CSPI03G22380 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G22380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 18839903 .. 18840304 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGAGGTTGGAGAAGAATGAGGACATTAGGGAACTTAAAGATGTAACTTTGGAGTTGTCCAAAAGCATTGAAAGGCTGGCAGAGGAATTACGAGAAAACAATGTTAGTTGCCGATGGAAAGAATCTGCTACGTCGGAGGGATCGATGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGATAGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTAATTGCAAACTTGAGGTGGATGAGAGGGGTTTCCATGGACATGGGAGCATATGCAGAAATGGATTGTGGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACACCAAAAGCTTTCTGAAGGGCTGCAAAGAGTTAAAGAAAGAGCGGAGAAGAAACTAG

mRNA sequence

ATGGAGGAGAGGTTGGAGAAGAATGAGGACATTAGGGAACTTAAAGATGTAACTTTGGAGTTGTCCAAAAGCATTGAAAGGCTGGCAGAGGAATTACGAGAAAACAATGTTAGTTGCCGATGGAAAGAATCTGCTACGTCGGAGGGATCGATGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGATAGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTAATTGCAAACTTGAGGTGGATGAGAGGGGTTTCCATGGACATGGGAGCATATGCAGAAATGGATTGTGGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACACCAAAAGCTTTCTGAAGGGCTGCAAAGAGTTAAAGAAAGAGCGGAGAAGAAACTAG

Coding sequence (CDS)

ATGGAGGAGAGGTTGGAGAAGAATGAGGACATTAGGGAACTTAAAGATGTAACTTTGGAGTTGTCCAAAAGCATTGAAAGGCTGGCAGAGGAATTACGAGAAAACAATGTTAGTTGCCGATGGAAAGAATCTGCTACGTCGGAGGGATCGATGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGATAGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTAATTGCAAACTTGAGGTGGATGAGAGGGGTTTCCATGGACATGGGAGCATATGCAGAAATGGATTGTGGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACACCAAAAGCTTTCTGAAGGGCTGCAAAGAGTTAAAGAAAGAGCGGAGAAGAAACTAG
Homology
[Close]
BLAST of CSPI03G22380 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 1  MEERLE-KNEDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKME 60
          MEERLE   +++  LK + LE+ K+++RLA+ELREN    + +ES TS+GS++KMKGKME
Sbjct: 6  MEERLEGMKKEVLSLKKMMLEMKKNMDRLADELRENQSYKKKEESDTSDGSIMKMKGKME 65

Query: 61 EDSIAVERGT 70
          E  I  E  T
Sbjct: 66 ETDITTEVNT 75

The following BLAST results are available for this feature:
BLAST of CSPI03G22380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G22380 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI03G22380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G22380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093726|ref|XP_008447685.1|2.7e-0651.43PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G22380.1CSPI03G22380.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 11..31
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G22380Silver-seed gourdcarcpiB0786
CSPI03G22380Silver-seed gourdcarcpiB0813
CSPI03G22380Cucumber (Chinese Long) v3cpicucB138
CSPI03G22380Cucumber (Chinese Long) v3cpicucB144
CSPI03G22380Cucumber (Chinese Long) v3cpicucB149
CSPI03G22380Watermelon (97103) v2cpiwmbB218
CSPI03G22380Watermelon (97103) v2cpiwmbB242
CSPI03G22380Watermelon (97103) v2cpiwmbB252
CSPI03G22380Wax gourdcpiwgoB282
CSPI03G22380Wax gourdcpiwgoB307
CSPI03G22380Wild cucumber (PI 183967)cpicpiB064
CSPI03G22380Wild cucumber (PI 183967)cpicpiB102
CSPI03G22380Cucurbita maxima (Rimu)cmacpiB522
CSPI03G22380Cucurbita maxima (Rimu)cmacpiB599
CSPI03G22380Cucurbita maxima (Rimu)cmacpiB908
CSPI03G22380Cucurbita moschata (Rifu)cmocpiB512
CSPI03G22380Cucurbita moschata (Rifu)cmocpiB587
CSPI03G22380Cucumber (Chinese Long) v2cpicuB120
CSPI03G22380Cucumber (Chinese Long) v2cpicuB127
CSPI03G22380Melon (DHL92) v3.5.1cpimeB203
CSPI03G22380Melon (DHL92) v3.5.1cpimeB239
CSPI03G22380Watermelon (Charleston Gray)cpiwcgB266
CSPI03G22380Watermelon (97103) v1cpiwmB218
CSPI03G22380Watermelon (97103) v1cpiwmB241
CSPI03G22380Cucurbita pepo (Zucchini)cpecpiB247
CSPI03G22380Cucurbita pepo (Zucchini)cpecpiB724
CSPI03G22380Bottle gourd (USVL1VR-Ls)cpilsiB214
CSPI03G22380Bottle gourd (USVL1VR-Ls)cpilsiB220
CSPI03G22380Melon (DHL92) v3.6.1cpimedB199
CSPI03G22380Melon (DHL92) v3.6.1cpimedB238
CSPI03G22380Cucumber (Gy14) v2cgybcpiB110
CSPI03G22380Cucumber (Gy14) v2cgybcpiB118