CSPI03G20720 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAACATCACTAGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAAAGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGGTGCGTGCTTGATAAAAAATAAGCAAACATGATGAGTTTTGGCAAAAGTAAAGATGACCAAAAGCAAAATGTTTCCGCTGGAAGTTTTAAATGTGGAAAATTTTGCTCTTACTGCAACTGCAACTAATACAACAAAGAACAACTCGAAGTTATGACATTTAAGGTATGTACATCTTAATATTAAAGGGCTTTCTTTGCTAAATCAAAGAGATATGGTTATTCGGTTATCGAAAATCAGTGCTATCAATATCTGTGAGGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTACCTATTGGGAAAGCTTGGAGAGCCTCGAAGTATCTCGAGCTAATTCATGTTGATTTGTGCGAGCCAATGCAAACAAAGTCTCTTGGTGGGAGATTTTATTTCTTGATTTTTATAGACGATTATAGTCGTGTATGAGTTGGATATATTTTCTAGAAAGAAAATCAGAAACATCTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCAGAGCAAAATGGGAAAGCTGAGAGGAAGAATTGA ATGGCAAACATCACTAGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAAAGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGAGATATGGTTATTCGGTTATCGAAAATCAGTGCTATCAATATCTGTGAGGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTACCTATTGGGAAAGCTTGGAGAGCCTCGAAAAAGAAAATCAGAAACATCTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCAGAGCAAAATGGGAAAGCTGAGAGGAAGAATTGA ATGGCAAACATCACTAGTGATCAAAAGACAGCGGAGGTGTGTTTCATTGATAGCGGGTGTTCGAATCACATGACAGGCTTGAAGCCTATATTCAATGAGCTTAAAGAAGGAGAAAAGTTGAAGGTGGAACTTGGAAACAACAAGGAGCTACAAGTAGAACGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAGCTAATGGAGAGTGGGCATTCTATCTTGTTTGATGATGAGATATGGTTATTCGGTTATCGAAAATCAGTGCTATCAATATCTGTGAGGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTACCTATTGGGAAAGCTTGGAGAGCCTCGAAAAAGAAAATCAGAAACATCTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAGAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCAGAGCAAAATGGGAAAGCTGAGAGGAAGAATTGA
BLAST of CSPI03G20720 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.3e-11 Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
BLAST of CSPI03G20720 vs. TrEMBL
Match: A5BFD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033829 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29 Identity = 83/218 (38.07%), Postives = 121/218 (55.50%), Query Frame = 1
BLAST of CSPI03G20720 vs. TrEMBL
Match: A5C4B5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028208 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 7.0e-29 Identity = 80/192 (41.67%), Postives = 111/192 (57.81%), Query Frame = 1
BLAST of CSPI03G20720 vs. TrEMBL
Match: A5BMR0_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_041860 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28 Identity = 82/222 (36.94%), Postives = 117/222 (52.70%), Query Frame = 1
BLAST of CSPI03G20720 vs. TrEMBL
Match: A5BD08_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010671 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 2.0e-28 Identity = 78/197 (39.59%), Postives = 113/197 (57.36%), Query Frame = 1
BLAST of CSPI03G20720 vs. TrEMBL
Match: A0A061EWN5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024078 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27 Identity = 78/192 (40.62%), Postives = 104/192 (54.17%), Query Frame = 1
BLAST of CSPI03G20720 vs. TAIR10
Match: AT3G20980.1 (AT3G20980.1 Gag-Pol-related retrotransposon family protein) HSP 1 Score: 48.5 bits (114), Expect = 5.7e-06 Identity = 34/88 (38.64%), Postives = 42/88 (47.73%), Query Frame = 1
BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|449456267|ref|XP_004145871.1| (PREDICTED: uncharacterized protein LOC101208246 [Cucumis sativus]) HSP 1 Score: 261.2 bits (666), Expect = 1.6e-66 Identity = 140/181 (77.35%), Postives = 140/181 (77.35%), Query Frame = 1
BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|720070303|ref|XP_010277694.1| (PREDICTED: uncharacterized protein LOC104612075 [Nelumbo nucifera]) HSP 1 Score: 182.2 bits (461), Expect = 9.4e-43 Identity = 113/244 (46.31%), Postives = 144/244 (59.02%), Query Frame = 1
BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|659102879|ref|XP_008452364.1| (PREDICTED: uncharacterized protein LOC103493425 [Cucumis melo]) HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41 Identity = 89/99 (89.90%), Postives = 90/99 (90.91%), Query Frame = 1
BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|723656427|ref|XP_010317670.1| (PREDICTED: uncharacterized protein LOC104646163 [Solanum lycopersicum]) HSP 1 Score: 163.3 bits (412), Expect = 4.5e-37 Identity = 101/211 (47.87%), Postives = 128/211 (60.66%), Query Frame = 1
BLAST of CSPI03G20720 vs. NCBI nr
Match: gi|571571183|ref|XP_006606789.1| (PREDICTED: uncharacterized protein LOC102659515 [Glycine max]) HSP 1 Score: 159.5 bits (402), Expect = 6.5e-36 Identity = 90/206 (43.69%), Postives = 123/206 (59.71%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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