CSPI03G22960 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G22960
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr3 : 19722849 .. 19723941 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATACAAGGACTCTCACCTTCTTTCCTTCCTTGCCCATCAAGGCACTCTGATTCAACGCTCATGTCCCCACACCTCCCAACAAAATGGAAGAGCTGAACGCAAACATTGTTACATTCTAGACTCTGTTCGCGCTCAACTTTTGTTTGTTGCCTGTCTTGAAAAATTTTGGGGAGAGGTTGCCCCACCTCTGTTTATGTCATCAACTGTCTTCCTTCTCAAGTCATTCACAATGTTTCCCCATTTGAACGGCTATATGGTATTTTTTCCTCTTACTCTAGTCTCAAGGTTTTTGGTTGTGCATGTGTTGTGTTATTACATTCTCATGAACATACCAAACTTGAATCATGTGCTCGTCTATGTGGTTTCTTAGGTTATGGTACTAAACATAAAGGATTTCGTTGTTGGGATCCCATCTCTCAACGATTACGTAGATCTCGTCCTGTCACCTTTTGGGAACATCGTATGTTATCTAGTCTTTCTTTATTTCATGCATCTCTCTCTAGTCATCATCCATTCTTCACTGATCTGTGTCTTCTTCGTCGTGCTTTCTATGGTCTCAAATAGGCTCCTCGAGCTTGGTTTGCAACATTCAGTTCCACTATTACTCAACTTGGGTTCACCTCCAGCTCTCATGATTCGATCTTATTCACTCGTCAGACATCTCGTGGTATTGTGCTCCTTCTTTTATATGTTGATGGTATGATTATTACAGGTGATGATCCTCAAGTCATGTCTGATTTGCAATGTTACCTGAGTAAGCACTTTGAGATTAAGGATTTAGGAACCCTCAGTTATTTTCTTGGCCTTGAGATCTCATCCTCATATGATGGCTACTACATATCTCAAGGTAAATATGCATCTAACCTCCTCAGACGATCTGGTATTACCGACTCTACCACATCCTCAACGCCTTTAGATCCAAATGTGTGACTCACTCCTTTTGATGGTATTCCTCTTGACGATCCTACTTTGTATCGACAACTTGTTGGTAGCTTGATTTACTTAAATGTGACTCGTTCAGATATTGCATTTGCAGTTCACATTATTAGTTTATTCATGGCTGCTCCTCGTACTATTTACTTCACTGT

mRNA sequence

ATGGAATACAAGGACTCTCACCTTCTTTCCTTCCTTGCCCATCAAGGCACTCTGATTCAACGCTCATGTCCCCACACCTCCCAACAAAATGGAAGAGCTGAACGCAAACATTGTTACATTCTAGACTCTGTTCGCGCTCAACTTTTGTTTGTTGCCTGTCTTGAAAAATTTTGGGGAGAGGTTGCCCCACCTCTGTTTATGTCATCAACTGTCTTCCTTCTCAAGTCATTCACAATGTTTCCCCATTTGAACGGCTATATGGTTATGGTACTAAACATAAAGGATTTCGTTGTTGGGATCCCATCTCTCAACGATTACGTAGATCTCGTCCTGTCACCTTTTGGGAACATCGCTCCTCGAGCTTGGTTTGCAACATTCAGTTCCACTATTACTCAACTTGGGTTCACCTCCAGCTCTCATGATTCGATCTTATTCACTCGTCAGACATCTCGTGGTATTGTGCTCCTTCTTTTATATGTTGATGGTATGATTATTACAGGTGATGATCCTCAAGTCATGTCTGATTTGCAATGTTACCTGAGTAAGCACTTTGAGATTAAGGATTTAGGAACCCTCAGTTATTTTCTTGGCCTTGAGATCTCATCCTCATATGATGGCTACTACATATCTCAAGGTAAATATGCATCTAACCTCCTCAGACGATCTGGTATTACCGACTCTACCACATCCTCAACGCCTTTAGATCCAAATGTGTGA

Coding sequence (CDS)

