CSPI03G20910 (gene) Wild cucumber (PI 183967)

NameCSPI03G20910
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionValine--tRNA ligase
LocationChr3 : 16966213 .. 16967079 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGCCAGCTGGTGTGTCGGACACGTGTCAGAGGTGTCGGGGGTGTCAGTGTTGGACACGCTTGGCCATTTTAGGAGTGTTTGTGCTTCTTAGGTCTTAGTCACATTATTTAGGTTCTAGCTAAAGAGCTCTGTTATTGTTATCTTGTTTTTCCTTTCTCTAAGCCTGTAGAAGGGATTATGCATTGGGGCTAACATTTCAATTATGTTTTATCAGTAGTGATTACTTGACAGTAGCAACAACTCGTCCTGAAACCTTATTTGGTGATGTAGCTATAGCAGTGCATCCTCAGGTAAGCTGGCATTCAACTATTTACAGTTTAACTTGGGTTGGTGATGGTGGATGGATACTTATAACTAGTTCCATCTCTCTGGGTTTTTAAGGACACTATGGATGATGAAATTGATAGTCAAGGTGCACACAAGATGACTTATACTTAAAACAATGAAAAGAAAAAGGTCTTAGAGAGATATAACTAGTTCTAGCTCTTTAAGTATGCAATGAAAATGATCTAAAGGTCTGAATATTTTTTGTTTGGTGAGTCAATATCCTGATAGGAAACATGGACATATTTGAAGCTTAGCATAGGACTTAAAAAGAATAGTAGTGTCTTGCTTAAATATCATGGATATGTCCACCCTCACTGATGTTTCTTGCTAATTAATAGGAAACTGATTCTTGATCCTTATAGTGGGATGACTTTATTTGCAGGATGATCGTTATTCTAAATATGTTGGCATGATGGCAATTGTTCCAATGACGTATGGTCGTCATGTCCCTATCATCTCTGATAAGGTAACCATATTCTCAATTACCTTATCTATTTGAGGTAATTATCATGATTCAACTTGGTAGAGATGAA

mRNA sequence

ATGGAAATGCCAGCTGGTGTGTCGGACACGTGTCAGAGGTGTCGGGGGTGTCAGTGTTGGACACGCTTGGCCATTTTAGGAGTGTTTGTGCTTCTTAGTAGTGATTACTTGACAGTAGCAACAACTCGTCCTGAAACCTTATTTGGTGATGTAGCTATAGCAGTGCATCCTCAGGATGATCGTTATTCTAAATATGTTGGCATGATGGCAATTGTTCCAATGACGTATGGTCGTCATGTCCCTATCATCTCTGATAAGGTAACCATATTCTCAATTACCTTATCTATTTGA

Coding sequence (CDS)

ATGGAAATGCCAGCTGGTGTGTCGGACACGTGTCAGAGGTGTCGGGGGTGTCAGTGTTGGACACGCTTGGCCATTTTAGGAGTGTTTGTGCTTCTTAGTAGTGATTACTTGACAGTAGCAACAACTCGTCCTGAAACCTTATTTGGTGATGTAGCTATAGCAGTGCATCCTCAGGATGATCGTTATTCTAAATATGTTGGCATGATGGCAATTGTTCCAATGACGTATGGTCGTCATGTCCCTATCATCTCTGATAAGGTAACCATATTCTCAATTACCTTATCTATTTGA
BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYVM2_ARATH (Valine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EMB2247 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1

Query: 33  SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           S D+LT+ATTRPETLFGDVA+AVHP+DDRYSKYVG  AIVPMTYGRHVPII+DK
Sbjct: 273 SPDFLTIATTRPETLFGDVALAVHPEDDRYSKYVGQTAIVPMTYGRHVPIIADK 326

BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYV_PSEAE (Valine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=valS PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-13
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1

Query: 35  DYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           DYL VATTRPETL GD A+AVHP+D+RY+K +G  A +P+  GRH+PII+D+
Sbjct: 212 DYLVVATTRPETLLGDAAVAVHPEDERYAKLIGQFAELPIV-GRHIPIIADE 262

BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYV_FERNB (Valine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=valS PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.1e-13
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1

Query: 35  DYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISD 86
           DY+ +ATTRPET+ GD A+AVHP D+RY KYVG +AI+P+  GR +P+I+D
Sbjct: 208 DYIIIATTRPETMLGDTAVAVHPSDERYRKYVGKIAILPLV-GREIPVIAD 257

BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYV_BUCBP (Valine--tRNA ligase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=valS PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-12
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1

Query: 36  YLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           YL +ATTRPETLFGD AIAVHP D RY KY+G  A+VP+   R +PIISD+
Sbjct: 218 YLVIATTRPETLFGDTAIAVHPNDSRYKKYIGCYALVPI-INRIIPIISDE 267

BLAST of CSPI03G20910 vs. Swiss-Prot
Match: SYV_BLOFL (Valine--tRNA ligase OS=Blochmannia floridanus GN=valS PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1

Query: 33  SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           ++DYLT+ATTRPET+ GDVAIAV+P+D RYS  +G     P+T  R +PIISDK
Sbjct: 223 NADYLTIATTRPETILGDVAIAVNPEDPRYSHLIGKYVFTPIT-NRRIPIISDK 275

BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A061EFZ2_THECC (ATP binding,valine-tRNA ligase isoform 3 OS=Theobroma cacao GN=TCM_019154 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1

Query: 34  SDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SD+LT+ATTRPETLFGDVAIAVHPQD+RYSKYVG MAIVPMTYGRHVPIISDK
Sbjct: 272 SDFLTIATTRPETLFGDVAIAVHPQDERYSKYVGQMAIVPMTYGRHVPIISDK 324

BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A061EGZ7_THECC (ATP binding,valine-tRNA ligase isoform 1 OS=Theobroma cacao GN=TCM_019154 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1

Query: 34  SDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SD+LT+ATTRPETLFGDVAIAVHPQD+RYSKYVG MAIVPMTYGRHVPIISDK
Sbjct: 272 SDFLTIATTRPETLFGDVAIAVHPQDERYSKYVGQMAIVPMTYGRHVPIISDK 324

BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A0D2UL78_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_011G2960002 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1

Query: 34  SDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SD+LT+ATTRPETLFGDVAIAVHPQD+RYSKYVG MAIVPMTYGRHVPIISDK
Sbjct: 272 SDFLTIATTRPETLFGDVAIAVHPQDERYSKYVGKMAIVPMTYGRHVPIISDK 324

BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A0D2RDZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G2960002 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1

Query: 34 SDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
          SD+LT+ATTRPETLFGDVAIAVHPQD+RYSKYVG MAIVPMTYGRHVPIISDK
Sbjct: 39 SDFLTIATTRPETLFGDVAIAVHPQDERYSKYVGKMAIVPMTYGRHVPIISDK 91

BLAST of CSPI03G20910 vs. TrEMBL
Match: A0A0D2SZ28_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G2960002 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-20
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1

Query: 34  SDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SD+LT+ATTRPETLFGDVAIAVHPQD+RYSKYVG MAIVPMTYGRHVPIISDK
Sbjct: 272 SDFLTIATTRPETLFGDVAIAVHPQDERYSKYVGKMAIVPMTYGRHVPIISDK 324

BLAST of CSPI03G20910 vs. TAIR10
Match: AT5G16715.1 (AT5G16715.1 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases)

HSP 1 Score: 103.2 bits (256), Expect = 9.1e-23
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1

Query: 33  SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           S D+LT+ATTRPETLFGDVA+AVHP+DDRYSKYVG  AIVPMTYGRHVPII+DK
Sbjct: 273 SPDFLTIATTRPETLFGDVALAVHPEDDRYSKYVGQTAIVPMTYGRHVPIIADK 326

BLAST of CSPI03G20910 vs. TAIR10
Match: AT1G14610.1 (AT1G14610.1 valyl-tRNA synthetase / valine--tRNA ligase (VALRS))

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1

Query: 39  VATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDKVTI 90
           VATTR ET+ GD AIA+HP D RY    G  A+ P   GR +PII D + +
Sbjct: 364 VATTRVETMLGDTAIAIHPDDARYKHLHGKFAVHPFN-GRKLPIICDGILV 413

BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|778680737|ref|XP_011651387.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 33  SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK
Sbjct: 269 SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 322

BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|778680746|ref|XP_011651390.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X4 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 33  SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK
Sbjct: 123 SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 176

BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|659114314|ref|XP_008457007.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1

