CSPI03G20720 (gene) Wild cucumber (PI 183967)

NameCSPI03G20720
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr3 : 16745740 .. 16746695 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACATCACTAGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAAAGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACATGATGAGTTTTGGCAAAAGTAAAGATGACCAAAAGCAAAATGTTTCCGCTGGAAGTTTTAAATGTGGAAAATTTTGCTCTTACTGCAACTGCAACTAATACAACAAAGAACAACTCGAAGTTATGACATTTAAGGTATGTACATCTTAATATTAAAGGGCTTTCTTTGCTAAATCAAAGAGATATGGTTATTCGGTTATCGAAAATCAGTGCTATCAATATCTGTGAGGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTACCTATTGGGAAAGCTTGGAGAGCCTCGAAGTATCTCGAGCTAATTCATGTTGATTTGTGCGAGCCAATGCAAACAAAGTCTCTTGGTGGGAGATTTTATTTCTTGATTTTTATAGACGATTATAGTCGTGTATGAGTTGGATATATTTTCTAGAAAGAAAATCAGAAACATCTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCAGAGCAAAATGGGAAAGCTGAGAGGAAGAATTGA

mRNA sequence

ATGGCAAACATCACTAGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAAAGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGAGATATGGTTATTCGGTTATCGAAAATCAGTGCTATCAATATCTGTGAGGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTACCTATTGGGAAAGCTTGGAGAGCCTCGAAAAAGAAAATCAGAAACATCTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCAGAGCAAAATGGGAAAGCTGAGAGGAAGAATTGA

Coding sequence (CDS)

ATGGCAAACATCACTAGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAAAGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGAGATATGGTTATTCGGTTATCGAAAATCAGTGCTATCAATATCTGTGAGGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTACCTATTGGGAAAGCTTGGAGAGCCTCGAAAAAGAAAATCAGAAACATCTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCAGAGCAAAATGGGAAAGCTGAGAGGAAGAATTGA
BLAST of CSPI03G20720 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-11
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1

Query: 109 SVLSISVRDVCMENKLE----NLYLLGKLGEPRKR--------KSETSEKFKHFKAKVEK 168
           ++L +   DVC   ++E    N Y +  + +  ++        K +  + F+ F A VE+
Sbjct: 479 NILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVER 538

Query: 169 QSGMFIKSLRSDRGGEFLSNNFNHFCEEHGIHRELTTPYTPEQNGKAERKN 208
           ++G  +K LRSD GGE+ S  F  +C  HGI  E T P TP+ NG AER N
Sbjct: 539 ETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMN 589

BLAST of CSPI03G20720 vs. TrEMBL
Match: A5BFD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033829 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 83/218 (38.07%), Postives = 121/218 (55.50%), Query Frame = 1

Query: 2   ANITSDQKTAEVCFIDSGCSNHMTGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGIE 61
           A   ++  T+E   +DSGC+NHMT  + +F E+      KV +GN + + V+ KG V IE
Sbjct: 308 ATCFANGSTSESWLVDSGCTNHMTYDQDLFREIDRTTISKVRIGNGEYIPVKGKGIVAIE 367

Query: 62  THHGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDEIWLFGYRKSVLSISVRDVCME 121
           +  G +++ ++ +VPDI  NLLSVGQL+E G  + F+D        K+ +     DV   
Sbjct: 368 SLTGLKLIYDILFVPDIDQNLLSVGQLVEKGFKVCFED--------KNCIIKDAEDVSGP 427

Query: 122 NKLENL----YLLGKLGEPRK--------RKSETSEKFKHFKAKVEKQSGMFIKSLRSDR 181
            K  +L    Y +  + +  +         KSE ++ F  +KA VE QS   IK +RS+ 
Sbjct: 428 QKTPSLKGSKYYIAFIDDFTRFCWIYFLTCKSEVADVFLRYKAMVENQSEYRIKVIRSNN 487

