CSPI03G20710 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G20710
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 16727431 .. 16729173 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAGGTTAATAGTTTAAAAAACATTGCGTCCCATCTTATTCTCATCCCTCTCCCTCGCGCCTCCACCTCTCCCTTCTCAACGTCTTTGCCTTTCGCCTCTACCTCTCCCTCGCGCGTCTTCAAGTCTCCGGCCTACGTCTTCTCAAGTTTCTGACTTCTCCTTCTTTGACGTCTTCTCAAGTATTCGGTGTCTTCTTCTCCTTCGTCTCAAGCCTCCAGCATCTCCTTTTTCGTCCATCTTTGATCTGATACATCCGTTCTATCCTAATCCAACAAAATGAGACCGGTCCGTAGCTTTCACCCATCTCCGATCTCAATATTTGCGTCTCAGATCTGAGACATCTGTTTCGTCCATCTCCAATCTCAAATCTCGATCCTCCTTTGCAGGTACATTAACAAGATGTTGCTTATGCTTTGTATTTTTAAATGGCAGAATTCAAAATCTATCCATTTTGTTTCTTGAATTTTTTAATAATTCAAAAATATATTTTTTACAAAATGTTCAGTCCATCTCCATTTACAAAATGTCATTTACAAAATGTTCAATCCATCTCCAGTCTTGAATATTTTAATAATTCAGAATATATTGTTTAGTGCTGTTGTTTTTAAGTTCATTAAAAAAATGTTAGTATTCTTGAAAAATTAGAGATAGTTCATTGAAAATCAATTACTCAAATTAGCTAGCTTAATAGTTAAGACAGTGACTATGAGAACAAAATTCAAAACTTTTTAGAGTACAAAAAAGTAGAGAGAACATCATTGATTCTGTCTTGTTGTAGTGTTCTTGATCTTGGAAGGATAATTTAATACTATACTAAAGATGCTTCATACCGAACAAATATGAGAACTCTATGAGTTGACCTATTTCTTTGTTATCTCTTTGTATGGTACATAACTATATTTGAGTTTATTGAGATAGTAGCATGTTGAAAATGTTGAAATAACATAAATATTCTATTGAGCTTGTGAGTTCATTGTTGGTTGTATGTTGTGATTATGTTGAGTTTCTGATTTCATTGTTGATTGTCTTGTCCTGATTCTGTTGCGTTTGTGATTTTATTGTTGATTTTGTTGCTGTGATTTTGTTGTGGGTGATTGGGTGATCTGACCTTAGTTTTTTATATTTTTTAGAACATGGAGACAAGTGGTGGACAACATAGTGAAACTAGCCCTAGTCATAGTCCTAGTCCTACCCCTTCCACTAATAATGTTGTGAGTTCAAGTAAACCACCACTATCCGATAAGAAGAGAGCTAGAGTCATTAAGAAGACAACTTTAACTCTATGGGATCACTTCACAAAGTTGGAAGATAATAGTTCTAGGTGCACATGCAGTTATTGTCATAAAGAGTATTGTTCTGATACTACCTCATGTGGAACTAGCACATTATGGAAGCACTTAAAAAATCAATGTAAGAAGTACCCATATAAAGAAGTAGAAACATGACAAACTATTTTGACCCTTCAACCTTCCACTAGTGGAAAAAGTGGTAGTAATTTTGTGACTACTATTTTTAGTCAACAATTATGTAGGGAAGCATGTGCTAAGATGATAATTGTTGATGAGTTTCCATTCAATATTTTAAGTTGTATTATGTGTGGCTATCCTGCTATGGTAGCCAATCATGCATATATTGGTAAAGGTAAATATATTTATAAAATAATTTTTATTTTAATCTAGCACATAATATAATATATATGCATTGTTAATTGGTTGTGTTATAGTGTTCTTTACAAGTAG

mRNA sequence

ATGGAGACAAGTGGTGGACAACATAGTGAAACTAGCCCTAGTCATAGTCCTAGTCCTACCCCTTCCACTAATAATGTTGTGAGTTCAAGTAAACCACCACTATCCGATAAGAAGAGAGCTAGAGTCATTAAGAAGACAACTTTAACTCTATGGGATCACTTCACAAAGTTGGAAGATAATAGTTCTAGGTGCACATGCAGTTATTGTCATAAAGAGTATTGTTCTGATACTACCTCATGTGGAACTAGCACATTATGGAAGCACTTAAAAAATCAATGTAAGAAGTACCCATATAAAGAAGTAGAAACATGA

