CSPI03G21370 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21370
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 17608538 .. 17609008 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGGGCCTTCTACATTGCTCCTCAATTATGCAAAGAAAGATCCCCAGCAGTTGTCTTTTGCCCTCGGTGTGCCCGTTTTGTATGAAGGACAGTGAGGACCTGCTGCATCTCTTTTTTATCTGTCCTTATTCAGCCAATTGCTGGGGGAATATGCTCTTCCTTTTCAATGTGGCATGGGCTTTTGATGGATCATTAAGCTCGAAAGTCTTTCAACTGCTTAGGCGCCCGTTACTGTCAAAGAGACCGCAAATAAATTGGGAAAATATGTCGAAAGCAATGCTTGTGGAACTCTGGTTTGAACGTAATCAACGAATCTTTCATAACAAGGCAAGGGGCTGGTTTGAAACTTCGGACACGGCAAAAAGAAATGCAGCATCTTGGTGTTCTTTGAACAAGGAATATAATGAGTATTCCATTCAAGATTTATGCTTAAACTGGGCCGCTTTCATCTCTCAACCCATTTAA

mRNA sequence

ATGGCTTTGGGCCTTCTACATTGCTCCTCAATTATGCAAAGAAAGATCCCCAGCAGTTGTCTTTTGCCCTCGGTGTGCCCGTTTTGTATGAAGGACAGTGAGGACCTGCTGCATCTCTTTTTTATCTGTCCTTATTCAGCCAATTGCTGGGGGAATATGCTCTTCCTTTTCAATGTGGCATGGGCTTTTGATGGATCATTAAGCTCGAAAGTCTTTCAACTGCTTAGGCGCCCGTTACTGTCAAAGAGACCGCAAATAAATTGGGAAAATATGTCGAAAGCAATGCTTGTGGAACTCTGGTTTGAACGTAATCAACGAATCTTTCATAACAAGGCAAGGGGCTGGTTTGAAACTTCGGACACGGCAAAAAGAAATGCAGCATCTTGGTGTTCTTTGAACAAGGAATATAATGAGTATTCCATTCAAGATTTATGCTTAAACTGGGCCGCTTTCATCTCTCAACCCATTTAA

Coding sequence (CDS)

ATGGCTTTGGGCCTTCTACATTGCTCCTCAATTATGCAAAGAAAGATCCCCAGCAGTTGTCTTTTGCCCTCGGTGTGCCCGTTTTGTATGAAGGACAGTGAGGACCTGCTGCATCTCTTTTTTATCTGTCCTTATTCAGCCAATTGCTGGGGGAATATGCTCTTCCTTTTCAATGTGGCATGGGCTTTTGATGGATCATTAAGCTCGAAAGTCTTTCAACTGCTTAGGCGCCCGTTACTGTCAAAGAGACCGCAAATAAATTGGGAAAATATGTCGAAAGCAATGCTTGTGGAACTCTGGTTTGAACGTAATCAACGAATCTTTCATAACAAGGCAAGGGGCTGGTTTGAAACTTCGGACACGGCAAAAAGAAATGCAGCATCTTGGTGTTCTTTGAACAAGGAATATAATGAGTATTCCATTCAAGATTTATGCTTAAACTGGGCCGCTTTCATCTCTCAACCCATTTAA

Homology

[Close]

BLAST of CSPI03G21370 vs. TrEMBL
Match: F4NCL6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 43/136 (31.62%), Postives = 66/136 (48.53%), Query Frame = 1


Query: 24   SVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLSSKVFQLLRRPLLSKR 83
            ++CP C   +ED+ HLF  CPY+   WG  L ++N+ W +  SL    F+    P  +K 
Sbjct: 1088 TMCPLCSSWAEDVAHLFLFCPYAREIWGWWLKIWNLNWVWPSSL-VLAFEQWSFPSANKL 1147

Query: 84   PQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAASWCSLNKEYNEYSIQD 143
             +  W    + ++  LW ERN RIF+NKA    ET +        W    KE   Y++++
Sbjct: 1148 FKKVWAASFQIIVWSLWKERNARIFNNKASPAMETQNLILVRICWWMKAWKESCPYTVEE 1207

Query: 144  L-----CLNWAAFISQ 155
            +     CL W   + Q
Sbjct: 1208 VLRTPHCLQWGGALQQ 1222

[Close]

BLAST of CSPI03G21370 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 1


Query: 6    LHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDG 65
            L+ + ++Q + P   L P++C  CMK  E + HLF  C  +   W  +  L  + W    
Sbjct: 1719 LNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 1778

Query: 66   SLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRN 125
            S+S   F        SKR  + W++   A++  +W ERN RIF +KAR      D+ +  
Sbjct: 1779 SISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRFL 1838

Query: 126  AASWCSLNKEYNEYSIQDLCLNWAA 151
            A+ W   +K +    +  L L+W A
Sbjct: 1839 ASLWAFCSKVFKGIPLNMLQLDWLA 1863

[Close]

