADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
              DEK+ L DL  +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 164 KPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of CSPI03G23100 vs. Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-11
Identity = 53/173 (30.64%), Postives = 87/173 (50.29%), Query Frame = 1


Query: 47  TRRLALTSLVSVALFGNASPE--IASANEYWLDGPLPVPS--VDNNIVNEQTGTRSF-LK 106
           T R A+  LV+  + G A  +  +A A +    GP P PS  +   + ++Q       L+
Sbjct: 44  TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103

Query: 107 TGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISA 166
              Y+  +       R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++
Sbjct: 104 ERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINS 163

Query: 167 AADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
              DEK+ L DL  +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 164 KPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of CSPI03G23100 vs. TrEMBL
Match: A0A0A0L7N1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G414060 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 3.9e-115
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of CSPI03G23100 vs. TrEMBL
Match: W9QQM8_9ROSA (Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis GN=L484_021171 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.2e-69
Identity = 143/224 (63.84%), Postives = 166/224 (74.11%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPN---LPKLQNIHKRLKITGFLKKQTD---VSSHQISLTRRLALTS 60
           MARLANLNG    +     LP L+   KR  I GF  K+ D    S H +  TRR     
Sbjct: 1   MARLANLNGISETLAGALRLPSLRRTQKRANIVGFQGKKKDDHSQSEHNVQTTRRKLALG 60

Query: 61  LVSVALFGNAS---PEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGT 120
           L S+AL GN +     +A  N +W+DGPLPVP+VDNNI NE+TGTRSFLK GIY+A+IGT
Sbjct: 61  LASIALVGNTTCNGVSLAEDNGFWIDGPLPVPTVDNNIANEKTGTRSFLKKGIYMADIGT 120

Query: 121 KGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLV 180
           K RKYRL+K AFDLLA+ DLIGKDTLNYV+KYLRLKSTFMYYDFDKVI+AA  D+KQPL 
Sbjct: 121 KNRKYRLRKCAFDLLALEDLIGKDTLNYVQKYLRLKSTFMYYDFDKVITAATVDDKQPLT 180

Query: 181 DLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
            LANRLFD+FEKLE A KQ+NL ETE++Y+ T  ILQEVMDRMA
Sbjct: 181 HLANRLFDSFEKLEGATKQRNLPETETFYKDTKVILQEVMDRMA 224

[Close]

BLAST of CSPI03G23100 vs. TrEMBL
Match: A0A061FDQ5_THECC (PsbQ-like 1 OS=Theobroma cacao GN=TCM_031120 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.0e-67
Identity = 144/221 (65.16%), Postives = 166/221 (75.11%), Query Frame = 1


Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQT-DVSSHQISLTRRLALTSLV 60
           M  LANLNG      AIP LP +Q   K  KI GFL K T D+    + +TRR+AL SL 
Sbjct: 1   MVHLANLNGITETLPAIPKLPSIQRSRKTAKIIGFLGKNTEDLREQPLQMTRRMAL-SLA 60

Query: 61  SVALFGNASPEIASA--NEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGR 120
           S+AL G +S  I+ A  N YW+   LPVPSV+NNI NE+TGTRSF+K G+Y+AN+ TK R
Sbjct: 61  SIALVGTSSNSISLAEDNGYWITDLLPVPSVENNIANEKTGTRSFVKKGLYVANLNTKNR 120

Query: 121 KYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLA 180
            YRLKKYAFDLLAMADLIG  TL+YV+KYLRLKST MYYDFDK+ISAA  D+KQPL  LA
Sbjct: 121 MYRLKKYAFDLLAMADLIGPGTLSYVKKYLRLKSTVMYYDFDKIISAAPVDDKQPLTTLA 180

Query: 181 NRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           NRLFD+FEKLEDAAK +NL +TES YQ T  ILQEVMDRMA
Sbjct: 181 NRLFDSFEKLEDAAKTRNLPQTESCYQNTKVILQEVMDRMA 220

[Close]

BLAST of CSPI03G23100 vs. TrEMBL
Match: A0A068UC11_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021098001 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.6e-66
Identity = 142/221 (64.25%), Postives = 163/221 (73.76%), Query Frame = 1


Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTD-VSSHQISLTRRLALTSLV 60
           MAR  NL+G    FS IP L +++NI K+     FL K+TD +    +  TRRLAL  L 
Sbjct: 1   MARATNLSGIFEAFSIIPKLHEVENIRKKATDVNFLSKRTDELQEDTLQTTRRLAL-GLA 60