ATGGAATACAAGGACTCTCACCTTCTTTCCTTCCTTGCCCATCAAGGCACTCTGATTCAACGCTCATGTCCCCACACCTCCCAACAAAATGGAAGAGCTGAACGCAAACATTGTTACATTCTAGACTCTGTTCGCGCTCAACTTTTGTTTGTTGCCTGTCTTGAAAAATTTTGGGGAGAGGTTGCCCCACCTCTGTTTATGTCATCAACTGTCTTCCTTCTCAAGTCATTCACAATGTTTCCCCATTTGAACGGCTATATGGTTATGGTACTAAACATAAAGGATTTCGTTGTTGGGATCCCATCTCTCAACGATTACGTAGATCTCGTCCTGTCACCTTTTGGGAACATCGCTCCTCGAGCTTGGTTTGCAACATTCAGTTCCACTATTACTCAACTTGGGTTCACCTCCAGCTCTCATGATTCGATCTTATTCACTCGTCAGACATCTCGTGGTATTGTGCTCCTTCTTTTATATGTTGATGGTATGATTATTACAGGTGATGATCCTCAAGTCATGTCTGATTTGCAATGTTACCTGAGTAAGCACTTTGAGATTAAGGATTTAGGAACCCTCAGTTATTTTCTTGGCCTTGAGATCTCATCCTCATATGATGGCTACTACATATCTCAAGGTAAATATGCATCTAACCTCCTCAGACGATCTGGTATTACCGACTCTACCACATCCTCAACGCCTTTAGATCCAAATGTGTGA
Homology
[Close]
BLAST of CSPI03G22960 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.3e-11
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1 

Query: 156 LLLYVDGMIITGDDPQVMSDLQCYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYA 215
           LLLYVD +++TG    +++ L   LS  F +KDLG + YFLG++I +   G ++SQ KYA
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 216 SNLLRRSGITDSTTSSTPL 235
             +L  +G+ D    STPL
Sbjct: 63  EQILNNAGMLDCKPMSTPL 81

[Close]
BLAST of CSPI03G22960 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.3e-11
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 1 

Query: 118  APRAWFATFSSTI-TQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDL 177
            APR W+  F S + +Q    + S   + F R +    ++LLLYVD M+I G D  +++ L
Sbjct: 966  APRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKL 1025

Query: 178  QCYLSKHFEIKDLGTLSYFLGLEI--SSSYDGYYISQGKYASNLLRRSGITDSTTSSTPL 235
            +  LSK F++KDLG     LG++I    +    ++SQ KY   +L R  + ++   STPL
Sbjct: 1026 KGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPL 1085

[Close]
BLAST of CSPI03G22960 vs. TrEMBL
Match: A5BYR2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014855 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.1e-33
Identity = 75/117 (64.10%), Postives = 94/117 (80.34%), Query Frame = 1 

Query: 118  APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDLQ 177
            APRAWFA FSSTI +LG+T+S +DS LF R+T +G +LLLLYVD MIITGDD   + +L+
Sbjct: 959  APRAWFAKFSSTIFRLGYTASPYDSALFLRRTDKGTILLLLYVDDMIITGDDLSGIQELK 1018

Query: 178  CYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSGITDSTTSSTPL 235
             +LS+ FE+KDLG LSYFLGLEI+ S DG YI+Q KYASNLL ++G+TDS T  TP+
Sbjct: 1019 DFLSQQFEMKDLGHLSYFLGLEITHSTDGLYITQAKYASNLLSQAGLTDSKTVDTPV 1075

[Close]
BLAST of CSPI03G22960 vs. TrEMBL
Match: A5B3N5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022133 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-32
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 1 

Query: 118  APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDLQ 177
            APRAWF  FSSTI +LG+T+S +DS LF R+T +G +LLLLYVD MIITGDD   + +L+
Sbjct: 2299 APRAWFXKFSSTIFRLGYTASPYDSALFLRRTDKGTILLLLYVDDMIITGDDLSGIQELK 2358

Query: 178  CYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSGITDSTTSSTPLDPN 237
             +LS+ FE+KDLG LSYFLGLEI+ S DG YI+Q KYAS+LL ++G+TDS T  TP++ N
Sbjct: 2359 DFLSQXFEMKDLGHLSYFLGLEITHSTDGLYITQAKYASDLLSQAGLTDSKTVDTPVELN 2418

[Close]
BLAST of CSPI03G22960 vs. TrEMBL
Match: A0A151UDQ7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047549 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-32
Identity = 71/118 (60.17%), Postives = 93/118 (78.81%), Query Frame = 1 

Query: 118 APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDLQ 177
           APR+WFA F  TI QLGFTSS++D+ LF R+   G V+LLLYVD MIITGDD   +S+L+
Sbjct: 135 APRSWFAKFHDTIAQLGFTSSTYDNALFIRRNDHGTVILLLYVDDMIITGDDSNGISELK 194