Query: 182 GGEFLSNNFNHFCEEHGIHRELTTPYTPEQNGKAERKN 208
           G E+ S  FN FCE+ GI  +LT PYTP+QNG  ERKN
Sbjct: 488 GTEYTSEKFNKFCEDAGIDHQLTAPYTPQQNGVVERKN 517

BLAST of CSPI03G20720 vs. TrEMBL
Match: A5C4B5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028208 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.0e-29
Identity = 80/192 (41.67%), Postives = 111/192 (57.81%), Query Frame = 1

Query: 16  IDSGCSNHMTGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYV 75
           IDSGC+N MT  + +F EL +    KV +GN   L V+ KGT  IE H G ++++NV YV
Sbjct: 165 IDSGCTNRMTYDQGLFKELDKTVTSKVRIGNGAYLAVKGKGTXEIEGHTGLKLISNVLYV 224

Query: 76  PDIGYNLLSVGQLMESGHSILFDDEIWLFGYRKSVLSISVRDVCMENKLENLYLLGKLGE 135
           P+I  NLLSVGQL+E G+++LF+D   +                ++ +   +Y +     
Sbjct: 225 PEINQNLLSVGQLLEKGYNVLFEDNHCMI---------------VDAQGREIYFM----- 284

Query: 136 PRKRKSETSEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNFNHFCEEHGIHRELTTPY 195
             K KSE ++ F  FKA  E QS   ++ +RSD G E+ S  FN F E+ GI  +LTTPY
Sbjct: 285 --KFKSEVADIFWKFKAWAENQSKCKMQVIRSDNGTEYTSEKFNKFSEDAGIEHQLTTPY 334

Query: 196 TPEQNGKAERKN 208
           TP+ NG  ERKN
Sbjct: 345 TPQHNGVXERKN 334

BLAST of CSPI03G20720 vs. TrEMBL
Match: A5BMR0_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_041860 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 82/222 (36.94%), Postives = 117/222 (52.70%), Query Frame = 1

Query: 16  IDSGCSNHMTGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYV 75
           IDSGC++HMT    IF  +    + KV+LGN + +Q + KGT+ I T  G +++TNV Y+
Sbjct: 480 IDSGCTSHMTKYLSIFTSIDRSVQPKVKLGNGEVVQAKGKGTIAISTKRGTKMVTNVLYI 539

Query: 76  PDIGYNLLSVGQLMESGHSILFDDEIWLFG-----------------YRK------SVLS 135
           PD+  NLLSV Q++ +G+++ F +                       Y K       V S
Sbjct: 540 PDLDQNLLSVAQMLRNGYAVSFKENFCFITDVHRTEIAKIKMNGNSFYLKLDLVEGHVFS 599

Query: 136 ISVRDVCMENKLENLYLLGKLGEPR-------KRKSETSEKFKHFKAKVEKQSGMFIKSL 195
             + +  + +K    + L  L   R       K KS+    FK FK  VE QSG   K L
Sbjct: 600 AKIDESVVWHKRYGHFNLKSLRFIRMTWVYFLKTKSQVXSVFKSFKKMVETQSGQNXKVL 659

Query: 196 RSDRGGEFLSNNFNHFCEEHGIHRELTTPYTPEQNGKAERKN 208
            +D GGE++S  FN FC+E GI  +LT PY+P+QNG +ERKN
Sbjct: 660 XTDNGGEYISKEFNVFCQEAGIVHQLTAPYSPQQNGVSERKN 701

BLAST of CSPI03G20720 vs. TrEMBL
Match: A5BD08_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010671 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-28
Identity = 78/197 (39.59%), Postives = 113/197 (57.36%), Query Frame = 1

Query: 16  IDSGCSNHMTGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYV 75
           + SGC+NHMT  + IF EL +    KV +GN + +    KGTV IE+  G +++ +V +V
Sbjct: 245 LGSGCTNHMTYDQGIFRELDKTTVSKVRIGNGEYISTRGKGTVAIESLSGLKLIPDVLFV 304