Coding sequence (CDS)

ATGGAGACAAGTGGTGGACAACATAGTGAAACTAGCCCTAGTCATAGTCCTAGTCCTACCCCTTCCACTAATAATGTTGTGAGTTCAAGTAAACCACCACTATCCGATAAGAAGAGAGCTAGAGTCATTAAGAAGACAACTTTAACTCTATGGGATCACTTCACAAAGTTGGAAGATAATAGTTCTAGGTGCACATGCAGTTATTGTCATAAAGAGTATTGTTCTGATACTACCTCATGTGGAACTAGCACATTATGGAAGCACTTAAAAAATCAATGTAAGAAGTACCCATATAAAGAAGTAGAAACATGA

Homology

[Close]

BLAST of CSPI03G20710 vs. TrEMBL
Match: M5WLC0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026428mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-06
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 1


Query: 8   HSETSPSHSPSPTPSTNNVVSSSKPPLSDKKRARVIKKTTLTLWDHFTKL----EDNSSR 67
           H ++ P  S SP  ST + +   +P            K    +WDH TK+    E + SR
Sbjct: 5   HPQSDPPQSASPK-STPSTLGKRRP-----------SKNASGVWDHLTKIKCEDETSESR 64

Query: 68  CTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYPYK 100
           C C YC K+Y  D    GTSTLW HL++QCK  P +
Sbjct: 65  CICKYCKKDYACDGKRNGTSTLWHHLRSQCKNSPLR 88

[Close]

BLAST of CSPI03G20710 vs. TrEMBL
Match: M5X979_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021201mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1


Query: 9   SETSPSHSPSPTPSTNNVVSSSKPPLSDKKRARVIKKTTLTLWDHFTKL--EDNSS--RC 68
           SET  S +P P    +        PL      R   K    +W+HFTK+  ED++S  RC
Sbjct: 5   SETPISTNPPPPTQVHQSTPVQSAPLPSTLGKRKPSKNASGVWEHFTKIKCEDDTSEPRC 64

Query: 69  TCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYPYK 100
            C YC K Y   + + GTSTLW HL+++CK  P +
Sbjct: 65  ICKYCKKGYACGSKNNGTSTLWHHLRSRCKNSPLR 99

[Close]

BLAST of CSPI03G20710 vs. TrEMBL
Match: O65237_ARATH (Similarity to Ac-like transposase OS=Arabidopsis thaliana GN=T26D22.13 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 44 KKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKY 97
          KK    +WDHFTKL ++ + C C+YC KE    T S GTSTL KHL N CK Y
Sbjct: 45 KKVRSWVWDHFTKLSNDVNHCNCNYCGKELACSTKS-GTSTLKKHLLNICKAY 96

[Close]

BLAST of CSPI03G20710 vs. TrEMBL
Match: M5W3G6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024848mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.3e-06
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 50 LWDHFTKL--EDNSS--RCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCK 95
          +WDHFTK+  ED +S  RC C YC K+Y  D    GTSTLW +L++QCK
Sbjct: 12 VWDHFTKIKCEDETSEPRCICKYCKKDYACDGKRNGTSTLWHYLRSQCK 60

[Close]

BLAST of CSPI03G20710 vs. NCBI nr
Match: gi|1009128155|ref|XP_015881077.1| (PREDICTED: uncharacterized protein LOC107417035 [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1


Query: 30  SKPPLSDKKRARVIKKTTLTLWDHFTKLEDN---SSRCTCSYCHKEYCSDTTSCGTSTLW 89
           SK   S K + R   +    +W+HF K+ ++   + RC   YC  +Y  DT  CG STL 
Sbjct: 29  SKSDKSYKTQKRKPSRVPSWVWEHFEKISNSDPSNPRCKYKYCGVDYACDTKRCGASTLR 88

Query: 90  KHLKNQCKKYPYKEVE 103
            HL NQCKKYP + VE
Sbjct: 89  NHLMNQCKKYPNRTVE 104

[Close]

BLAST of CSPI03G20710 vs. NCBI nr
Match: gi|595887566|ref|XP_007213398.1| (hypothetical protein PRUPE_ppa026428mg [Prunus persica])

HSP 1 Score: 58.9 bits (141), Expect = 6.0e-06
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 1


Query: 8   HSETSPSHSPSPTPSTNNVVSSSKPPLSDKKRARVIKKTTLTLWDHFTKL----EDNSSR 67
           H ++ P  S SP  ST + +   +P            K    +WDH TK+    E + SR
Sbjct: 5   HPQSDPPQSASPK-STPSTLGKRRP-----------SKNASGVWDHLTKIKCEDETSESR 64

