CSPI03G21260 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21260
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	60S ribosomal protein L34
Location	Chr3 : 17454368 .. 17454732 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAACTATGCTACCAAGTCTAACCAGCACTGTGTCGTTAAAACCCCTGGTGTGAAGCACGTGTATCTGACTGCCAAGAAAAGTGCTAGCAGACCTAATGTTTGGTTATCGGCAAAAGGATTCAAGGGATTTCTCACTTGAGGCCAGCTAAATATAAGAGGACTAGACTAGCTAGGAATTGGAGGATTGTGAATCGTGCGTATGATGGCGTTTTATCTAGTAGTGCAGTGAGGGAGAGGATTATTCGAGCCTTTTTGGTTGAAGGGCAGAAGATTGTGAAGCGTATTGAAGATTCAGAAGGCGAAGGAAAAGCTGGCATCAAAGAACTAAATTAA

mRNA sequence

ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAACTATGCTACCAAGTCTAACCAGCACTGTGTCGTTAAAACCCCTGTGAGGGAGAGGATTATTCGAGCCTTTTTGGTTGAAGGGCAGAAGATTGTGAAGCGTATTGAAGATTCAGAAGGCGAAGGAAAAGCTGGCATCAAAGAACTAAATTAA

Coding sequence (CDS)

ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAACTATGCTACCAAGTCTAACCAGCACTGTGTCGTTAAAACCCCTGTGAGGGAGAGGATTATTCGAGCCTTTTTGGTTGAAGGGCAGAAGATTGTGAAGCGTATTGAAGATTCAGAAGGCGAAGGAAAAGCTGGCATCAAAGAACTAAATTAA

Homology

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BLAST of CSPI03G21260 vs. Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP 27
          MVQRLTYRKRH+YATKSNQH VVKTP
Sbjct: 1  MVQRLTYRKRHSYATKSNQHRVVKTP 26

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BLAST of CSPI03G21260 vs. Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.1e-06
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP 27
          MVQRLTYR+RH+YATKSNQH VVKTP
Sbjct: 1  MVQRLTYRRRHSYATKSNQHRVVKTP 26

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BLAST of CSPI03G21260 vs. TrEMBL
Match: A0A0D9X883_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-12
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTPVRERIIRAFLVEGQKIVKRI 47
          MVQRLTYRKRH+YATKSNQ  VVKTPVRERIIRAFLVE QKIVK++
Sbjct: 1  MVQRLTYRKRHSYATKSNQTRVVKTPVRERIIRAFLVEEQKIVKKV 46

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BLAST of CSPI03G21260 vs. TrEMBL
Match: B9I409_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11010g PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-06
Identity = 41/96 (42.71%), Postives = 44/96 (45.83%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP---------------------------------- 47
          MVQRLTYRKRH+YATKSNQH VVKTP                                  
Sbjct: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGRSRLSRN 60

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BLAST of CSPI03G21260 vs. TrEMBL
Match: A0A0A0L9Z1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G305650 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-06
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP 27
          MVQRLTYRKRHNYATKSNQHCVVKTP
Sbjct: 22 MVQRLTYRKRHNYATKSNQHCVVKTP 47

[Close]

BLAST of CSPI03G21260 vs. TAIR10
Match: AT1G26880.1 (AT1G26880.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 2.9e-06
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP 27
          MVQRL YR RH+YATKSNQH +VKTP
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTP 26

[Close]

BLAST of CSPI03G21260 vs. TAIR10
Match: AT1G69620.1 (AT1G69620.1 ribosomal protein L34)

HSP 1 Score: 47.8 bits (112), Expect = 2.9e-06
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP 27
          MVQRL YR RH+YATKSNQH +VKTP
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTP 26

[Close]

BLAST of CSPI03G21260 vs. TAIR10
Match: AT3G28900.1 (AT3G28900.1 Ribosomal protein L34e superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 2.9e-06
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP 27
          MVQRL YR RH+YATKSNQH +VKTP
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTP 26

[Close]

BLAST of CSPI03G21260 vs. NCBI nr
Match: gi|224122210|ref|XP_002318778.1| (hypothetical protein POPTR_0012s11010g [Populus trichocarpa])

HSP 1 Score: 58.9 bits (141), Expect = 3.6e-06
Identity = 41/96 (42.71%), Postives = 44/96 (45.83%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP---------------------------------- 47
          MVQRLTYRKRH+YATKSNQH VVKTP                                  
Sbjct: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGRSRLSRN 60

[Close]

BLAST of CSPI03G21260 vs. NCBI nr
Match: gi|700202661|gb|KGN57794.1| (hypothetical protein Csa_3G305650 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-06
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1


Query: 1  MVQRLTYRKRHNYATKSNQHCVVKTP 27
          MVQRLTYRKRHNYATKSNQHCVVKTP
Sbjct: 22 MVQRLTYRKRHNYATKSNQHCVVKTP 47

The following BLAST results are available for this feature:

BLAST of CSPI03G21260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL34_TOBAC	2.7e-06	92.31	60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1	[more]
RL34_PEA	6.1e-06	88.46	60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1	[more]

BLAST of CSPI03G21260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D9X883_9ORYZ	3.0e-12	86.96	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]
B9I409_POPTR	2.5e-06	42.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11010g PE=4 SV=1	[more]
A0A0A0L9Z1_CUCSA	3.3e-06	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G305650 PE=4 SV=1	[more]

BLAST of CSPI03G21260 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26880.1	2.9e-06	80.77	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	2.9e-06	80.77	ribosomal protein L34	[more]
AT3G28900.1	2.9e-06	80.77	Ribosomal protein L34e superfamily protein	[more]

BLAST of CSPI03G21260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|224122210\|ref\|XP_002318778.1\|	3.6e-06	42.71	hypothetical protein POPTR_0012s11010g [Populus trichocarpa]	[more]
gi\|700202661\|gb\|KGN57794.1\|	4.7e-06	100.00	hypothetical protein Csa_3G305650 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008195	Ribosomal_L34Ae

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21260.1	CSPI03G21260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..26 score: 3.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21260	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21260	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21260	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21260	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21260	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21260	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21260	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21260	Watermelon (97103) v1	cpiwmB245
CSPI03G21260	Cucurbita pepo (Zucchini)	cpecpiB552
CSPI03G21260	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G21260	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21260	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21260	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21260	Silver-seed gourd	carcpiB0545
CSPI03G21260	Silver-seed gourd	carcpiB0798
CSPI03G21260	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21260	Watermelon (97103) v2	cpiwmbB224
CSPI03G21260	Wax gourd	cpiwgoB271
CSPI03G21260	Cucumber (Gy14) v1	cgycpiB554