BLAST of CSPI03G21370 vs. TrEMBL
Match: F6H108_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 1


Query: 6   LHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDG 65
           L+ + ++Q + P   L P++C  CMK  E + HLF  C  +   W  +  L  + W    
Sbjct: 37  LNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 96

Query: 66  SLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRN 125
           S+S   F        SKR  + W++   A++  +W ERN RIF +KAR      D+ +  
Sbjct: 97  SISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRFL 156

Query: 126 AASWCSLNKEYNEYSIQDLCLNWAA 151
           A+ W   +K +    +  L L+W A
Sbjct: 157 ASLWAFCSKVFKGIPLNMLQLDWLA 181

[Close]

BLAST of CSPI03G21370 vs. TrEMBL
Match: A5BKH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 43/145 (29.66%), Postives = 68/145 (46.90%), Query Frame = 1


Query: 6   LHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDG 65
           L+ + ++Q + P   L P++C  CMK  E + HLF  C  +   W  +  L  + W    
Sbjct: 537 LNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 596

Query: 66  SLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRN 125
           S+S   F        SKR  + W++   A+   +W ERN RIF +KAR      D+ +  
Sbjct: 597 SISDMFFTNFNGFGSSKRGVVLWQDACIALKWVVWRERNARIFEDKARNSGFLWDSIRFL 656

Query: 126 AASWCSLNKEYNEYSIQDLCLNWAA 151
           A+ W   +K +    +  L L+W A
Sbjct: 657 ASLWAFCSKVFKGIPLNMLQLDWLA 681

[Close]

BLAST of CSPI03G21370 vs. TrEMBL
Match: A5BTG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 43/145 (29.66%), Postives = 68/145 (46.90%), Query Frame = 1


Query: 6    LHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDG 65
            L+ + ++Q + P   L P++C  CMK  E + HLF  C  +   W  +  L  + W    
Sbjct: 1159 LNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 1218

Query: 66   SLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRN 125
            S+S   F        SKR  + W++   A++  +W ERN RIF +KAR      D+    
Sbjct: 1219 SISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSICFL 1278

Query: 126  AASWCSLNKEYNEYSIQDLCLNWAA 151
            A+ W   +K +    +  L L+W A
Sbjct: 1279 ASLWAFCSKVFKGIPLNMLQLDWVA 1303

[Close]

BLAST of CSPI03G21370 vs. TAIR10
Match: AT3G25270.1 (AT3G25270.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.6e-06
Identity = 30/108 (27.78%), Postives = 48/108 (44.44%), Query Frame = 1


Query: 26  CPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLSSKVFQLLRRPLLSKRPQ 85
           C  C ++ E   HLFF C Y+   W               ++ +K+  LL   L +++PQ
Sbjct: 56  CHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQ 115

Query: 86  INWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAASWCSLN 134
           +   N++  +L  LW  RNQ +F  K+  W  T   A+ +   W   N
Sbjct: 116 LF--NLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTN 161

[Close]

BLAST of CSPI03G21370 vs. NCBI nr
Match: gi|332322187|emb|CCA66198.1| (hypothetical protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 43/136 (31.62%), Postives = 66/136 (48.53%), Query Frame = 1


Query: 24   SVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLSSKVFQLLRRPLLSKR 83
            ++CP C   +ED+ HLF  CPY+   WG  L ++N+ W +  SL    F+    P  +K 
Sbjct: 1088 TMCPLCSSWAEDVAHLFLFCPYAREIWGWWLKIWNLNWVWPSSL-VLAFEQWSFPSANKL 1147

Query: 84   PQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAASWCSLNKEYNEYSIQD 143
             +  W    + ++  LW ERN RIF+NKA    ET +        W    KE   Y++++
Sbjct: 1148 FKKVWAASFQIIVWSLWKERNARIFNNKASPAMETQNLILVRICWWMKAWKESCPYTVEE 1207

Query: 144  L-----CLNWAAFISQ 155
            +     CL W   + Q
Sbjct: 1208 VLRTPHCLQWGGALQQ 1222

[Close]

BLAST of CSPI03G21370 vs. NCBI nr
Match: gi|147802674|emb|CAN62051.1| (hypothetical protein VITISV_016641 [Vitis vinifera])

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 1


Query: 6    LHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDG 65
            L+ + ++Q + P   L P++C  CMK  E + HLF  C  +   W  +  L  + W    
Sbjct: 1719 LNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 1778

Query: 66   SLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRN 125
            S+S   F        SKR  + W++   A++  +W ERN RIF +KAR      D+ +  
Sbjct: 1779 SISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRFL 1838

Query: 126  AASWCSLNKEYNEYSIQDLCLNWAA 151
            A+ W   +K +    +  L L+W A
Sbjct: 1839 ASLWAFCSKVFKGIPLNMLQLDWLA 1863

[Close]

BLAST of CSPI03G21370 vs. NCBI nr
Match: gi|147792407|emb|CAN63585.1| (hypothetical protein VITISV_026806 [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 43/145 (29.66%), Postives = 68/145 (46.90%), Query Frame = 1


