CSPI03G20910 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGCCAGCTGGTGTGTCGGACACGTGTCAGAGGTGTCGGGGGTGTCAGTGTTGGACACGCTTGGCCATTTTAGGAGTGTTTGTGCTTCTTAGGTCTTAGTCACATTATTTAGGTTCTAGCTAAAGAGCTCTGTTATTGTTATCTTGTTTTTCCTTTCTCTAAGCCTGTAGAAGGGATTATGCATTGGGGCTAACATTTCAATTATGTTTTATCAGTAGTGATTACTTGACAGTAGCAACAACTCGTCCTGAAACCTTATTTGGTGATGTAGCTATAGCAGTGCATCCTCAGGTAAGCTGGCATTCAACTATTTACAGTTTAACTTGGGTTGGTGATGGTGGATGGATACTTATAACTAGTTCCATCTCTCTGGGTTTTTAAGGACACTATGGATGATGAAATTGATAGTCAAGGTGCACACAAGATGACTTATACTTAAAACAATGAAAAGAAAAAGGTCTTAGAGAGATATAACTAGTTCTAGCTCTTTAAGTATGCAATGAAAATGATCTAAAGGTCTGAATATTTTTTGTTTGGTGAGTCAATATCCTGATAGGAAACATGGACATATTTGAAGCTTAGCATAGGACTTAAAAAGAATAGTAGTGTCTTGCTTAAATATCATGGATATGTCCACCCTCACTGATGTTTCTTGCTAATTAATAGGAAACTGATTCTTGATCCTTATAGTGGGATGACTTTATTTGCAGGATGATCGTTATTCTAAATATGTTGGCATGATGGCAATTGTTCCAATGACGTATGGTCGTCATGTCCCTATCATCTCTGATAAGGTAACCATATTCTCAATTACCTTATCTATTTGAGGTAATTATCATGATTCAACTTGGTAGAGATGAA ATGGAAATGCCAGCTGGTGTGTCGGACACGTGTCAGAGGTGTCGGGGGTGTCAGTGTTGGACACGCTTGGCCATTTTAGGAGTGTTTGTGCTTCTTAGTAGTGATTACTTGACAGTAGCAACAACTCGTCCTGAAACCTTATTTGGTGATGTAGCTATAGCAGTGCATCCTCAGGATGATCGTTATTCTAAATATGTTGGCATGATGGCAATTGTTCCAATGACGTATGGTCGTCATGTCCCTATCATCTCTGATAAGGTAACCATATTCTCAATTACCTTATCTATTTGA ATGGAAATGCCAGCTGGTGTGTCGGACACGTGTCAGAGGTGTCGGGGGTGTCAGTGTTGGACACGCTTGGCCATTTTAGGAGTGTTTGTGCTTCTTAGTAGTGATTACTTGACAGTAGCAACAACTCGTCCTGAAACCTTATTTGGTGATGTAGCTATAGCAGTGCATCCTCAGGATGATCGTTATTCTAAATATGTTGGCATGATGGCAATTGTTCCAATGACGTATGGTCGTCATGTCCCTATCATCTCTGATAAGGTAACCATATTCTCAATTACCTTATCTATTTGA
BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYVM2_ARATH (Valine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EMB2247 PE=3 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21 Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1
BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYV_PSEAE (Valine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=valS PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 2.8e-13 Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1
BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYV_FERNB (Valine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=valS PE=3 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 8.1e-13 Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1
BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYV_BUCBP (Valine--tRNA ligase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=valS PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.8e-12 Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1
BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYV_BLOFL (Valine--tRNA ligase OS=Blochmannia floridanus GN=valS PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 3.1e-12 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1
BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A061EFZ2_THECC (ATP binding,valine-tRNA ligase isoform 3 OS=Theobroma cacao GN=TCM_019154 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20 Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1
BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A061EGZ7_THECC (ATP binding,valine-tRNA ligase isoform 1 OS=Theobroma cacao GN=TCM_019154 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20 Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1
BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A0D2UL78_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_011G2960002 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20 Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1
BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A0D2RDZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G2960002 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20 Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1
BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A0D2SZ28_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G2960002 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20 Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1
BLAST of CSPI03G20910 vs. TAIR10
Match: AT5G16715.1 (AT5G16715.1 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases) HSP 1 Score: 103.2 bits (256), Expect = 9.1e-23 Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1
BLAST of CSPI03G20910 vs. TAIR10
Match: AT1G14610.1 (AT1G14610.1 valyl-tRNA synthetase / valine--tRNA ligase (VALRS)) HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07 Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1
BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|778680737|ref|XP_011651387.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22 Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1
BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|778680746|ref|XP_011651390.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X4 [Cucumis sativus]) HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22 Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1
BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|659114314|ref|XP_008457007.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Cucumis melo]) HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21 Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|659114320|ref|XP_008457011.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X5 [Cucumis melo]) HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21 Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|659114322|ref|XP_008457012.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X6 [Cucumis melo]) HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21 Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |