CSPI03G21640 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G21640
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 17934622 .. 17935812 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATTTAACTAACAAAGAACTTGGTGTTGATGAGTTGAATGCAATATTTGGAATTGAGGATGATGAACATCTTGGTACTGAAAATGAAACCTCAAAGCAAATATGTAGACCACGAGGACCAACTATTATGTTCGATGTAACTCACATTAGAAGTTTGGGAGAGAAGAAGGTGGTTGTGTGAAACTTTACATTGGCGGCCTATATAACGTAAGTCAATTTCATTTGTTTAGATCTAAATATATGCATCTCGTTTACGAGTTTATAATATTTTTGTAGGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAAATGTATTGTATGTCTTTGTAGATTCGTCCCTCACCTCTGTCGAACACACACAAGAATCTCGAGTTCGAAACTTATGTAGTAGATTGATGCTCTCAAAAAGTAACGAAATAGTTTTTGCTCCTTTTAATCCTGGGTAAGTCAAGTTATTTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGGGGTCATTGGGCACTGCTGGCCATATGCGTATGATGGTACAATATTCTACCTTGACTCACTAAGGACAACATCGAAGTCAACTACAAGATATATAACCAACACATAAGTTAATCTTCTATATCATTTAGTGAAGACTCTTATATGCATGTACAATATTTAAAAATTTGTTCAGTCTTATATCTTGTCAAAACAGAGCAATAGCGATGTTTCAGTCACAAAAGGACATTAAGAAAAGTAGAAAACAAACTTTATGGCGAATAGTAAAGGCAAGTACAAACATTTAAAGTCATTATATTTTGTAGACTACTAGCAATTAGGATTACTTCGTTATTCAAATTTGTTGATTTTATATAGTGTCCTCTACAAGTCGAGAGTACTGAGTGTGGATACTACGTCATGAGGTATAGGAGAGAAATTGTGACTAGGGGAAGCATTGTCATATCTGATGCGGTATATATCAAACAATTTCTTTTATGAGTCAATTGGTTTATTTGTATAGTGACTCAATTCATTTAATTTATTTTGCATGTTTATAGATTGATACACGAAGATCACACTCACAGGCAGAACTAGATGAGGTATGAGTTGAGTTAGCTGACTTTCTGGGTTCGTACATATGATTGTGACCAATAATTTGTGATTCTGAAGTAGGAATTTTTTGTTGTGGCGCTGCTTATGATCTGA

mRNA sequence

ATGGACAATTTAACTAACAAAGAACTTGGTGTTGATGAGTTGAATGCAATATTTGGAATTGAGGATGATGAACATCTTGGTACTGAAAATGAAACCTCAAAGCAAATATGTAGACCACGAGGACCAACTATTATGTTCGATGTAACTCACATTAGAAGTTTGGGAGAGAAGAAGGTGGTTGTGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAAATGTATTGTATGTCTTTGTAGATTCGTCCCTCACCTCTGTCGAACACACACAAGAATCTCGAGTTCGAAACTTATGTAGTAGATTGATGCTCTCAAAAAGTAACGAAATAGTTTTTGCTCCTTTTAATCCTGGAGCAATAGCGATGTTTCAGTCACAAAAGGACATTAAGAAAAGTAGAAAACAAACTTTATGGCGAATATGTCCTCTACAAGTCGAGAGTACTGAGTGTGGATACTACGTCATGAGGTATAGGAGAGAAATTGTGACTAGGGGAAGCATTGTCATATCTGATGCGATTGATACACGAAGATCACACTCACAGGCAGAACTAGATGAGGAATTTTTTGTTGTGGCGCTGCTTATGATCTGA

Coding sequence (CDS)

ATGGACAATTTAACTAACAAAGAACTTGGTGTTGATGAGTTGAATGCAATATTTGGAATTGAGGATGATGAACATCTTGGTACTGAAAATGAAACCTCAAAGCAAATATGTAGACCACGAGGACCAACTATTATGTTCGATGTAACTCACATTAGAAGTTTGGGAGAGAAGAAGGTGGTTGTGTACTTGTATTCATCTGTTCTTGGTTCGAAGGAAAATGTATTGTATGTCTTTGTAGATTCGTCCCTCACCTCTGTCGAACACACACAAGAATCTCGAGTTCGAAACTTATGTAGTAGATTGATGCTCTCAAAAAGTAACGAAATAGTTTTTGCTCCTTTTAATCCTGGAGCAATAGCGATGTTTCAGTCACAAAAGGACATTAAGAAAAGTAGAAAACAAACTTTATGGCGAATATGTCCTCTACAAGTCGAGAGTACTGAGTGTGGATACTACGTCATGAGGTATAGGAGAGAAATTGTGACTAGGGGAAGCATTGTCATATCTGATGCGATTGATACACGAAGATCACACTCACAGGCAGAACTAGATGAGGAATTTTTTGTTGTGGCGCTGCTTATGATCTGA
Homology
[Close]
BLAST of CSPI03G21640 vs. TrEMBL
Match: E5GBQ2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-08
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 140 CPLQVESTECGYYVMRYRREIVTRGSIVISDAIDTRRSHSQAELDE 186
           C LQV   ECGYYVMRY R+I+T GSIV++  IDTR S+SQ ELDE
Sbjct: 29  CHLQVGVVECGYYVMRYMRDIITNGSIVVTYLIDTRTSYSQLELDE 74

[Close]
BLAST of CSPI03G21640 vs. NCBI nr
Match: gi|778714234|ref|XP_011657210.1| (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 4.9e-17
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 1 

