CSPI03G21360 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21360
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LINE-1 reverse transcriptase like
Location	Chr3 : 17605966 .. 17608195 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAATCAGCAACTTGTTAAAGAAGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATTTGTGCAACAAGTTGGGCATGATCGACATATTTGCTCCAGCTTGAGGGGGAGTGTTATGATATATATATACATATGTCCTTTATTGTAATTTTACATAGTCTCTAGGGTTTAGTTTATTCTCTATATAAATATGTAACATTGCTTTGACTCAAATATAATAAGTCAGATATTTCTCTGAATTCTAGATTACAATAGGAATATTGTTAGGAAATAACTAGAGTGCTAAGGGCATATTAGAAATTTGCTACAGAAGTTGTTTTGGTAACTTGTTATAAAGAGAGGGAGTGGGGAAGGGAAAAGGCAGGCATCATTTCAATAAGTGATTTAGGGCTTGATGAAATTGTTAAGAGAGGAAAGGTCCAAGATCTCAAATACATAGTTTATCTTGTAATTGCACTACCATTATCTCTCAGCATATTCCCCAATTGTGATATAATCGAATTGGCTAGTTGTGGAGGATGAGAATGCTGGTTTTTTCCATCATTTTCTAAATGCAAAAAAAAAAGAGGAATCTAATTACAGAGTTGATTGACATTGAAAGGCTTATTTTGGGTTTTTGATGTTCTTTACAAAAGAATTCCAGGAGAACGATTCATTCTATTTATCACTTATTGGCCTTGTGTCACTCCCAATCAAAATCCGCTACTTGTTACCTGTTTCTCACATGAAGAAATCTTCAGGCAGCAAAGGATCTTGGAAGGAACAAAGCTCTGGGTTCGGATGGCTTTACCGCGAATTTCCTTGTTAAACATTGACATAAGCTCAAGTACACCTTTAAAAACCTGCTTGATGATTTTCACAATAATGGAAGGTTAAATGCTCGTGTCCAAGAAAACTTCATTTGTTTGTCCCAAAAGAAAGAAGATGTGATTCATGTTAAAGATTTCAAACCTATCAGCCTCACTACCCTAACCTACAAGGTGGTGGCCAAAGTTTTAGCGGAACGTTTGAAACAGGTTATGGATTCAATTGTAAGCCCATCCCAAAGTGCCTTTATCGAGGGAAGGCAGATTTTAGATTCAGTTTTAATTGCTCATGAGGCAGTTGAAGATTATCATGCTAAAAAGAAAAGGGGATGGATTCTGAAACTTCTTGAGAAGGCCTTTGATAGAGCGGAATGGGGATTCCTTCAAAAGGTAATGCACTGCAAAAATTCAACTCCTAAAGGTCAGTTTGGATGGTGGGCTGTTGGAAAAATCGAAGTTTTTCCATATTCATCAATGGGAAACCAAGGGACAGGATTGTGGCTTCTAGAGGCATCCAACAAGGAAACCCCGTTCACATTTTTTATTTCTTCTTGTCAGCAGGTTCTAGGAGCTATCATCAATAAGCTGTACGTTAATGGGCATTATGAAGGTTTCGTGACTGGAAAGGAGAAGATCCACATCCCCATCCTCCAATACACTGATGATACACTCCTATTTTGCAAGTATGATGAGGATCTGCTTCTCAAGTTGAAGGAGGCTATTAGATTGTTTGAATGGAGTTCAGGGCAGAAAATTAATCGGAATAAATCAGCTCTCAGGGGAGTTAATGTGGATGATGAAGATCTGTCTCAAATGGCCAGAAAACTAGGGTGTAAGGCGGGAAAGCTTCCATTTTTGTACTTAGGACTTCCCTTGGGAGGTTATCCGAGGCAAAAGTTATTCTGGCAACCAGTGATTGACCGGGTTCATAAAGAACTGGATAGATTGAAAAGGTTTAATATTTCAAGAGGAGGAAGACAAACTGTATGTAAGTCAGTTTTGGCCAACCTTCCCACTTATTATTCGTCTCTCTTTGCCATCCCTGACAATGTGACTTCTTCCTTGAATGAGAAACTTCTTCTGGGAAGGGCAATCCGGAAGTAAAATAAATCATCTGGTGAATTGGAAAAAGGTTATACTTTCTCAGCTTGATGGGGGCCTTGGGTTAGGAGGCATAAAAATTCAAAACACAGCTCTACTTGCTAAATGGGGGTGGAGATTCTTAGTGGAAGAGCCCTTTGATTGGCACACGGTGGGTAAATCCAGTAATAGTTTGAAGAGTCATTGGGTTAGTATTTCAAGAGCTTGGAGGAAGGTGGAAGCTTTGGCTTTGTTAAGCTTGGTAATGGAAGAAAAATTGCTTTTTGGAAAGACTTATGGATCGGTGACATCCCCCTAA