Query: 33  SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SSDYLTVATTRPETLFGDVAIAV+PQDDRYSKYVGM AIVPMTYGRHVPIISDK
Sbjct: 269 SSDYLTVATTRPETLFGDVAIAVNPQDDRYSKYVGMTAIVPMTYGRHVPIISDK 322

BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|659114320|ref|XP_008457011.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X5 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1

Query: 33  SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SSDYLTVATTRPETLFGDVAIAV+PQDDRYSKYVGM AIVPMTYGRHVPIISDK
Sbjct: 123 SSDYLTVATTRPETLFGDVAIAVNPQDDRYSKYVGMTAIVPMTYGRHVPIISDK 176

BLAST of CSPI03G20910 vs. NCBI nr
Match: gi|659114322|ref|XP_008457012.1| (PREDICTED: valine--tRNA ligase, mitochondrial isoform X6 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1

Query: 33  SSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDK 87
           SSDYLTVATTRPETLFGDVAIAV+PQDDRYSKYVGM AIVPMTYGRHVPIISDK
Sbjct: 269 SSDYLTVATTRPETLFGDVAIAVNPQDDRYSKYVGMTAIVPMTYGRHVPIISDK 322

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SYVM2_ARATH1.6e-2185.19Valine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EM... [more]
SYV_PSEAE2.8e-1363.46Valine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / P... [more]
SYV_FERNB8.1e-1360.78Valine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / ... [more]
SYV_BUCBP1.8e-1266.67Valine--tRNA ligase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp... [more]
SYV_BLOFL3.1e-1261.11Valine--tRNA ligase OS=Blochmannia floridanus GN=valS PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A061EFZ2_THECC1.2e-2092.45ATP binding,valine-tRNA ligase isoform 3 OS=Theobroma cacao GN=TCM_019154 PE=3 S... [more]
A0A061EGZ7_THECC1.2e-2092.45ATP binding,valine-tRNA ligase isoform 1 OS=Theobroma cacao GN=TCM_019154 PE=3 S... [more]
A0A0D2UL78_GOSRA1.6e-2092.45Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_011G2960002 PE... [more]
A0A0D2RDZ4_GOSRA1.6e-2092.45Uncharacterized protein OS=Gossypium raimondii GN=B456_011G2960002 PE=4 SV=1[more]
A0A0D2SZ28_GOSRA1.6e-2092.45Uncharacterized protein OS=Gossypium raimondii GN=B456_011G2960002 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G16715.19.1e-2385.19 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide bi... [more]
AT1G14610.11.4e-0750.98 valyl-tRNA synthetase / valine--tRNA ligase (VALRS)[more]
Match NameE-valueIdentityDescription
gi|778680737|ref|XP_011651387.1|1.1e-22100.00PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Cucumis sativus][more]
gi|778680746|ref|XP_011651390.1|1.1e-22100.00PREDICTED: valine--tRNA ligase, mitochondrial isoform X4 [Cucumis sativus][more]
gi|659114314|ref|XP_008457007.1|3.6e-2196.30PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Cucumis melo][more]
gi|659114320|ref|XP_008457011.1|3.6e-2196.30PREDICTED: valine--tRNA ligase, mitochondrial isoform X5 [Cucumis melo][more]
gi|659114322|ref|XP_008457012.1|3.6e-2196.30PREDICTED: valine--tRNA ligase, mitochondrial isoform X6 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002300aa-tRNA-synth_Ia
IPR009008Val/Leu/Ile-tRNA-synth_edit
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0002161aminoacyl-tRNA editing activity
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006450 regulation of translational fidelity
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0006438 valyl-tRNA aminoacylation
biological_process GO:0006418 tRNA aminoacylation for protein translation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0002161 aminoacyl-tRNA editing activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004832 valine-tRNA ligase activity
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0000166 nucleotide binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20910.1CSPI03G20910.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002300Aminoacyl-tRNA synthetase, class IaPFAMPF00133tRNA-synt_1coord: 36..60
score: 1.
IPR009008Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domainGENE3DG3DSA:3.90.740.10coord: 29..86
score: 2.4
IPR009008Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domainunknownSSF50677ValRS/IleRS/LeuRS editing domaincoord: 29..87
score: 1.83
NoneNo IPR availablePANTHERPTHR11946ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASEScoord: 33..86
score: 3.3
NoneNo IPR availablePANTHERPTHR11946:SF76ATP BINDING/VALINE-TRNA LIGASE/AMINOACYL-TRNA LIGASEcoord: 33..86
score: 3.3