CSPI03G19830 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G19830
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr3 : 15506122 .. 15506751 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGATGACTTATCAGTGGAGGCTCAATCACATGAGATTCAGAAGATAGTACATGAGATCATAAGTGAAGGTGTGTCACTTGATGATCAATTTCAAGCTGCGGTTATTATTGATAAATTACCTCCTCTGTGGAAGGATTTCAAAAATACTCTAAGTCTCATCACACGATTAAGGATTGATGAAGAGGTGAGAAGACGTGACCAAAAGAAAGATTTGAACGCAATTTCCAGAAAGAAGTCAAACACATTGCTGAAATTGAATATGAAGCCTAAAGAAAATAAAATGGTACACGAATCCAACAACCAAAACAACTCGCAAAAACCTCAGTCCAGAAGTACGGTACAAATTGTTTGCTACAATTGTAATAAGCCTGGACACTTAGCTAGGAATTGTAGAAACAAGAATCATCCTGCTACGCAGGCAAACCTGATAGAAGATGAATATGTAGCTATGATTTCTGAAGTTAATGTCAATGGAGAGTCTGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTTTGTCATGACCTTAAGTTATTTAGAAAGTATAATGAGATAAACGATAAGAAAATCCTTCTAGGAGATCATCACACGACTAAGGTGGCATGCGTTAGAGAAGTATAA

mRNA sequence

ATGACTGATGACTTATCAGTGGAGGCTCAATCACATGAGATTCAGAAGATAGTACATGAGATCATAAGTGAAGGTGTGTCACTTGATGATCAATTTCAAGCTGCGGTTATTATTGATAAATTACCTCCTCTGTGGAAGGATTTCAAAAATACTCTAAGTCTCATCACACGATTAAGGATTGATGAAGAGGTGAGAAGACGTGACCAAAAGAAAGATTTGAACGCAATTTCCAGAAAGAAGTCAAACACATTGCTGAAATTGAATATGAAGCCTAAAGAAAATAAAATGGTACACGAATCCAACAACCAAAACAACTCGCAAAAACCTCAGTCCAGAAGTACGGTACAAATTGTTTGCTACAATTGTAATAAGCCTGGACACTTAGCTAGGAATTGTAGAAACAAGAATCATCCTGCTACGCAGGCAAACCTGATAGAAGATGAATATGTAGCTATGATTTCTGAAGTTAATGTCAATGGAGAGTCTGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTTTGTCATGACCTTAAGTTATTTAGAAAGTATAATGAGATAAACGATAAGAAAATCCTTCTAGGAGATCATCACACGACTAAGGTGGCATGCGTTAGAGAAGTATAA

Coding sequence (CDS)

ATGACTGATGACTTATCAGTGGAGGCTCAATCACATGAGATTCAGAAGATAGTACATGAGATCATAAGTGAAGGTGTGTCACTTGATGATCAATTTCAAGCTGCGGTTATTATTGATAAATTACCTCCTCTGTGGAAGGATTTCAAAAATACTCTAAGTCTCATCACACGATTAAGGATTGATGAAGAGGTGAGAAGACGTGACCAAAAGAAAGATTTGAACGCAATTTCCAGAAAGAAGTCAAACACATTGCTGAAATTGAATATGAAGCCTAAAGAAAATAAAATGGTACACGAATCCAACAACCAAAACAACTCGCAAAAACCTCAGTCCAGAAGTACGGTACAAATTGTTTGCTACAATTGTAATAAGCCTGGACACTTAGCTAGGAATTGTAGAAACAAGAATCATCCTGCTACGCAGGCAAACCTGATAGAAGATGAATATGTAGCTATGATTTCTGAAGTTAATGTCAATGGAGAGTCTGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTTTGTCATGACCTTAAGTTATTTAGAAAGTATAATGAGATAAACGATAAGAAAATCCTTCTAGGAGATCATCACACGACTAAGGTGGCATGCGTTAGAGAAGTATAA
Homology
[Close]
BLAST of CSPI03G19830 vs. TrEMBL
Match: Q0KIN7_SOLDE (Polyprotein, putative OS=Solanum demissum GN=SDM1_27t00018 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-27
Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL-------- 60
           M D+ SV  Q+ +   IV E+ SE V + D      I+DKLPP WK+F+ T+        
Sbjct: 118 MVDNKSVVDQAQDFIMIVGELRSEEVKIGDNLIVCGIVDKLPPSWKEFQKTMRHKQKETS 177