mRNA sequence

ATGCCAAATCAGCAACTTGTTAAAGAAGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATTTGTGCAACAAAAATCTTCAGGCAGCAAAGGATCTTGGAAGGAACAAAGCTCTGGGTTCGGATGGCTTTACCGCGAATTTCCTTAAAGAAGATGTGATTCATGTTAAAGATTTCAAACCTATCAGCCTCACTACCCTAACCTACAAGGTGGTGGCCAAAGTTTTAGCGGAACGTTTGAAACAGGTTATGGATTCAATTGTAAGCCCATCCCAAAGTGCCTTTATCGAGGGAAGGCAGATTTTAGATTCAGTTTTAATTGCTCATGAGGCAGTTGAAGATTATCATGCTAAAAAGAAAAGGGGATGGATTCTGAAACTTCTTGAGAAGGCCTTTGATAGAGCGGAATGGGGATTCCTTCAAAAGGTAATGCACTGCAAAAATTCAACTCCTAAAGGTCAGTTTGGATGGTGGGCTGTTGGAAAAATCGAAGTTTTTCCATATTCATCAATGGGAAACCAAGGGACAGGATTGTGGCTTCTAGAGGCATCCAACAAGGAAACCCCGTTCACATTTTTTATTTCTTCTTGTCAGCAGGTTCTAGGAGCTATCATCAATAAGCTGTACGTTAATGGGCATTATGAAGGTTTCGTGACTGGAAAGGAGAAGATCCACATCCCCATCCTCCAATACACTGATGATACACTCCTATTTTGCAAGTATGATGAGGATCTGCTTCTCAAGTTGAAGGAGGCTATTAGATTGTTTGAATGGAGTTCAGGGCAGAAAATTAATCGGAATAAATCAGCTCTCAGGGGAGTTAATGTGGATGATGAAGATCTGTCTCAAATGGCCAGAAAACTAGGGTGTAAGGCGGGAAAGCTTCCATTTTTGTACTTAGGACTTCCCTTGGGAGGTTATCCGAGGCAAAAGTTATTCTGGCAACCAGTGATTGACCGGGTTCATAAAGAACTGGATAGATTGAAAAGGTTTAATATTTCAAGAGGAGGAAGACAAACTGTATGTAAGTCAGTTTTGGCCAACCTTCCCACTTATTATTCGTCTCTCTTTGCCATCCCTGACAATCTTGATGGGGGCCTTGGGTTAGGAGGCATAAAAATTCAAAACACAGCTCTACTTGCTAAATGGGGGTGGAGATTCTTAGTGGAAGAGCCCTTTGATTGGCACACGGTGGGTAAATCCAGTAATAGTTTGAAGAGTCATTGGGTTAGTATTTCAAGAGCTTGGAGGAAGGTGGAAGCTTTGGCTTTGTTAAGCTTGGTAATGGAAGAAAAATTGCTTTTTGGAAAGACTTATGGATCGGTGACATCCCCCTAA

Coding sequence (CDS)

ATGCCAAATCAGCAACTTGTTAAAGAAGGAGAACAATTGGGAGATATTCTAACTAAAGCTTTAAATGGAACAAGGATAAGCTATTTGTGCAACAAAAATCTTCAGGCAGCAAAGGATCTTGGAAGGAACAAAGCTCTGGGTTCGGATGGCTTTACCGCGAATTTCCTTAAAGAAGATGTGATTCATGTTAAAGATTTCAAACCTATCAGCCTCACTACCCTAACCTACAAGGTGGTGGCCAAAGTTTTAGCGGAACGTTTGAAACAGGTTATGGATTCAATTGTAAGCCCATCCCAAAGTGCCTTTATCGAGGGAAGGCAGATTTTAGATTCAGTTTTAATTGCTCATGAGGCAGTTGAAGATTATCATGCTAAAAAGAAAAGGGGATGGATTCTGAAACTTCTTGAGAAGGCCTTTGATAGAGCGGAATGGGGATTCCTTCAAAAGGTAATGCACTGCAAAAATTCAACTCCTAAAGGTCAGTTTGGATGGTGGGCTGTTGGAAAAATCGAAGTTTTTCCATATTCATCAATGGGAAACCAAGGGACAGGATTGTGGCTTCTAGAGGCATCCAACAAGGAAACCCCGTTCACATTTTTTATTTCTTCTTGTCAGCAGGTTCTAGGAGCTATCATCAATAAGCTGTACGTTAATGGGCATTATGAAGGTTTCGTGACTGGAAAGGAGAAGATCCACATCCCCATCCTCCAATACACTGATGATACACTCCTATTTTGCAAGTATGATGAGGATCTGCTTCTCAAGTTGAAGGAGGCTATTAGATTGTTTGAATGGAGTTCAGGGCAGAAAATTAATCGGAATAAATCAGCTCTCAGGGGAGTTAATGTGGATGATGAAGATCTGTCTCAAATGGCCAGAAAACTAGGGTGTAAGGCGGGAAAGCTTCCATTTTTGTACTTAGGACTTCCCTTGGGAGGTTATCCGAGGCAAAAGTTATTCTGGCAACCAGTGATTGACCGGGTTCATAAAGAACTGGATAGATTGAAAAGGTTTAATATTTCAAGAGGAGGAAGACAAACTGTATGTAAGTCAGTTTTGGCCAACCTTCCCACTTATTATTCGTCTCTCTTTGCCATCCCTGACAATCTTGATGGGGGCCTTGGGTTAGGAGGCATAAAAATTCAAAACACAGCTCTACTTGCTAAATGGGGGTGGAGATTCTTAGTGGAAGAGCCCTTTGATTGGCACACGGTGGGTAAATCCAGTAATAGTTTGAAGAGTCATTGGGTTAGTATTTCAAGAGCTTGGAGGAAGGTGGAAGCTTTGGCTTTGTTAAGCTTGGTAATGGAAGAAAAATTGCTTTTTGGAAAGACTTATGGATCGGTGACATCCCCCTAA