Query: 68  CTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYPYK 100
           C C YC K+Y  D    GTSTLW HL++QCK  P +
Sbjct: 65  CICKYCKKDYACDGKRNGTSTLWHHLRSQCKNSPLR 88

[Close]

BLAST of CSPI03G20710 vs. NCBI nr
Match: gi|3047097|gb|AAC13609.1| (contains similarity to transposases [Arabidopsis thaliana])

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-06
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 44 KKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKY 97
          KK    +WDHFTKL ++ + C C+YC KE    T S GTSTL KHL N CK Y
Sbjct: 45 KKVRSWVWDHFTKLSNDVNHCNCNYCGKELACSTKS-GTSTLKKHLLNICKAY 96

[Close]

BLAST of CSPI03G20710 vs. NCBI nr
Match: gi|595960240|ref|XP_007216869.1| (hypothetical protein PRUPE_ppa021201mg [Prunus persica])

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-06
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1


Query: 9   SETSPSHSPSPTPSTNNVVSSSKPPLSDKKRARVIKKTTLTLWDHFTKL--EDNSS--RC 68
           SET  S +P P    +        PL      R   K    +W+HFTK+  ED++S  RC
Sbjct: 5   SETPISTNPPPPTQVHQSTPVQSAPLPSTLGKRKPSKNASGVWEHFTKIKCEDDTSEPRC 64

Query: 69  TCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYPYK 100
            C YC K Y   + + GTSTLW HL+++CK  P +
Sbjct: 65  ICKYCKKGYACGSKNNGTSTLWHHLRSRCKNSPLR 99

The following BLAST results are available for this feature:

BLAST of CSPI03G20710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G20710 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WLC0_PRUPE	4.2e-06	37.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026428mg PE=4 SV=1	[more]
M5X979_PRUPE	5.5e-06	37.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021201mg PE=4 SV=1	[more]
O65237_ARATH	5.5e-06	54.72	Similarity to Ac-like transposase OS=Arabidopsis thaliana GN=T26D22.13 PE=4 SV=1	[more]
M5W3G6_PRUPE	9.3e-06	55.10	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024848mg PE=4 S...	[more]

BLAST of CSPI03G20710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G20710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009128155\|ref\|XP_015881077.1\|	2.1e-06	42.11	PREDICTED: uncharacterized protein LOC107417035 [Ziziphus jujuba]	[more]
gi\|595887566\|ref\|XP_007213398.1\|	6.0e-06	37.50	hypothetical protein PRUPE_ppa026428mg [Prunus persica]	[more]
gi\|3047097\|gb\|AAC13609.1\|	7.8e-06	54.72	contains similarity to transposases [Arabidopsis thaliana]	[more]
gi\|595960240\|ref\|XP_007216869.1\|	7.8e-06	37.89	hypothetical protein PRUPE_ppa021201mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003656	Znf_BED
IPR003656	Znf_BED

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20710.2	CSPI03G20710.2	mRNA
CSPI03G20710.1	CSPI03G20710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003656	Zinc finger, BED-type	PFAM	PF02892	zf-BED	coord: 50..94 score: 3.
IPR003656	Zinc finger, BED-type	SMART	SM00614	bed5	coord: 45..96 score: 1.
IPR003656	Zinc finger, BED-type	PROFILE	PS50808	ZF_BED	coord: 45..100 score: 11
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 50..99 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G20710	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G20710	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G20710	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G20710	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G20710	Watermelon (Charleston Gray)	cpiwcgB236
CSPI03G20710	Watermelon (Charleston Gray)	cpiwcgB241
CSPI03G20710	Cucurbita pepo (Zucchini)	cpecpiB550
CSPI03G20710	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G20710	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G20710	Melon (DHL92) v3.6.1	cpimedB229
CSPI03G20710	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G20710	Silver-seed gourd	carcpiB0520
CSPI03G20710	Silver-seed gourd	carcpiB0798
CSPI03G20710	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G20710	Watermelon (97103) v2	cpiwmbB219
CSPI03G20710	Watermelon (97103) v2	cpiwmbB224
CSPI03G20710	Wax gourd	cpiwgoB271
CSPI03G20710	Cucumber (Gy14) v1	cgycpiB003
CSPI03G20710	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G20710	Cucurbita maxima (Rimu)	cmacpiB458