Query: 76  PDIGYNLLSVGQLMESGHSILFDDEIWLF-----GYRKSVLSISVRDVCMENKLENLYLL 135
           P+I  NLLSVGQ++E G  +LF+D+ ++       YR   L  S   +   +     Y +
Sbjct: 305 PNIDQNLLSVGQVLEKGFKVLFEDKFYMIKDANRKYRTPSLKGSKYYIAFIDDYTRYYWI 364

Query: 136 GKLGEPRKRKSETSEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNFNHFCEEHGIHRE 195
             L      K E ++ F  +KA VE QSG  +  +R+D G E+ S  FN+FCEE  I  +
Sbjct: 365 FFL----NFKFEVADVFWKYKALVENQSGAVMHVIRTDNGTEYTSEIFNNFCEEVSIEHQ 424

Query: 196 LTTPYTPEQNGKAERKN 208
           LT PYTP+QNG  E+KN
Sbjct: 425 LTVPYTPQQNGVVEKKN 437

BLAST of CSPI03G20720 vs. TrEMBL
Match: A0A061EWN5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024078 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27
Identity = 78/192 (40.62%), Postives = 104/192 (54.17%), Query Frame = 1

Query: 16  IDSGCSNHMTGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYV 75
           +DS CSNHMT    +F+EL       V++GN   L    KGTV I+T  G R + NV  V
Sbjct: 311 LDSTCSNHMTSKAELFSELDTDHCSSVKIGNGFILNAVGKGTVAIQTTSGTRYVLNVLLV 370

Query: 76  PDIGYNLLSVGQLMESGHSILFDDEIWLFGYRKSVLSISVRDVCMENKLENLYLLGKLGE 135
           P+I  NLLSVGQL++  + ++F +         +V  +SV                    
Sbjct: 371 PEITQNLLSVGQLVDEDYMLVFKNNACTVYDPSAVYMMSVP------------------- 430

Query: 136 PRKRKSETSEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNFNHFCEEHGIHRELTTPY 195
               KSE    F+ FKAKVE +SG  IK LR++ GGE+ S+ F  + E+ GIH +LT PY
Sbjct: 431 --MHKSEVFSVFQKFKAKVENESGCRIKILRTNNGGEYTSSEFTSYLEKEGIHHQLTAPY 481

Query: 196 TPEQNGKAERKN 208
            PEQNG +ERKN
Sbjct: 491 CPEQNGVSERKN 481

BLAST of CSPI03G20720 vs. TAIR10
Match: AT3G20980.1 (AT3G20980.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.7e-06
Identity = 34/88 (38.64%), Postives = 42/88 (47.73%), Query Frame = 1

Query: 13  VCFIDSGCSNHMTGLKPIFNELKEGEKLKVEL--GNNKEL---QVERKGTVGIETHHGNR 72
           +  I S  SNHMT     F  L    K KV+   G+  E     VE  G V   T+ GN+
Sbjct: 268 IWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEGNK 327

Query: 73  ILTNVQYVPDIGYNLLSVGQLMESGHSI 96
            + NV YVP I  N LSV QL  +G  +
Sbjct: 328 TIKNVLYVPGIEGNALSVSQLKRNGFEV 355

BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|449456267|ref|XP_004145871.1| (PREDICTED: uncharacterized protein LOC101208246 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.6e-66
Identity = 140/181 (77.35%), Postives = 140/181 (77.35%), Query Frame = 1

Query: 27  LKPIFNELKEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG 86
           LKPIFNEL EGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG
Sbjct: 281 LKPIFNELNEGEKLKVELGNNKELQVERKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG 340

Query: 87  QLMESGHSILFDDEIWLFGYRKSVLSISVRDVCMENKLENLYLLGKLGEPRKRKSETSEK 146
           QLMESGHSILFDDE      RKS                                 TSEK
Sbjct: 341 QLMESGHSILFDDE------RKSE--------------------------------TSEK 400