Homology

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BLAST of CSPI03G21360 vs. Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-09
Identity = 79/314 (25.16%), Postives = 140/314 (44.59%), Query Frame = 1


Query: 57  KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
           K D+  +K+++P+SL +  YK+VAK ++ RLK V+  ++ P QS  + GR I D+V +  
Sbjct: 516 KGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIR 575

Query: 117 EAVEDYHAKKKRGWILKLL----EKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEV 176
           + +   H  ++ G  L  L    EKAFDR +  +L   +   +      FG   VG ++ 
Sbjct: 576 DLL---HFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYS------FGPQFVGYLKT 635

Query: 177 FPYSSMGNQGTGLWLLEASNKETPFTFFISSCQ------QVLGAIINKL--YVNGHYEGF 236
             Y+S        W L A     P  F     Q      Q+    I      +     G 
Sbjct: 636 M-YASAECLVKINWSLTA-----PLAFGRGVRQGCPLSGQLYSLAIEPFLCLLRKRLTGL 695

Query: 237 VTGKEKIHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSA-LRGVNV 296
           V  +  + + +  Y DD +L  +   D L + +E   ++  +S  +IN +KS+ L   ++
Sbjct: 696 VLKEPDMRVVLSAYADDVILVAQDLVD-LERAQECQEVYAAASSARINWSKSSGLLEGSL 755

Query: 297 DDEDLSQMARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFN--IS 356
             + L    R +  ++  + +L + L    YP  + F + + + V   L + K F   +S
Sbjct: 756 KVDFLPPAFRDISWESKIIKYLGVYLSAEEYPVSQNFIE-LEECVLTRLGKWKGFAKVLS 812

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BLAST of CSPI03G21360 vs. Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-09
Identity = 66/237 (27.85%), Postives = 105/237 (44.30%), Query Frame = 1


Query: 57  KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQ----ILDSV 116
           ++D   +++F+PISL  +  K++ K+LA R+++ + +I+ P Q  FI G Q    I  S+
Sbjct: 528 QKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSI 587

Query: 117 LIAHEAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMH-----------CKNSTPKG 176
            + H   +    K K   I+ L  EKAFD+ +  F+ KV+             K    K 
Sbjct: 588 NVIHYINK---LKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKP 647

Query: 177 QFGWWAVG-KIEVFPYSSMGNQGTGLWLLEASNKETPFTFFISSCQQVLGAIINKLYVNG 236
                  G K+E  P  S   QG  L         +P+ F I     VL  +   +    
Sbjct: 648 VANIKVNGEKLEAIPLKSGTRQGCPL---------SPYLFNI-----VLEVLARAIRQQK 707

Query: 237 HYEGFVTGKEKIHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKS 277
             +G   GKE++ I +L   DD +++    ++   +L   I  F    G KIN NKS
Sbjct: 708 EIKGIQIGKEEVKISLL--ADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKS 745

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BLAST of CSPI03G21360 vs. Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.0e-06
Identity = 58/227 (25.55%), Postives = 106/227 (46.70%), Query Frame = 1


Query: 58  EDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAHE 117
           +D    ++++PISL  +  K++ K+L  R++Q +  I+   Q  FI G Q   ++  +  
Sbjct: 521 KDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSIN 580

Query: 118 AVEDYH-AKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 177
            ++  +  K K   IL +  EKAFD  +  F+ + +  K    +G F    +  I   P 
Sbjct: 581 VIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTL--KKIGIEGTF-LKLIEAIYSKPT 640

Query: 178 SSMGNQGTGL--WLLEASNKE----TPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKE 237
           +++   G  L  + L +  ++    +P  F I    +VL   I +       +G   G E
Sbjct: 641 ANIILNGVKLKSFPLRSGTRQGCPLSPLLFNI--VMEVLAIAIRE---EKAIKGIHIGSE 700

Query: 238 KIHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKS 277
           +I + +  + DD +++ +   D   KL E I+ +   SG KIN +KS
Sbjct: 701 EIKLSL--FADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKS 737

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BLAST of CSPI03G21360 vs. TrEMBL
Match: A5C9Z3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009132 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-58
Identity = 135/390 (34.62%), Postives = 202/390 (51.79%), Query Frame = 1