Query: 61  SVALFGN---ASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKG 120
           S+A+F     A   +A  N YWL GP+PVPS  N I NE TGTRSFLK GIYIANIGTKG
Sbjct: 61  SLAIFSTSRAAGISLAEDNGYWLTGPIPVPSAKNKITNEDTGTRSFLKRGIYIANIGTKG 120

Query: 121 RKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDL 180
           R +RLKKYAFDLLA+ DLIG DT NYV KYLRLKSTFMY+DFD+VI+AAAD EKQPL DL
Sbjct: 121 RMHRLKKYAFDLLALEDLIGPDTFNYVLKYLRLKSTFMYFDFDEVITAAADGEKQPLTDL 180

Query: 181 ANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
           ANRLFD+ EKLEDAAK +NL  T+S YQ TT ILQEVM+RM
Sbjct: 181 ANRLFDSVEKLEDAAKNQNLPRTQSLYQDTTVILQEVMNRM 220

[Close]

BLAST of CSPI03G23100 vs. TrEMBL
Match: V4TXQ4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009429mg PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.6e-66
Identity = 142/221 (64.25%), Postives = 160/221 (72.40%), Query Frame = 1


Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MA LANLNG      A+PNLPK Q   KR KI G L  + +    Q  +TRR++L  L S
Sbjct: 1   MAHLANLNGVSETLPAVPNLPKFQKFQKRAKIIGLLGHKAENFQDQAQITRRVSL-GLAS 60

Query: 61  VALFGNASPE---IASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGR 120
           +AL G+ S     +A  N  W+ GPLPVP V NNI +E+TGTRSFLK  IYIANIGTKGR
Sbjct: 61  LALIGSTSSNGASLAEDNGLWVTGPLPVPPVYNNIASEKTGTRSFLKKAIYIANIGTKGR 120

Query: 121 KYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLA 180
            +RLK+YAFDLLAMADLIG DTLNYVRKYLRLKSTFMYYDFD VISAAA  +KQPL DLA
Sbjct: 121 IHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPSDKQPLTDLA 180

Query: 181 NRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           NRLFD+FEKLE A   KN  +T+S Y  T  IL EVMDRMA
Sbjct: 181 NRLFDSFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 220

[Close]

BLAST of CSPI03G23100 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 254.6 bits (649), Expect = 5.5e-68
Identity = 130/220 (59.09%), Postives = 164/220 (74.55%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSH--QISLTRRLALTSLVSV 60
           MA   +LN   + +P+LPKL    K  K +GF  ++T+       + +TRR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRK 120
            L    G  +  +A  N +W+DGPLP+P + NNIVNE+TGTR+F+K G+Y+A+IGTKGR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFD +ISAAA ++KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of CSPI03G23100 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-16
Identity = 65/225 (28.89%), Postives = 109/225 (48.44%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFL----KKQTDVSSHQISLTRRLALTSLV 60
           MA +  L+G   A+       N   RL  +G +    + +  V + Q   T R ++  LV
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNASPEIASANEYWLD-GPLPVPS------VDNNIVNEQTGTRSFLKTGIYIANI 120
           +  L G +  +   A+   +  GP P PS       DN+  ++       LK   Y+  +
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNS--DQARDFALALKDRFYLQPL 120

Query: 121 GTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQP 180
                  R K+ A D++ +  LI +    YV+  LR K++++ YD + +IS+   DEK+ 
Sbjct: 121 PPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKS 180

Query: 181 LVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
           L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 LKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CSPI03G23100 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-13
Identity = 56/187 (29.95%), Postives = 91/187 (48.66%), Query Frame = 1


Query: 33  LKKQTDVSSHQISLTRRLALTSLVSVALFGNASPE--IASANEYWLDGPLPVPSVDNNIV 92
           ++ Q +VS  + S   R ++  LV+  L G +  +   A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 93  NEQTGTRSF---LKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLK 152
           +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 153 STFMYYDFDKVISAAADDEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPIL 212
           ++++ YD + VISA   +EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 213 QEVMDRM 215
             V+ ++
Sbjct: 227 NNVLAKL 229

[Close]

BLAST of CSPI03G23100 vs. NCBI nr
Match: gi|449468510|ref|XP_004151964.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 422.2 bits (1084), Expect = 5.6e-115
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of CSPI03G23100 vs. NCBI nr
Match: gi|659109145|ref|XP_008454569.1| (PREDICTED: psbQ-like protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 417.5 bits (1072), Expect = 1.4e-113
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHK+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNI NEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of CSPI03G23100 vs. NCBI nr
Match: gi|645278675|ref|XP_008244339.1| (PREDICTED: psbQ-like protein 2, chloroplastic [Prunus mume])

HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72
Identity = 149/221 (67.42%), Postives = 173/221 (78.28%), Query Frame = 1


Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFL-KKQTDVSSHQISLTRRLALTSLV 60
           MA LANLNG      AIP LP +Q   KR+ I GF+ KK+ D+    +  TRRLAL  L 
Sbjct: 1   MAHLANLNGVSETLPAIPRLPGIQWTQKRVSIVGFMGKKKDDLQEQPLHTTRRLAL-GLA 60

Query: 61  SVALFGNA--SPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGR 120
           S+AL GN+     +A  N +W+DGPLPVPS +N I NE+TGTRSFLK G+Y+ANIGTKGR
Sbjct: 61  SIALVGNSCNGVSLAEGNGFWIDGPLPVPSAENKIANEKTGTRSFLKKGLYMANIGTKGR 120

Query: 121 KYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLA 180
           K+RLKKYAFDLLAMADLI +DTLNYVR++LRLKSTFMY+DFD+VISAA  DEKQPL DLA
Sbjct: 121 KFRLKKYAFDLLAMADLIAQDTLNYVRRFLRLKSTFMYFDFDQVISAAPVDEKQPLTDLA 180

Query: 181 NRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           NRLFD  EKL+ A KQ+NLSETESYY+ TT ILQEVMDRMA
Sbjct: 181 NRLFDTVEKLDGAVKQRNLSETESYYKDTTVILQEVMDRMA 220

[Close]

BLAST of CSPI03G23100 vs. NCBI nr
Match: gi|1009110877|ref|XP_015898087.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 276.2 bits (705), Expect = 5.0e-71
Identity = 150/222 (67.57%), Postives = 174/222 (78.38%), Query Frame = 1


Query: 1   MARLANLNGKFSAIPNLPKLQNIH---KRLKITGFLKKQTDVSSHQISL--TRRLALTSL 60
           MARLAN N     +P + KL +I    KR+K  GFL K+TD  S Q SL  TRRLAL  L
Sbjct: 1   MARLANFNRVSETLPGIAKLPSIRRTQKRVKKIGFLCKKTDDDSQQHSLQTTRRLAL-GL 60

Query: 61  VSVALFGNA--SPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKG 120
            S+ L GN+     +A  N +WLDGPLPVPSV NNI NE+TGTRSFLK G+YIA+I TKG
Sbjct: 61  ASITLVGNSCNGVSLAEENRFWLDGPLPVPSVYNNIANEKTGTRSFLKKGVYIADIPTKG 120

Query: 121 RKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDL 180
           R YRL+KYAFDLLAM DLIG+DTLNYV+KYLRLKSTFMYYDFDKVISAA  D+KQPL +L
Sbjct: 121 RMYRLRKYAFDLLAMEDLIGQDTLNYVQKYLRLKSTFMYYDFDKVISAAPVDDKQPLTNL 180

Query: 181 ANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           ANRLFDN EKL+DAAKQ+NL++TE++Y+ T  ILQEVMDRMA
Sbjct: 181 ANRLFDNVEKLDDAAKQRNLTQTETFYKDTKVILQEVMDRMA 221

[Close]

BLAST of CSPI03G23100 vs. NCBI nr
Match: gi|470116327|ref|XP_004294334.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 276.2 bits (705), Expect = 5.0e-71
Identity = 150/223 (67.26%), Postives = 171/223 (76.68%), Query Frame = 1


Query: 1   MARLANLNGKFSAIP---NLPKLQNIHKRLKITGFL--KKQTDVSSHQISLTRRLALTSL 60
           MA+LANLNG    +P    LP +Q   KR+ I G L  KK  DV    +  TRRLAL  L
Sbjct: 1   MAQLANLNGISETLPVLHRLPSIQKTRKRVSIIGCLGKKKDHDVLEQPLQTTRRLAL-GL 60

Query: 61  VSVALFGNASPEIASA---NEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTK 120
            S+AL GN+S E A A   N +WLDGPLPVPS DN I NE+TGTRSFLK  +Y+A+IGTK
Sbjct: 61  ASIALVGNSSSEAALAEGNNGFWLDGPLPVPSADNKIANEETGTRSFLKNHLYMADIGTK 120