Query: 178 CYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSGITDSTTSSTPLD 236
            +L+ HFE+KDLG+LSYFLG++I S  DG ++SQ KYAS+L+ R+G+TD  T STPL+
Sbjct: 195 QFLNLHFEMKDLGSLSYFLGIQILSCDDGLFLSQAKYASDLISRAGLTDCKTESTPLE 252

[Close]
BLAST of CSPI03G22960 vs. TrEMBL
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002043 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-32
Identity = 71/118 (60.17%), Postives = 93/118 (78.81%), Query Frame = 1 

Query: 118 APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDLQ 177
           APR+WFA F  TI QLGFTSS++D+ LF R+   G V+LLLYVD MIITGDD   +S+L+
Sbjct: 816 APRSWFAKFHDTIAQLGFTSSTYDNALFIRRNDHGTVILLLYVDDMIITGDDSNGISELK 875

Query: 178 CYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSGITDSTTSSTPLD 236
            +L+ HFE+KDLG+LSYFLG++I S  DG ++SQ KYAS+L+ R+G+TD  T STPL+
Sbjct: 876 QFLNLHFEMKDLGSLSYFLGIQILSCDDGLFLSQAKYASDLISRAGLTDCKTESTPLE 933

[Close]
BLAST of CSPI03G22960 vs. TrEMBL
Match: A5BVC1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.5e-32
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 1 

Query: 118  APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDLQ 177
            APRAWFA FSSTI +LG+T+S +DS LF R+T +  +LLLLYVD MIITGDD   + +L+
Sbjct: 1025 APRAWFAKFSSTIFRLGYTASPYDSALFLRRTDKXTILLLLYVDDMIITGDDLSGIQELK 1084

Query: 178  CYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSGITDSTTSSTPLDPN 237
             +LS+ FE+KDLG LSYFLGLEI+ S DG YI+Q KYAS+LL ++G+TDS T  TP++ N
Sbjct: 1085 DFLSQQFEMKDLGHLSYFLGLEITHSTDGLYITQAKYASDLLSQAGLTDSKTVDTPVELN 1144

[Close]
BLAST of CSPI03G22960 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1 

Query: 118 APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDLQ 177
           A R WF  FS T+   GF  S  D   F + T+   + +L+YVD +II  ++   + +L+
Sbjct: 242 ASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELK 301

Query: 178 CYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSGITDSTTSSTPLDPN 237
             L   F+++DLG L YFLGLEI+ S  G  I Q KYA +LL  +G+     SS P+DP+
Sbjct: 302 SQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPS 361

Query: 238 V 239
           V
Sbjct: 362 V 362

[Close]
BLAST of CSPI03G22960 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-12
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1 

Query: 156 LLLYVDGMIITGDDPQVMSDLQCYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYA 215
           LLLYVD +++TG    +++ L   LS  F +KDLG + YFLG++I +   G ++SQ KYA
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 216 SNLLRRSGITDSTTSSTPL 235
             +L  +G+ D    STPL
Sbjct: 63  EQILNNAGMLDCKPMSTPL 81

[Close]
BLAST of CSPI03G22960 vs. NCBI nr
Match: gi|1012211090|ref|XP_015933157.1| (PREDICTED: uncharacterized protein LOC107459441 [Arachis duranensis])

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 119/255 (46.67%), Postives = 152/255 (59.61%), Query Frame = 1 

Query: 1   MEYKDSHLLSFLAHQGTLIQRSCPHTSQQNGRAERKHCYILDSVRAQLLFVACLEKFWGE 60
           MEY+DS LL+FLA QGTL + SCP  SQQNGRAERKH +ILDSV A L    CLE  WGE
Sbjct: 1   MEYRDSKLLTFLAKQGTLSEFSCPGMSQQNGRAERKHRHILDSVHAMLFSSLCLEHTWGE 60

Query: 61  V---APPLFMSSTVFLLKSFTMFPHL-----NGYMVMVLNIKDFVVGIPSLNDYVDLVLS 120
               A  +       +L + T F  L     +   + V     FV+  P  +  ++   S
Sbjct: 61  AILTAVHVINQLPSSILGNITPFERLYHTSPDYSSLRVFGCICFVLFQPHEHSKLEPQAS 120