Query: 57   KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
            K     + D++PISL T  YK++AKVL+ RL++V+   +S SQ AF+EGR ILD  LIA+
Sbjct: 1219 KSQSFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETISGSQGAFVEGRHILDVALIAN 1278

Query: 117  EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
            E V++     K G + K+  EKA+D  +WGFL  V+  K  + K +   W  G +    +
Sbjct: 1279 EVVDEKRRSGKEGIVFKIDFEKAYDHVDWGFLDHVLQRKGFSQKWRS--WIRGCLSSSSF 1338

Query: 177  SSMGNQGTGLWL-----LEASNKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKEK 236
            + + N     W+     L   +  +PF F + +   VL  ++ +    G  EGF  G+++
Sbjct: 1339 TILVNGNAKGWVKASRGLRQGDPLSPFLFTLVA--DVLSRLLFRAEETGLTEGFSVGRDR 1398

Query: 237  IHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLSQ 296
              + +LQ+ DDT++F K   + L  LK  + +F   SG KIN  KS + G+N   E LS 
Sbjct: 1399 TRVSLLQFADDTIIFSKASLEHLQNLKIILLVFGQVSGLKINLEKSTISGINTRQELLSS 1458

Query: 297  MARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVCK 356
            +     C+  + P  YLGLPLGG P+   FW PV++R+ + LD  K+  +S GGR T+ +
Sbjct: 1459 LTSVFYCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRITLIQ 1518

Query: 357  SVLANLPTYYSSLFAIPDNLD-----------------------------------GGLG 406
            S L+++P+Y+ SLF I  ++                                    GGLG
Sbjct: 1519 SCLSHIPSYFLSLFKISASIASKIEKMQGNFLWSGAREGKKDHLVKWEVVSRPKELGGLG 1578

[Close]

BLAST of CSPI03G21360 vs. TrEMBL
Match: A5BZG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042643 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.2e-58
Identity = 137/394 (34.77%), Postives = 209/394 (53.05%), Query Frame = 1


Query: 57  KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
           K     + D++PISL T  YK++AKVL+ RL++V+   +  SQ AF+EGRQILD+VLIA+
Sbjct: 5   KSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETIFGSQGAFVEGRQILDAVLIAN 64

Query: 117 EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
           E V++     + G + K+  EKA+D  EWGFL  V+  K  + K +   W  G +    +
Sbjct: 65  EVVDEKRRSGEEGVVFKIDFEKAYDHVEWGFLDHVLQRKGFSQKWRA--WMRGCLSSSSF 124

Query: 177 SSMGNQGTGLWL-----LEASNKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKEK 236
           + + N     W+     L   +  +PF F + +   VL  ++ +    G  EGF+ G+++
Sbjct: 125 AILVNGNAKGWVKASRGLRQGDPLSPFLFTLVA--DVLSRLMIRAEEAGITEGFLVGRDR 184

Query: 237 IHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLSQ 296
             + +LQ+ DDT+ F K   DLL  LK  + +F   SG KIN  KS + G+N   E LS 
Sbjct: 185 TRVSLLQFADDTIFFSKASLDLLQNLKIILLVFGQVSGLKINLEKSTISGINTRQEMLSS 244

Query: 297 MARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVCK 356
           +A  L C+  + P  YLGLPLGG P+   FW PV++R+ + LD  K+  +S GGR T+ +
Sbjct: 245 LALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKTYLSLGGRITLIQ 304

Query: 357 SVLANLPTYYSSLFAIPDNLDGGLGLGGIKIQNTALLAKWGWRFLVEEPFDWHTVGKSSN 416
           S L+++P+Y+ SLF IP ++         KI+             ++  F W  VG+   
Sbjct: 305 SCLSHIPSYFLSLFKIPVSI-------ASKIEK------------MQRDFLWSGVGEGKR 364

Query: 417 SLKSHWVSISRAWRKVEALALLSLVMEEKLLFGK 445
                W  +SR  R++  L      M    L GK
Sbjct: 365 DHLIRWEVVSRP-REMGGLGFGKTSMRNSALLGK 374

[Close]

BLAST of CSPI03G21360 vs. TrEMBL
Match: A5AFR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.7e-57
Identity = 136/394 (34.52%), Postives = 208/394 (52.79%), Query Frame = 1


Query: 57  KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
           K     + D++PISL T  YK++AKVL+ RL++V+   +  SQ AF+EGRQILD+VLIA+
Sbjct: 354 KSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETIFGSQGAFVEGRQILDAVLIAN 413

Query: 117 EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
           E V++     + G + K+  EKA+D  EWGFL  V+  K  + K +   W  G +    +
Sbjct: 414 EVVDEKRRSGEEGVVFKIDFEKAYDHVEWGFLDHVLQRKGFSQKWRA--WMRGCLSSSSF 473