Query: 121 GRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVD 180
           GRKYRLKKYAFDLLAMADLI +DTLNYV+KYLRLKSTFMY+DFDKVI+AA   EKQPL D
Sbjct: 121 GRKYRLKKYAFDLLAMADLIAQDTLNYVQKYLRLKSTFMYFDFDKVITAAPVTEKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           LANRLF+  EKL+ A +Q+NLSETE+YYQ TT ILQEVMDRMA
Sbjct: 181 LANRLFNTVEKLDGAVRQRNLSETETYYQDTTVILQEVMDRMA 222

The following BLAST results are available for this feature:

BLAST of CSPI03G23100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL3_ARATH	9.7e-67	59.09	Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t...	[more]
PSBQ1_ARATH	3.9e-15	28.89	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ2_ARATH	6.8e-12	29.95	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ_ORYSI	2.0e-11	30.64	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]
PSBQ_ORYSJ	2.0e-11	30.64	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonic...	[more]

BLAST of CSPI03G23100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7N1_CUCSA	3.9e-115	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G414060 PE=4 SV=1	[more]
W9QQM8_9ROSA	4.2e-69	63.84	Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis GN=L484_021171 PE=4 SV=1	[more]
A0A061FDQ5_THECC	1.0e-67	65.16	PsbQ-like 1 OS=Theobroma cacao GN=TCM_031120 PE=4 SV=1	[more]
A0A068UC11_COFCA	2.6e-66	64.25	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021098001 PE=4 SV=1	[more]
V4TXQ4_9ROSI	2.6e-66	64.25	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009429mg PE=4 SV=1	[more]

BLAST of CSPI03G23100 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01440.1	5.5e-68	59.09	PsbQ-like 1	[more]
AT4G21280.2	2.2e-16	28.89	photosystem II subunit QA	[more]
AT4G05180.1	3.8e-13	29.95	photosystem II subunit Q-2	[more]

BLAST of CSPI03G23100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468510\|ref\|XP_004151964.1\|	5.6e-115	100.00	PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucu...	[more]
gi\|659109145\|ref\|XP_008454569.1\|	1.4e-113	98.60	PREDICTED: psbQ-like protein 2, chloroplastic [Cucumis melo]	[more]
gi\|645278675\|ref\|XP_008244339.1\|	1.5e-72	67.42	PREDICTED: psbQ-like protein 2, chloroplastic [Prunus mume]	[more]
gi\|1009110877\|ref\|XP_015898087.1\|	5.0e-71	67.57	PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic-like ...	[more]
gi\|470116327\|ref\|XP_004294334.1\|	5.0e-71	67.26	PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Frag...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G23100.1	CSPI03G23100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 29..215 score: 2.5
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 75..215 score: 9.9
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 105..215 score: 8.24
None	No IPR available	unknown	Coil	Coil	coord: 207..215 scor
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 1..215 score: 3.6E
None	No IPR available	PANTHER	PTHR33399:SF2	PSBQ-LIKE PROTEIN 2, CHLOROPLASTIC	coord: 1..215 score: 3.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G23100	Csa3G414060	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G23100	CsaV3_3G022840	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G23100	Cucsa.267240	Cucumber (Gy14) v1	cgycpiB404
CSPI03G23100	Cp4.1LG02g01180	Cucurbita pepo (Zucchini)	cpecpiB549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G23100	Melon (DHL92) v3.6.1	cpimedB195
CSPI03G23100	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G23100	Silver-seed gourd	carcpiB0939
CSPI03G23100	Silver-seed gourd	carcpiB1053
CSPI03G23100	Watermelon (97103) v2	cpiwmbB225
CSPI03G23100	Wax gourd	cpiwgoB351
CSPI03G23100	Cucurbita maxima (Rimu)	cmacpiB015
CSPI03G23100	Cucurbita maxima (Rimu)	cmacpiB460
CSPI03G23100	Cucurbita moschata (Rifu)	cmocpiB006
CSPI03G23100	Cucurbita moschata (Rifu)	cmocpiB448
CSPI03G23100	Melon (DHL92) v3.5.1	cpimeB201
CSPI03G23100	Watermelon (Charleston Gray)	cpiwcgB242
CSPI03G23100	Watermelon (97103) v1	cpiwmB247
CSPI03G23100	Cucurbita pepo (Zucchini)	cpecpiB779
CSPI03G23100	Bottle gourd (USVL1VR-Ls)	cpilsiB194