Query: 6   LHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDG 65
           L+ + ++Q + P   L P++C  CMK  E + HLF  C  +   W  +  L  + W    
Sbjct: 537 LNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 596

Query: 66  SLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRN 125
           S+S   F        SKR  + W++   A+   +W ERN RIF +KAR      D+ +  
Sbjct: 597 SISDMFFTNFNGFGSSKRGVVLWQDACIALKWVVWRERNARIFEDKARNSGFLWDSIRFL 656

Query: 126 AASWCSLNKEYNEYSIQDLCLNWAA 151
           A+ W   +K +    +  L L+W A
Sbjct: 657 ASLWAFCSKVFKGIPLNMLQLDWLA 681

[Close]

BLAST of CSPI03G21370 vs. NCBI nr
Match: gi|147815645|emb|CAN61757.1| (hypothetical protein VITISV_030741 [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 43/145 (29.66%), Postives = 68/145 (46.90%), Query Frame = 1


Query: 6    LHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDG 65
            L+ + ++Q + P   L P++C  CMK  E + HLF  C  +   W  +  L  + W    
Sbjct: 1159 LNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPR 1218

Query: 66   SLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRN 125
            S+S   F        SKR  + W++   A++  +W ERN RIF +KAR      D+    
Sbjct: 1219 SISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSICFL 1278

Query: 126  AASWCSLNKEYNEYSIQDLCLNWAA 151
            A+ W   +K +    +  L L+W A
Sbjct: 1279 ASLWAFCSKVFKGIPLNMLQLDWVA 1303

[Close]

BLAST of CSPI03G21370 vs. NCBI nr
Match: gi|147864302|emb|CAN78803.1| (hypothetical protein VITISV_032700 [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 4.6e-10
Identity = 42/148 (28.38%), Postives = 70/148 (47.30%), Query Frame = 1


Query: 6    LHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDG 65
            ++ + ++Q + P   L P +C  CMK  E   HLF  C  +   W  +  L  + W    
Sbjct: 857  VNTNDMLQVRRPYKALSPDICILCMKHGESADHLFLHCSLTIGLWHRLFQLAEMVWVPPR 916

Query: 66   SLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRN 125
            S+   +F   +    SKR  + W+  S A++  +W+ERN RIF +KAR      D+    
Sbjct: 917  SIYDMMFIKFKGFGNSKRGIVLWQAASIALIRVVWWERNARIFEDKARNSGFLWDSIVFL 976

Query: 126  AASWCSLNKEYNEYSIQDLCLNWAAFIS 154
            A+ W   +K +    +  + L+W A +S
Sbjct: 977  ASLWAFCSKAFKGIPLNVIQLDWKAVVS 1004

The following BLAST results are available for this feature:

BLAST of CSPI03G21370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G21370 vs. TrEMBL


Match Name	E-value	Identity	Description
F4NCL6_BETVU	1.3e-11	31.62	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]
A5C377_VITVI	6.5e-11	29.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1	[more]
F6H108_VITVI	6.5e-11	29.66	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07170 PE=4 SV=...	[more]
A5BKH7_VITVI	1.5e-10	29.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1	[more]
A5BTG1_VITVI	1.9e-10	29.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030741 PE=4 SV=1	[more]

BLAST of CSPI03G21370 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25270.1	9.6e-06	27.78	Ribonuclease H-like superfamily protein	[more]

BLAST of CSPI03G21370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|332322187\|emb\|CCA66198.1\|	1.9e-11	31.62	hypothetical protein [Beta vulgaris subsp. vulgaris]	[more]
gi\|147802674\|emb\|CAN62051.1\|	9.4e-11	29.66	hypothetical protein VITISV_016641 [Vitis vinifera]	[more]
gi\|147792407\|emb\|CAN63585.1\|	2.1e-10	29.66	hypothetical protein VITISV_026806 [Vitis vinifera]	[more]
gi\|147815645\|emb\|CAN61757.1\|	2.7e-10	29.66	hypothetical protein VITISV_030741 [Vitis vinifera]	[more]
gi\|147864302\|emb\|CAN78803.1\|	4.6e-10	28.38	hypothetical protein VITISV_032700 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21370.1	CSPI03G21370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21370	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21370	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21370	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21370	Silver-seed gourd	carcpiB0545
CSPI03G21370	Silver-seed gourd	carcpiB0798
CSPI03G21370	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21370	Watermelon (97103) v2	cpiwmbB224
CSPI03G21370	Wax gourd	cpiwgoB271
CSPI03G21370	Cucumber (Gy14) v1	cgycpiB554
CSPI03G21370	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21370	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21370	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21370	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21370	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21370	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21370	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21370	Watermelon (97103) v1	cpiwmB245
CSPI03G21370	Cucurbita pepo (Zucchini)	cpecpiB552
CSPI03G21370	Cucurbita pepo (Zucchini)	cpecpiB602