Query: 177 SSMGNQGTGLWL-----LEASNKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKEK 236
           + + N     W+     L   +  +PF F + +   VL  ++ +    G  EGF+ G+++
Sbjct: 474 AILVNGNAKGWVKASRGLRQGDPLSPFLFTLVA--DVLSRLMIRAEEAGITEGFLVGRDR 533

Query: 237 IHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLSQ 296
             + +LQ+ DDT+ F K   DLL  LK  + +F   SG KIN  KS + G+N   E LS 
Sbjct: 534 TRVSLLQFADDTIFFSKASLDLLQNLKIILLVFGQVSGLKINLEKSTISGINTRQEMLSS 593

Query: 297 MARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVCK 356
           +A  L C+  + P  YLGLPLGG P+   FW PV++R+ + LD  K+  +S GGR T+ +
Sbjct: 594 LALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRITLIQ 653

Query: 357 SVLANLPTYYSSLFAIPDNLDGGLGLGGIKIQNTALLAKWGWRFLVEEPFDWHTVGKSSN 416
           S L+++P+Y+ SLF IP ++         KI+             ++  F W   G+   
Sbjct: 654 SCLSHIPSYFLSLFKIPVSI-------ASKIEK------------MQRDFLWSGAGEGKR 713

Query: 417 SLKSHWVSISRAWRKVEALALLSLVMEEKLLFGK 445
                W  +SR  R++  L      M    L GK
Sbjct: 714 DHLIRWEVVSRP-REMGGLGFGKTSMRNSALLGK 723

[Close]

BLAST of CSPI03G21360 vs. TrEMBL
Match: M5WKV4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.5e-57
Identity = 126/317 (39.75%), Postives = 192/317 (60.57%), Query Frame = 1


Query: 57  KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
           K + + V D++PISL T  YKV++KVLA RL++V+ + +S SQ AF++ RQILD+VL+A+
Sbjct: 245 KANSVKVTDYRPISLVTSLYKVISKVLASRLREVLGNTISQSQGAFVQKRQILDAVLVAN 304

Query: 117 EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
           E VE+   +K++G + K+  EKA+D  EW F+  V+  K    K +   W +G +E   +
Sbjct: 305 EVVEEVRKQKRKGLVFKIDFEKAYDHVEWNFVDDVLARKGFGAKWR--GWIIGCLESVNF 364

Query: 177 SSMGN-QGTGLWL----LEASNKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKEK 236
           S M N +  G +     L   +  +PF F + S   VL  II +        G V+G ++
Sbjct: 365 SIMINGKPRGKFRASRGLRQGDPLSPFLFTLVS--DVLSRIIERAQDVNLVHGIVSGHDQ 424

Query: 237 IHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLSQ 296
           + +  LQ+ DDT+      E+  L L + ++LF   SG KIN+ KS + G+N   + L+ 
Sbjct: 425 VEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCEVSGMKINKAKSCILGINFSTDALNN 484

Query: 297 MARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVCK 356
           MA   GC+ G  P +YLGLPLGG PR   FW PV+D+V K L + KR  +S+GGR T+ +
Sbjct: 485 MAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMDKVEKRLQKWKRACLSKGGRLTLIQ 544

Query: 357 SVLANLPTYYSSLFAIP 368
           +VL+++P+YY SLF +P
Sbjct: 545 AVLSSIPSYYMSLFKMP 557

[Close]

BLAST of CSPI03G21360 vs. TrEMBL
Match: M5XUF8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015473mg PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.5e-57
Identity = 139/384 (36.20%), Postives = 209/384 (54.43%), Query Frame = 1


Query: 57   KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
            K++ I V DF+PISL T  YK+V+KVLA RL++V+ S +S  QSAF++GRQILD+ LIA+
Sbjct: 756  KKESIKVSDFRPISLVTSLYKMVSKVLASRLREVLGSTISSYQSAFVQGRQILDAALIAN 815

Query: 117  EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
            E VE+     K G + K+ LEKA+D  EW F+ +V+  K    + +   W  G +E   +
Sbjct: 816  EVVEESRRLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRS--WIRGCLETANF 875

Query: 177  SSMGNQGTGLWLLEAS------NKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKE 236
            S M N G     + AS      +  +PF F +     VL  I+ K      + G   G  
Sbjct: 876  SVMIN-GRPRGKIRASRGLRQGDPLSPFLFTL--VMDVLSRIMEKAQDTDQFHGLSPGHG 935

Query: 237  KIHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLS 296
             + +  LQ+ DDT+ F +  E+    L + + LF + SG KIN++K +L G+N+DD  L+
Sbjct: 936  MVEVSHLQFADDTIFFIEDKEEYWNNLLQILELFCFVSGMKINKSKCSLVGINLDDGLLN 995

Query: 297  QMARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVC 356
            ++A   GC+ G  P  YLGLPLGG PR   FW PV+++V   L + KR  +S+GGR T+ 
Sbjct: 996  ELAGAWGCEVGAWPMSYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMI 1055