Query: 60  VVYLYSSVLGSKENVLYVFVDSSLTSVEHTQESRVRNLCSRLMLSKSNEIVFAPFNPGAI 119
           + YLYS++LGSKENV Y+F+D SLTS  H+QESRVRNLCSRLM+SKSNEIV APFNPG I
Sbjct: 76  MTYLYSAILGSKENVQYIFIDPSLTSTGHSQESRVRNLCSRLMVSKSNEIVLAPFNPGLI 135

[Close]
BLAST of CSPI03G21640 vs. NCBI nr
Match: gi|778665106|ref|XP_011648488.1| (PREDICTED: uncharacterized protein LOC105434490 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 118 AIAMFQSQKDIKKSRKQTLWRI--CPLQVESTECGYYVMRYRREIVTRGSIVISDAIDTR 177
           AI +F SQK+I+ +RKQ++W I  CPL V   E GYYVMRY R+I+T GSIV++D+IDT 
Sbjct: 89  AITIFFSQKNIQTTRKQSIWEIVKCPLHVGVVEYGYYVMRYMRDIITNGSIVVTDSIDTS 148

Query: 178 RSHSQAELDE 186
             +S+ ELDE
Sbjct: 149 SPYSKLELDE 158

[Close]
BLAST of CSPI03G21640 vs. NCBI nr
Match: gi|307136042|gb|ADN33894.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-08
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 140 CPLQVESTECGYYVMRYRREIVTRGSIVISDAIDTRRSHSQAELDE 186
           C LQV   ECGYYVMRY R+I+T GSIV++  IDTR S+SQ ELDE
Sbjct: 29  CHLQVGVVECGYYVMRYMRDIITNGSIVVTYLIDTRTSYSQLELDE 74

[Close]
BLAST of CSPI03G21640 vs. NCBI nr
Match: gi|659111296|ref|XP_008455679.1| (PREDICTED: uncharacterized protein LOC103495793 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 6   NKELGVDELNAIFGIEDDEHLGTENETSKQICRPRGPTIMFDVTHIRSLGEKKVVVY 63
           N+ELGV ELNA       E + T NET K++ R R PTIMFDVT IRSLG+KKVV Y
Sbjct: 229 NEELGVGELNATV-----EEIDTRNETPKELKRQREPTIMFDVTRIRSLGDKKVVRY 280

[Close]
BLAST of CSPI03G21640 vs. NCBI nr
Match: gi|985470249|ref|XP_015380943.1| (PREDICTED: uncharacterized protein LOC107174498 isoform X1 [Citrus sinensis])

HSP 1 Score: 60.1 bits (144), Expect = 5.1e-06
Identity = 39/143 (27.27%), Postives = 66/143 (46.15%), Query Frame = 1 

Query: 44  IMFDVTHIRSLGEKKVVVYLYSSVLGSKENVLYVFVDSSLTSV--EHTQESRVRNLCSRL 103
           +M  +T      + K + YL +       N  + F+  +      E T + + + L  R 
Sbjct: 13  LMRQITKQIQFLKSKKIRYLCAETKAKLINEKFGFIHPTTLCFLDESTFKQKAKTLADRF 72

Query: 104 MLSKSNEIVFAPFNPGAIAMFQSQKDIKKSRKQTLWRIC--PLQVESTECGYYVMRYRRE 163
               + + +F P+NP  I MF ++K  +  +    W     P+Q+ + ECGYYVMR+ +E
Sbjct: 73  QELSAKQFIFLPYNPSGIRMFLAKKGQQMKKINLKWNDVKVPMQIGNVECGYYVMRFMKE 132

Query: 164 IVTRGSI--VISDAIDTRRSHSQ 181
           I+   SI  V   A++  RS  Q
Sbjct: 133 IIADQSILCVKGYAVELYRSQGQ 155

The following BLAST results are available for this feature:
BLAST of CSPI03G21640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G21640 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBQ2_CUCME2.2e-0867.39Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI03G21640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G21640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778714234|ref|XP_011657210.1|4.9e-1776.67PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
gi|778665106|ref|XP_011648488.1|5.6e-1357.14PREDICTED: uncharacterized protein LOC105434490 [Cucumis sativus][more]
gi|307136042|gb|ADN33894.1|3.2e-0867.39hypothetical protein [Cucumis melo subsp. melo][more]
gi|659111296|ref|XP_008455679.1|2.1e-0761.40PREDICTED: uncharacterized protein LOC103495793 [Cucumis melo][more]
gi|985470249|ref|XP_015380943.1|5.1e-0627.27PREDICTED: uncharacterized protein LOC107174498 isoform X1 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21640.1CSPI03G21640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G21640Cucurbita maxima (Rimu)cmacpiB244
CSPI03G21640Cucurbita maxima (Rimu)cmacpiB458
CSPI03G21640Cucurbita moschata (Rifu)cmocpiB232
CSPI03G21640Cucurbita moschata (Rifu)cmocpiB446
CSPI03G21640Cucumber (Chinese Long) v2cpicuB120
CSPI03G21640Melon (DHL92) v3.5.1cpimeB243
CSPI03G21640Watermelon (Charleston Gray)cpiwcgB240
CSPI03G21640Watermelon (97103) v1cpiwmB245
CSPI03G21640Cucurbita pepo (Zucchini)cpecpiB552
CSPI03G21640Cucurbita pepo (Zucchini)cpecpiB602
CSPI03G21640Bottle gourd (USVL1VR-Ls)cpilsiB210
CSPI03G21640Melon (DHL92) v3.6.1cpimedB240
CSPI03G21640Cucumber (Gy14) v2cgybcpiB110
CSPI03G21640Silver-seed gourdcarcpiB0798
CSPI03G21640Cucumber (Chinese Long) v3cpicucB144
CSPI03G21640Watermelon (97103) v2cpiwmbB224
CSPI03G21640Cucumber (Gy14) v1cgycpiB554