Query: 147 FKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNFNHFCEEHGIHRELTTPYTPEQNGKAERK 206
           FKHFKAKVEKQSGMFIKSLRSD GGEFLSNNFNHFCEEHGIHRELTTPYTPEQNGKAERK
Sbjct: 401 FKHFKAKVEKQSGMFIKSLRSDGGGEFLSNNFNHFCEEHGIHRELTTPYTPEQNGKAERK 423

Query: 207 N 208
           N
Sbjct: 461 N 423

BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|720070303|ref|XP_010277694.1| (PREDICTED: uncharacterized protein LOC104612075 [Nelumbo nucifera])

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-43
Identity = 113/244 (46.31%), Postives = 144/244 (59.02%), Query Frame = 1

Query: 7   DQKTAEVCFIDSGCSNHMTGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGIETHHGN 66
           D  +  V F+DSGCS+HM+G K +F EL + +K +V LG+NK++QVE K T+ I+T  GN
Sbjct: 304 DNASNGVWFLDSGCSSHMSGTKSLFKELDKSQKSEVRLGDNKQMQVEGKCTIAIKTSQGN 363

Query: 67  -RILTNVQYVPDIGYNLLSVGQLMESGHSILFDDEIWLFGYRKS---------------- 126
            ++L +VQY+P++ +NLLSVGQL++ G+SILFDD       +K+                
Sbjct: 364 VKLLHDVQYIPNLAHNLLSVGQLIDGGYSILFDDGCCSVQDKKTGHIIVSIPMAQNKMFR 423

Query: 127 ------------VLSISVRDVCMENKLENLYLLGKLGEPR--------------KRKSET 186
                         +I  + V M NK+E  +LL K  E                K KSET
Sbjct: 424 LKVSEVRNYTLIARAIDAKAVSMGNKVEIHFLL-KSHEGLLIVLNCRMSWVYFLKFKSET 483

Query: 187 SEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNFNHFCEEHGIHRELTTPYTPEQNGKA 208
            E FK FKA VEKQSG  IK L SDRGGEF SN FN FCEE+GIHRELT PY+PEQNG  
Sbjct: 484 FETFKKFKALVEKQSGHCIKVLCSDRGGEFTSNEFNVFCEENGIHRELTAPYSPEQNGVV 543

BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|659102879|ref|XP_008452364.1| (PREDICTED: uncharacterized protein LOC103493425 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41
Identity = 89/99 (89.90%), Postives = 90/99 (90.91%), Query Frame = 1

Query: 1   MANITSDQKTAEVCFIDSGCSNHMTGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGI 60
           M NI SDQKTAEV FIDSGCSNHMTGLKP+F EL EGEKLKVEL N KELQVE KGTVGI
Sbjct: 135 MTNILSDQKTAEVWFIDSGCSNHMTGLKPVFKELTEGEKLKVELENGKELQVEGKGTVGI 194

Query: 61  ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDD 100
           ETHHGNRILTNVQYVPDIGYNLLSVGQLMESG SILFDD
Sbjct: 195 ETHHGNRILTNVQYVPDIGYNLLSVGQLMESGFSILFDD 233

BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|723656427|ref|XP_010317670.1| (PREDICTED: uncharacterized protein LOC104646163 [Solanum lycopersicum])

HSP 1 Score: 163.3 bits (412), Expect = 4.5e-37
Identity = 101/211 (47.87%), Postives = 128/211 (60.66%), Query Frame = 1

Query: 25  TGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGIETHHGN-RILTNVQYVPDIGYNLL 84
           TG K +F EL E +K KV+LGN KE+QVE KGTVGI T H   ++  NVQ+VPD+GYNLL
Sbjct: 153 TGTKSLFPELDEKQKEKVQLGNTKEMQVEGKGTVGINTSHDKVKMFDNVQFVPDLGYNLL 212

Query: 85  SVGQLMESGHSILFDDEIWLFGYRKS------------------------VLSISVRDVC 144
           SVG LM   HS+ FDD+  +   +K                          L+ S +D  
Sbjct: 213 SVGPLMSDEHSLWFDDDACVITNKKLGKKVRITMTPKKLFPLDVSNMECFALTASAKD-- 272