Query: 357  KSVLANLPTYYSSLFAIPDNLDGGLGLGGIKIQNTALLAKWGWRFLVEE---PFDWHTVG 416
            ++VL ++P YY S+F IP          G+  +   L+  + W  L  +      W  VG
Sbjct: 1056 QAVLCSIPIYYMSVFRIPI---------GVANRIEKLMRDFLWEGLDRKRNHAVSWEVVG 1115

Query: 417  KSS-------NSLKSHWVSISRAW 424
            K+         SL++   ++   W
Sbjct: 1116 KAKFCGGLGVGSLRARSAALRAKW 1125

[Close]

BLAST of CSPI03G21360 vs. TAIR10
Match: AT4G20520.1 (AT4G20520.1 RNA binding;RNA-directed DNA polymerases)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-08
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 1


Query: 83  LAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAHEAVEDYHAKK-KRGW-ILKL-LEKAF 142
           + ERLK +M +++ P+Q++FI GR   D+++   EAV     KK  +GW +LKL LEKA+
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

Query: 143 DRAEWGFLQKVM 152
           DR  W +L+  +
Sbjct: 61  DRIRWDYLEDTL 72

[Close]

BLAST of CSPI03G21360 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica])

HSP 1 Score: 236.1 bits (601), Expect = 1.2e-58
Identity = 138/325 (42.46%), Postives = 192/325 (59.08%), Query Frame = 1


Query: 57   KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
            K D + V DF+PISL T  YK++AK LA RLK+V+ S +S +Q AF++ RQILD+VLIA+
Sbjct: 1051 KSDSMKVTDFRPISLVTGLYKIMAKTLASRLKEVLGSTISQNQGAFVKDRQILDAVLIAN 1110

Query: 117  EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
            E VE+   KK+ G +LK+  EKA+D  EW FL +V+  K+     ++  W  G +    +
Sbjct: 1111 EVVEEVRQKKEEGLVLKIDFEKAYDHVEWRFLDEVLQRKSFG--NRWRKWMQGCLSSANF 1170

Query: 177  SSMGNQGTGLWLLEAS------NKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKE 236
            S + N G      +AS      +  +PF F +     VL  ++ K   N   +G   G+E
Sbjct: 1171 SVLIN-GRPRGKFQASRGLRQGDPLSPFLFTL--VVDVLSRLMEKAQENHLIKGLCIGQE 1230

Query: 237  KIHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLS 296
            K+ I  LQ+ DDT+ F   DE     L E ++LF   SG KIN+ K  L G+N D E L+
Sbjct: 1231 KVEIXHLQFADDTIFFLAEDEGGWNNLLELLKLFCSVSGLKINKAKCYLAGINSDCEKLN 1290

Query: 297  QMARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVC 356
            ++A   GC+ G  P  YLGLPLGG PR   FW PV+D++ K L   K+  +SRGGR T+ 
Sbjct: 1291 RLADSWGCEVGSWPIKYLGLPLGGRPRALKFWDPVVDKMEKRLQSWKKAFLSRGGRLTLI 1350

Query: 357  KSVLANLPTYYSSLFAIPDNLDGGL 375
            +SVL +LPTYY SLF +P  + G L
Sbjct: 1351 QSVLGSLPTYYMSLFKMPCGVIGRL 1370

[Close]

BLAST of CSPI03G21360 vs. NCBI nr
Match: gi|147800123|emb|CAN68820.1| (hypothetical protein VITISV_009132 [Vitis vinifera])

HSP 1 Score: 235.0 bits (598), Expect = 2.7e-58
Identity = 135/390 (34.62%), Postives = 202/390 (51.79%), Query Frame = 1


Query: 57   KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
            K     + D++PISL T  YK++AKVL+ RL++V+   +S SQ AF+EGR ILD  LIA+
Sbjct: 1219 KSQSFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETISGSQGAFVEGRHILDVALIAN 1278

Query: 117  EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
            E V++     K G + K+  EKA+D  +WGFL  V+  K  + K +   W  G +    +
Sbjct: 1279 EVVDEKRRSGKEGIVFKIDFEKAYDHVDWGFLDHVLQRKGFSQKWRS--WIRGCLSSSSF 1338

Query: 177  SSMGNQGTGLWL-----LEASNKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKEK 236
            + + N     W+     L   +  +PF F + +   VL  ++ +    G  EGF  G+++
Sbjct: 1339 TILVNGNAKGWVKASRGLRQGDPLSPFLFTLVA--DVLSRLLFRAEETGLTEGFSVGRDR 1398

Query: 237  IHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLSQ 296
              + +LQ+ DDT++F K   + L  LK  + +F   SG KIN  KS + G+N   E LS 
Sbjct: 1399 TRVSLLQFADDTIIFSKASLEHLQNLKIILLVFGQVSGLKINLEKSTISGINTRQELLSS 1458

Query: 297  MARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVCK 356
            +     C+  + P  YLGLPLGG P+   FW PV++R+ + LD  K+  +S GGR T+ +
Sbjct: 1459 LTSVFYCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRITLIQ 1518

