CSPI03G21870 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21870
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Cold-regulated protein, putative
Location	Chr3 : 18325730 .. 18326435 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCCTTAACTTTAATCTATCATACGTTTCCTCTCACAATCCCTGAATTCCTTCTCTCCCTATTTTCCCTCAATACTCCGCTGTGCTCCGGAGAAATGGGTGTGAGACTCGGCGTTCCGATCTGCATCGAGTGTGGAACCCATAGGAACCCGTGCAGGTGCAGGTTGGTTGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCCGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGTCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGAGAAACTTTTTGTTATTTTCTTTTCTTTTAGTATAAATGGGACAAGCTCAAGAAGCTTTGTGATCATAAATTCTGGTCCTGTCTTTTTTCTTACATAAATAAATAAAGTTAAATTCAGTTAATTTTAGATAAAGTAAAAACGTTGGGAATTATACAATTAATTGTTGTTAGGATATGATGTTAAAATGGTACTTTCAAATGGAATCATAATGTTTAATGTTGGGGATTGATTCTTGTTCATATGTATAATAAATGTTATGTAAAAGAAATGATCAACACAAATTATTTAAGCAAAGAAAGCACGCCCCCAACAAAACATAGCAACATTATTGAGAAGATAACATCTTGATATTAAGTCTGCAGTTTCGATTACGGGA

mRNA sequence

ATGGGTGTGAGACTCGGCGTTCCGATCTGCATCGAGTGTGGAACCCATAGGAACCCGTGCAGGTGCAGGTTGGTTGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCCGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGTCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Coding sequence (CDS)

ATGGGTGTGAGACTCGGCGTTCCGATCTGCATCGAGTGTGGAACCCATAGGAACCCGTGCAGGTGCAGGTTGGTTGGGCCGAGCCTGGGGTTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCCGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGTCATCCGGTCACCGTTGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Homology

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BLAST of CSPI03G21870 vs. TrEMBL
Match: A0A0A0L786_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346920 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of CSPI03G21870 vs. TrEMBL
Match: A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-32
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV +GVPICIECGTH NPCRC++VGP+LGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CSPI03G21870 vs. TrEMBL
Match: A0A072UXZ4_MEDTR (Cold-regulated protein, putative OS=Medicago truncatula GN=MTR_3g067720 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-27
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1


Query: 3  VRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGH 62
          VR GVP+C++CGT  NPCRC++VGP++GF+A VV  VVEWPVGALVY+F+H KGRRIMGH
Sbjct: 2  VRRGVPLCVQCGTRSNPCRCKVVGPTIGFVAFVVAGVVEWPVGALVYIFKHRKGRRIMGH 61

Query: 63 PVTVVYPSVSNAIPI 78
          P TVVYP V+ AIPI
Sbjct: 62 PATVVYPKVTRAIPI 76

[Close]

BLAST of CSPI03G21870 vs. TrEMBL
Match: A0A072UZW1_MEDTR (Cold-regulated protein, putative OS=Medicago truncatula GN=MTR_3g067715 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-27
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 1


Query: 3  VRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGH 62
          V +GVPIC++CGT  NPCRC++VGP+LGF+A V  AVVEWPVGALVY+F+H KGRRIMGH
Sbjct: 2  VGVGVPICVQCGTRSNPCRCKVVGPTLGFVAFVAAAVVEWPVGALVYIFKHKKGRRIMGH 61

Query: 63 PVTVVYPSVSNAIPI 78
          P TVVYP V+ AIPI
Sbjct: 62 PATVVYPKVNRAIPI 76

[Close]

BLAST of CSPI03G21870 vs. TrEMBL
Match: A0A0K9S2Z0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005220 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-27
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 5  LGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPV 64
          +GVPIC+ECGT  NPCRC++VGP++GFLA VV AVVEWPVG LVY F+H KGR+IMGHPV
Sbjct: 4  VGVPICVECGTRSNPCRCKIVGPTVGFLAFVVAAVVEWPVGMLVYPFKHRKGRKIMGHPV 63

Query: 65 TVVYPSVSNAIPI 78
          +VVYP V+NAIPI
Sbjct: 64 SVVYPKVNNAIPI 76

[Close]