Query: 145 MENKLENL------YLLGKLGEPRKRKSETSEKFKHFKAKVEKQSGMFIKSLRSDRGGEF 204
            E+KL +L      Y+L       + KSET +KFK+FKA+VEKQ G+ IK+  +DRGG F
Sbjct: 273 -ESKLWHLSRMSWVYIL-------ETKSETFQKFKYFKAQVEKQIGLCIKTFHTDRGGGF 332

BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|571571183|ref|XP_006606789.1| (PREDICTED: uncharacterized protein LOC102659515 [Glycine max])

HSP 1 Score: 159.5 bits (402), Expect = 6.5e-36
Identity = 90/206 (43.69%), Postives = 123/206 (59.71%), Query Frame = 1

Query: 3   NITSDQKTAEVCFIDSGCSNHMTGLKPIFNELKEGEKLKVELGNNKELQVERKGTVGIET 62
           +I+++     V ++DSGCSNHM+  K IF  L E  K KV LG+ K+L+VE +GT+ I T
Sbjct: 232 HISNNDAEGGVWYVDSGCSNHMSNAKSIFRTLDETAKTKVRLGDGKQLEVEGRGTIAITT 291

Query: 63  HHG-NRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDEIWLFGYRKSVLSISVRDVCME 122
             G  ++L +VQYVP + +NLLSVGQL+ SG+S+LF++   L   R S  +I V+    +
Sbjct: 292 EQGITKLLCDVQYVPRLAHNLLSVGQLLNSGYSVLFENGACLIQDRSSKETI-VKIAMGK 351

Query: 123 NKLENLYLLGKLGEPRKRKSETSEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNFNHF 182
           NK+                         F       SG+++++LR DRGGEFLSN F  F
Sbjct: 352 NKM-------------------------FPLDFSSHSGLYVRALRIDRGGEFLSNEFITF 411

Query: 183 CEEHGIHRELTTPYTPEQNGKAERKN 208
           CEE GI REL  PYTP++NG AERKN
Sbjct: 412 CEEQGIRRELIAPYTPKKNGVAERKN 411

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
POLX_TOBAC4.3e-1135.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A5BFD6_VITVI1.8e-2938.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033829 PE=4 SV=1[more]
A5C4B5_VITVI7.0e-2941.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028208 PE=4 SV=1[more]
A5BMR0_VITVI1.2e-2836.94Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_041860 P... [more]
A5BD08_VITVI2.0e-2839.59Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010671 PE=4 SV=1[more]
A0A061EWN5_THECC2.3e-2740.63Uncharacterized protein OS=Theobroma cacao GN=TCM_024078 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G20980.15.7e-0638.64 Gag-Pol-related retrotransposon family protein[more]
Match NameE-valueIdentityDescription
gi|449456267|ref|XP_004145871.1|1.6e-6677.35PREDICTED: uncharacterized protein LOC101208246 [Cucumis sativus][more]
gi|720070303|ref|XP_010277694.1|9.4e-4346.31PREDICTED: uncharacterized protein LOC104612075 [Nelumbo nucifera][more]
gi|659102879|ref|XP_008452364.1|1.0e-4189.90PREDICTED: uncharacterized protein LOC103493425 [Cucumis melo][more]
gi|723656427|ref|XP_010317670.1|4.5e-3747.87PREDICTED: uncharacterized protein LOC104646163 [Solanum lycopersicum][more]
gi|571571183|ref|XP_006606789.1|6.5e-3643.69PREDICTED: uncharacterized protein LOC102659515 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0097159 organic cyclic compound binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20720.1CSPI03G20720.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 134..207
score: 5.7
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 163..207
score: 12
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 138..207
score: 4.5
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 139..207
score: 9.61
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 15..203
score: 7.4
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 15..203
score: 7.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G20720CsaV3_3G020670Cucumber (Chinese Long) v3cpicucB144
CSPI03G20720Cucsa.031340Cucumber (Gy14) v1cgycpiB003
The following gene(s) are paralogous to this gene:

None