Query: 357  SVLANLPTYYSSLFAIPDNLD-----------------------------------GGLG 406
            S L+++P+Y+ SLF I  ++                                    GGLG
Sbjct: 1519 SCLSHIPSYFLSLFKISASIASKIEKMQGNFLWSGAREGKKDHLVKWEVVSRPKELGGLG 1578

[Close]

BLAST of CSPI03G21360 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 234.2 bits (596), Expect = 4.5e-58
Identity = 136/324 (41.98%), Postives = 191/324 (58.95%), Query Frame = 1


Query: 57   KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
            K D + V DF+PISL T  YK++AK LA RLK+V+ S +S +Q AF++ RQILD+VLIA+
Sbjct: 1502 KSDSMKVTDFRPISLVTGLYKIMAKTLASRLKEVLGSTISQNQGAFVKDRQILDAVLIAN 1561

Query: 117  EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
            E VE+   KK+ G +LK+  EKA+D  EW FL +V+  K+     ++  W  G +    +
Sbjct: 1562 EVVEEVRQKKEEGLVLKIDFEKAYDHVEWRFLDEVLQRKSFG--NRWRKWMQGCLSSANF 1621

Query: 177  SSMGN-QGTGLWL----LEASNKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKEK 236
            S + N +  G +     L   +  +PF F +     VL  ++ K   N   +G   G+EK
Sbjct: 1622 SVLINGRPRGKFQXSRGLRQGDPLSPFLFTL--VVDVLSRLMEKAQENHLIKGLCIGQEK 1681

Query: 237  IHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLSQ 296
            + I  LQ+ DDT+ F    E     L E ++LF   SG KIN+ K  L G+N D E L++
Sbjct: 1682 VEIXHLQFADDTIFFLAXXEGGWNNLLELLKLFCSVSGLKINKAKCYLXGINSDCEKLNR 1741

Query: 297  MARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVCK 356
            +A   GC+ G  P  YLGLPLGG PR   FW PV+D++ K L   K+  +SRGGR T+ +
Sbjct: 1742 LADSWGCEVGSXPIKYLGLPLGGRPRALKFWDPVVDKMEKRLQSWKKAFLSRGGRLTLIQ 1801

Query: 357  SVLANLPTYYSSLFAIPDNLDGGL 375
            SVL +LPTYY SLF +P  + G L
Sbjct: 1802 SVLGSLPTYYMSLFKMPCGVIGRL 1821

[Close]

BLAST of CSPI03G21360 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 233.8 bits (595), Expect = 5.9e-58
Identity = 136/325 (41.85%), Postives = 191/325 (58.77%), Query Frame = 1


Query: 57  KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
           K D + V DF+PISL T  YK++AK LA RLK+V+ S +S +Q AF++ RQILD+VLIA+
Sbjct: 28  KSDSMKVTDFRPISLVTGLYKIMAKTLASRLKEVLGSTISQNQGAFVKDRQILDAVLIAN 87

Query: 117 EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
           E VE+   KK+ G +LK+  EKA+D  EW FL +V+  K+     ++  W  G +    +
Sbjct: 88  EVVEEVRQKKEEGLVLKIDFEKAYDHVEWRFLDEVLQRKSFG--NRWRKWMQGCLSSANF 147

Query: 177 SSMGNQGTGLWLLEAS------NKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKE 236
           S + N G      +AS      +  +PF F +     VL  ++ K   N   +G   G+E
Sbjct: 148 SVLIN-GRPRGKFQASRGLRQGDPLSPFLFTL--VVDVLSRLMEKAQENHLIKGLCIGQE 207

Query: 237 KIHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLS 296
           K+ I  LQ+ DDT+ F   +E     L E ++LF   SG KIN+ K  L G+N D E L+
Sbjct: 208 KVEISHLQFADDTIFFLAXBEGGWNNLLELLKLFCSVSGLKINKAKCYLAGINSDCEKLN 267

Query: 297 QMARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVC 356
           ++A   GC+ G  P  YLGLPLGG PR   FW P +D++ K L   K+  +SRGGR T+ 
Sbjct: 268 RLADSWGCEVGSWPIKYLGLPLGGRPRALKFWDPXVDKMEKRLQSWKKAFLSRGGRLTLI 327

Query: 357 KSVLANLPTYYSSLFAIPDNLDGGL 375
           +SVL +LPTYY SLF +P  + G L
Sbjct: 328 QSVLGSLPTYYMSLFKMPCGVIGRL 347

[Close]

BLAST of CSPI03G21360 vs. NCBI nr
Match: gi|147802490|emb|CAN75156.1| (hypothetical protein VITISV_042643 [Vitis vinifera])

HSP 1 Score: 232.6 bits (592), Expect = 1.3e-57
Identity = 137/394 (34.77%), Postives = 209/394 (53.05%), Query Frame = 1


Query: 57  KEDVIHVKDFKPISLTTLTYKVVAKVLAERLKQVMDSIVSPSQSAFIEGRQILDSVLIAH 116
           K     + D++PISL T  YK++AKVL+ RL++V+   +  SQ AF+EGRQILD+VLIA+
Sbjct: 5   KSQTFKISDYRPISLVTSLYKIIAKVLSGRLRKVLHETIFGSQGAFVEGRQILDAVLIAN 64