Query: 121 PFGNIAPR--------AWFATFSSTITQLG-FTSSSHDSILFTRQTSRGIVLLLLYVDGM 180
            F + A          A   T S+ +  +  FT S H++ LF R++ R IVLLLLYVD M
Sbjct: 121 KFVSFARHFMVLSKLLANGLTSSAPLYAISVFTCSPHENALFIRKSERRIVLLLLYVDDM 180

Query: 181 IITGDDPQVMSDLQCYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSG 239
           IITGD    +SDL   L + FE+KDLG+LSYFLGL++ S  DG Y+S+ KYAS+LL R+G
Sbjct: 181 IITGDGIDSISDLNASLHRIFEMKDLGSLSYFLGLKVISIDDGIYLSEAKYASDLLARAG 240

[Close]
BLAST of CSPI03G22960 vs. NCBI nr
Match: gi|1021487608|ref|XP_016186754.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like, partial [Arachis ipaensis])

HSP 1 Score: 159.1 bits (401), Expect = 9.8e-36
Identity = 84/142 (59.15%), Postives = 105/142 (73.94%), Query Frame = 1 

Query: 99  GIPSLNDYVDLVLSPFGNI--APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLL 158
           G P  +D V L+      +  APR WF  FS+TI  LGFTSS H+++LF R++ RG+VLL
Sbjct: 16  GYPCPSDKVCLLRKALYGLKQAPREWFDKFSTTICSLGFTSSPHENVLFIRKSERGVVLL 75

Query: 159 LLYVDGMIITGDDPQVMSDLQCYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYAS 218
           LLYVD MIITGDD   +S L+  L + FE+KDLG+LSYFLGLE+ S+ DG Y+SQ KYAS
Sbjct: 76  LLYVDDMIITGDDVDGISALKASLHRTFEMKDLGSLSYFLGLEVISTDDGIYLSQAKYAS 135

Query: 219 NLLRRSGITDSTTSSTPLDPNV 239
           +LL R+GITDS T STPL+PNV
Sbjct: 136 DLLARAGITDSRTESTPLEPNV 157

[Close]
BLAST of CSPI03G22960 vs. NCBI nr
Match: gi|1021513193|ref|XP_016200032.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like, partial [Arachis ipaensis])

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-35
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 1 

Query: 118 APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDLQ 177
           APR WF  FS+TI  LGFTSS H++ LF R++ RG+VLLLLYVD MIITGDD   +SDL+
Sbjct: 44  APREWFDKFSTTICSLGFTSSPHENALFIRKSERGVVLLLLYVDDMIITGDDVDGISDLK 103

Query: 178 CYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSGITDSTTSSTPLDPN 237
             L + FE+KDLG+LSYFLGLE+ S+ DG Y+SQ KYAS+LL R+GITDS T  TPL+PN
Sbjct: 104 ASLHRTFEMKDLGSLSYFLGLEVISTDDGIYLSQAKYASDLLARAGITDSRTEFTPLEPN 163

Query: 238 V 239
           V
Sbjct: 164 V 164

[Close]
BLAST of CSPI03G22960 vs. NCBI nr
Match: gi|1012216606|ref|XP_015934612.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Arachis duranensis])

HSP 1 Score: 157.1 bits (396), Expect = 3.7e-35
Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 1 

Query: 99  GIPSLNDYVDLVLSPFGNI--APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLL 158
           G P  +D V L+      +   PR WF  FS+TI  LGFTSS H++ LF R++ RG+VLL
Sbjct: 23  GYPCPSDKVCLLRKALYGLKQVPREWFDKFSTTICNLGFTSSPHENALFIRKSERGVVLL 82

Query: 159 LLYVDGMIITGDDPQVMSDLQCYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYAS 218
           LLYVD MIITGDD   +SDL+  L + FE+KDLG+LSYFLGLE+ S+ DG Y+SQ +YAS
Sbjct: 83  LLYVDDMIITGDDIDGISDLKASLHRTFEMKDLGSLSYFLGLEVISTDDGIYLSQAEYAS 142

Query: 219 NLLRRSGITDSTTSSTPLDPNV 239
           +LL R+GITDS T STPL+PNV
Sbjct: 143 DLLARAGITDSRTESTPLEPNV 164

[Close]
BLAST of CSPI03G22960 vs. NCBI nr
Match: gi|1021477881|ref|XP_016178294.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like, partial [Arachis ipaensis])