BLAST of CSPI03G21870 vs. TAIR10
Match: AT3G03341.1 (AT3G03341.1 unknown protein)

HSP 1 Score: 117.5 bits (293), Expect = 3.8e-27
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 7  VPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTV 66
          +PIC++CGT  NPCRC++VGP+LG +A V   +VEWPVGALVY+F+H KGRRIMGHP T 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAIPI 78
          VYP VS +IPI
Sbjct: 62 VYPKVSRSIPI 72

[Close]

BLAST of CSPI03G21870 vs. NCBI nr
Match: gi|449466444|ref|XP_004150936.1| (PREDICTED: uncharacterized protein LOC101215155 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of CSPI03G21870 vs. NCBI nr
Match: gi|449466446|ref|XP_004150937.1| (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 6.2e-32
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV +GVPICIECGTH NPCRC++VGP+LGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CSPI03G21870 vs. NCBI nr
Match: gi|659114483|ref|XP_008457074.1| (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 3.1e-31
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M V +GVPICIECGTH NPCRC++VGP+LGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HP TVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of CSPI03G21870 vs. NCBI nr
Match: gi|659114485|ref|XP_008457075.1| (PREDICTED: uncharacterized protein LOC103496843 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-30
Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 1


Query: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MGV LGVP CI CGT RNPCRCR+VGPSLGFLALVVTAVVEWPVGALVYLFRH    RIM
Sbjct: 1  MGVGLGVPFCIGCGTLRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRH----RIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 73

[Close]

BLAST of CSPI03G21870 vs. NCBI nr
Match: gi|769814026|ref|XP_011622765.1| (PREDICTED: uncharacterized protein LOC105420519 [Amborella trichopoda])

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-29
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 1   MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
           + V +GVPIC++CGTH NPCRC++VGP+LGFLA    AVVEWPVGA+VYLFRH  GRRIM
Sbjct: 37  IAVGVGVPICVQCGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGAVVYLFRHMTGRRIM 96

Query: 61  GHPVTVVYPSVSNAIPI 78
            HPVTVVYPSVSNAIPI
Sbjct: 97  AHPVTVVYPSVSNAIPI 113

The following BLAST results are available for this feature:

BLAST of CSPI03G21870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G21870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L786_CUCSA	1.1e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346920 PE=4 SV=1	[more]
A0A0A0LA45_CUCSA	4.3e-32	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1	[more]
A0A072UXZ4_MEDTR	1.1e-27	72.00	Cold-regulated protein, putative OS=Medicago truncatula GN=MTR_3g067720 PE=4 SV=...	[more]
A0A072UZW1_MEDTR	1.4e-27	73.33	Cold-regulated protein, putative OS=Medicago truncatula GN=MTR_3g067715 PE=4 SV=...	[more]
A0A0K9S2Z0_SPIOL	1.4e-27	75.34	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005220 PE=4 SV=1	[more]

BLAST of CSPI03G21870 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	3.8e-27	67.61	unknown protein	[more]

BLAST of CSPI03G21870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466444\|ref\|XP_004150936.1\|	1.5e-38	100.00	PREDICTED: uncharacterized protein LOC101215155 [Cucumis sativus]	[more]
gi\|449466446\|ref\|XP_004150937.1\|	6.2e-32	81.82	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus]	[more]
gi\|659114483\|ref\|XP_008457074.1\|	3.1e-31	81.82	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
gi\|659114485\|ref\|XP_008457075.1\|	3.4e-30	88.31	PREDICTED: uncharacterized protein LOC103496843 [Cucumis melo]	[more]
gi\|769814026\|ref\|XP_011622765.1\|	3.8e-29	76.62	PREDICTED: uncharacterized protein LOC105420519 [Amborella trichopoda]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21870.1	CSPI03G21870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21870	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21870	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21870	Silver-seed gourd	carcpiB0798
CSPI03G21870	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21870	Watermelon (97103) v2	cpiwmbB224
CSPI03G21870	Wax gourd	cpiwgoB299
CSPI03G21870	Cucumber (Gy14) v1	cgycpiB299
CSPI03G21870	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21870	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21870	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21870	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21870	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21870	Watermelon (97103) v1	cpiwmB245
CSPI03G21870	Cucurbita pepo (Zucchini)	cpecpiB552