Query: 117 EAVEDYHAKKKRGWILKL-LEKAFDRAEWGFLQKVMHCKNSTPKGQFGWWAVGKIEVFPY 176
           E V++     + G + K+  EKA+D  EWGFL  V+  K  + K +   W  G +    +
Sbjct: 65  EVVDEKRRSGEEGVVFKIDFEKAYDHVEWGFLDHVLQRKGFSQKWRA--WMRGCLSSSSF 124

Query: 177 SSMGNQGTGLWL-----LEASNKETPFTFFISSCQQVLGAIINKLYVNGHYEGFVTGKEK 236
           + + N     W+     L   +  +PF F + +   VL  ++ +    G  EGF+ G+++
Sbjct: 125 AILVNGNAKGWVKASRGLRQGDPLSPFLFTLVA--DVLSRLMIRAEEAGITEGFLVGRDR 184

Query: 237 IHIPILQYTDDTLLFCKYDEDLLLKLKEAIRLFEWSSGQKINRNKSALRGVNVDDEDLSQ 296
             + +LQ+ DDT+ F K   DLL  LK  + +F   SG KIN  KS + G+N   E LS 
Sbjct: 185 TRVSLLQFADDTIFFSKASLDLLQNLKIILLVFGQVSGLKINLEKSTISGINTRQEMLSS 244

Query: 297 MARKLGCKAGKLPFLYLGLPLGGYPRQKLFWQPVIDRVHKELDRLKRFNISRGGRQTVCK 356
           +A  L C+  + P  YLGLPLGG P+   FW PV++R+ + LD  K+  +S GGR T+ +
Sbjct: 245 LALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKTYLSLGGRITLIQ 304

Query: 357 SVLANLPTYYSSLFAIPDNLDGGLGLGGIKIQNTALLAKWGWRFLVEEPFDWHTVGKSSN 416
           S L+++P+Y+ SLF IP ++         KI+             ++  F W  VG+   
Sbjct: 305 SCLSHIPSYFLSLFKIPVSI-------ASKIEK------------MQRDFLWSGVGEGKR 364

Query: 417 SLKSHWVSISRAWRKVEALALLSLVMEEKLLFGK 445
                W  +SR  R++  L      M    L GK
Sbjct: 365 DHLIRWEVVSRP-REMGGLGFGKTSMRNSALLGK 374

The following BLAST results are available for this feature:

BLAST of CSPI03G21360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YTX2_XENLA	1.3e-09	25.16	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1	[more]
LORF2_MOUSE	1.7e-09	27.85	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2	[more]
LIN1_NYCCO	4.0e-06	25.55	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1	[more]

BLAST of CSPI03G21360 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C9Z3_VITVI	1.9e-58	34.62	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009132 PE=4 SV=1	[more]
A5BZG3_VITVI	9.2e-58	34.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042643 PE=4 SV=1	[more]
A5AFR7_VITVI	2.7e-57	34.52	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1	[more]
M5WKV4_PRUPE	3.5e-57	39.75	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 S...	[more]
M5XUF8_PRUPE	3.5e-57	36.20	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015473mg PE=4 S...	[more]

BLAST of CSPI03G21360 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20520.1	1.6e-08	41.67	RNA binding;RNA-directed DNA polymerases	[more]

BLAST of CSPI03G21360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|658030603\|ref\|XP_008350747.1\|	1.2e-58	42.46	PREDICTED: uncharacterized protein LOC103414113 [Malus domestica]	[more]
gi\|147800123\|emb\|CAN68820.1\|	2.7e-58	34.62	hypothetical protein VITISV_009132 [Vitis vinifera]	[more]
gi\|657990185\|ref\|XP_008387315.1\|	4.5e-58	41.98	PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]	[more]
gi\|658048925\|ref\|XP_008360144.1\|	5.9e-58	41.85	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|147802490\|emb\|CAN75156.1\|	1.3e-57	34.77	hypothetical protein VITISV_042643 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21360.1	CSPI03G21360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 57..152 score: 3.2
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 233..344 score: 1.0E-45coord: 42..181 score: 1.0
None	No IPR available	PANTHER	PTHR19446:SF373	SUBFAMILY NOT NAMED	coord: 233..344 score: 1.0E-45coord: 42..181 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21360	Watermelon (97103) v2	cpiwmbB224
CSPI03G21360	Wax gourd	cpiwgoB271
CSPI03G21360	Cucumber (Gy14) v1	cgycpiB554
CSPI03G21360	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21360	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21360	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21360	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21360	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21360	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21360	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21360	Watermelon (97103) v1	cpiwmB245
CSPI03G21360	Cucurbita pepo (Zucchini)	cpecpiB552
CSPI03G21360	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G21360	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21360	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21360	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21360	Silver-seed gourd	carcpiB0545
CSPI03G21360	Silver-seed gourd	carcpiB0798
CSPI03G21360	Cucumber (Chinese Long) v3	cpicucB144