HSP 1 Score: 156.4 bits (394), Expect = 6.3e-35
Identity = 78/121 (64.46%), Postives = 96/121 (79.34%), Query Frame = 1 

Query: 118 APRAWFATFSSTITQLGFTSSSHDSILFTRQTSRGIVLLLLYVDGMIITGDDPQVMSDLQ 177
           APR WF  FS+TI  LGFTSS H++ LF R+++RG+VLLLLYVD MIITGDD   +SDL+
Sbjct: 12  APREWFDKFSTTICSLGFTSSPHENALFIRKSNRGVVLLLLYVDDMIITGDDVDGISDLK 71

Query: 178 CYLSKHFEIKDLGTLSYFLGLEISSSYDGYYISQGKYASNLLRRSGITDSTTSSTPLDPN 237
             L + FE+KDLG+LSYFLGLE+ S+ DG Y+SQ KY  +LL R+GITDS T STPL+PN
Sbjct: 72  ASLHRTFEMKDLGSLSYFLGLEVISTDDGIYLSQAKYVLDLLARAGITDSRTESTPLEPN 131

Query: 238 V 239
           V
Sbjct: 132 V 132

The following BLAST results are available for this feature:
BLAST of CSPI03G22960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
M810_ARATH8.3e-1143.04Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
POLX_TOBAC8.3e-1135.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CSPI03G22960 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BYR2_VITVI4.1e-3364.10Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014855 PE=4 SV=1[more]
A5B3N5_VITVI2.7e-3261.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022133 PE=3 SV=1[more]
A0A151UDQ7_CAJCA2.7e-3260.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151SM08_CAJCA2.7e-3260.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5BVC1_VITVI3.5e-3261.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1[more]
BLAST of CSPI03G22960 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.11.5e-1840.50 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.14.7e-1243.04ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CSPI03G22960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012211090|ref|XP_015933157.1|2.4e-4246.67PREDICTED: uncharacterized protein LOC107459441 [Arachis duranensis][more]
gi|1021487608|ref|XP_016186754.1|9.8e-3659.15PREDICTED: uncharacterized mitochondrial protein AtMg00810-like, partial [Arachi... [more]
gi|1021513193|ref|XP_016200032.1|2.8e-3565.29PREDICTED: uncharacterized mitochondrial protein AtMg00810-like, partial [Arachi... [more]
gi|1012216606|ref|XP_015934612.1|3.7e-3558.45PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Arachis duranen... [more]
gi|1021477881|ref|XP_016178294.1|6.3e-3564.46PREDICTED: uncharacterized mitochondrial protein AtMg00810-like, partial [Arachi... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR013103RVT_2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0032559 adenyl ribonucleotide binding
molecular_function GO:0043168 anion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0032550 purine ribonucleoside binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G22960.1CSPI03G22960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 2..59
score: 8.7
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 118..235
score: 1.2
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 93..237
score: 5.9E-42coord: 2..69
score: 5.9
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 2..69
score: 5.9E-42coord: 93..237
score: 5.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G22960Cucumber (Chinese Long) v3cpicucB144
CSPI03G22960Watermelon (97103) v2cpiwmbB225
CSPI03G22960Wax gourdcpiwgoB351
CSPI03G22960Cucumber (Gy14) v1cgycpiB038
CSPI03G22960Cucurbita maxima (Rimu)cmacpiB015
CSPI03G22960Cucurbita maxima (Rimu)cmacpiB460
CSPI03G22960Cucurbita moschata (Rifu)cmocpiB006
CSPI03G22960Cucurbita moschata (Rifu)cmocpiB448
CSPI03G22960Cucumber (Chinese Long) v2cpicuB120
CSPI03G22960Melon (DHL92) v3.5.1cpimeB201
CSPI03G22960Watermelon (Charleston Gray)cpiwcgB242
CSPI03G22960Watermelon (97103) v1cpiwmB247
CSPI03G22960Cucurbita pepo (Zucchini)cpecpiB549
CSPI03G22960Cucurbita pepo (Zucchini)cpecpiB779
CSPI03G22960Bottle gourd (USVL1VR-Ls)cpilsiB194
CSPI03G22960Melon (DHL92) v3.6.1cpimedB195
CSPI03G22960Cucumber (Gy14) v2cgybcpiB110
CSPI03G22960Silver-seed gourdcarcpiB0939
CSPI03G22960Silver-seed gourdcarcpiB1053