Query: 61  --SLITRLRIDEEVRRRDQ-----------KKDL----NAISRKKSNTLLKLNMKP--KE 120
             +LI ++R++EE R +D            K +L    NA      NT LK   K   K 
Sbjct: 178 LETLIMKIRMEEEARGQDALLQTEENNITTKVNLITSNNATPESHKNTSLKPKKKKFKKN 237

Query: 121 NKMVHESNNQNNSQKPQSRSTVQIVCYNCNKPGHLARNCR-NKNHPATQANLIEDEYVAM 180
           N    + NN  N Q    +   +  C+ C K GH+AR CR  K  P  QAN+ E+ +VA+
Sbjct: 238 NGRPPKKNNGENIQAQNQQVQDKGPCFVCGKSGHIARFCRFRKRGPNPQANVTEEPFVAV 297

Query: 181 ISEVNVNGESEGWWLDTGASRHVCHDLKLFRKYNEIND-KKILLGDHHTTKV 204
           I+++N+    +GWW D+GA+RHVC+D   F+KY    + K I+LGD HTT+V
Sbjct: 298 ITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHFEEPKTIMLGDSHTTQV 349

[Close]
BLAST of CSPI03G19830 vs. TrEMBL
Match: A5AEN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27
Identity = 85/226 (37.61%), Postives = 128/226 (56.64%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL-------- 60
           M D  +V +Q  E+Q I+HEI +EG+ L + FQ A II+KLPP WKDFKN L        
Sbjct: 152 MVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMS 211

Query: 61  --SLITRLRIDEEVRRRDQKKDLNAISRKKSNTLLK-LNMKPKENKMVHESNNQNNSQKP 120
              LI RLRI+E+  RR +KK  + ++  K+N +    + K K N    + +        
Sbjct: 212 IEDLIIRLRIEED-NRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGI 271

Query: 121 QSRSTVQIVCYNCNKPGHLARNCR--NKNHPATQANLIED--------EYVAMISEVNVN 180
             +   Q  C+NC K GH + +CR   KN P  +AN+I+D        +  A++SEVN+ 
Sbjct: 272 SKKPKFQGKCFNCGKQGHKSVDCRLPKKNKP-KEANVIDDITKNVYDIDLTAVVSEVNLV 331

Query: 181 GES-EGWWLDTGASRHVCHDLKLFRKYNEI-NDKKILLGDHHTTKV 204
           G + + WW+DTGA+RHVC D K+F  +  I N +K+ +G+  T+++
Sbjct: 332 GSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEI 375

[Close]
BLAST of CSPI03G19830 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 81/226 (35.84%), Postives = 127/226 (56.19%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL-------- 60
           M D  +V +Q  E+Q I+HEI ++G+ L + FQ A II+KLPP WKDFKN L        
Sbjct: 152 MVDSKTVVSQVQELQVILHEIHADGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMS 211

Query: 61  --SLITRLRIDEEVRRRDQKKDLNAISRKKSNTLLK-LNMKPKENKMVHESNNQNNSQKP 120
              LI RLRI+E+  RR +KK  + ++  ++N +    + K K N    + +        
Sbjct: 212 IEDLIIRLRIEED-NRRSEKKGAHTLNEAQANFVEHGQSSKAKTNNNKGKGSKLGPKGGI 271

Query: 121 QSRSTVQIVCYNCNKPGHLARNCR--NKNHPATQANLIED--------EYVAMISEVNVN 180
             +   Q  C+NC K GH + +CR   KN P  +AN+I++        +   ++SEVN+ 
Sbjct: 272 SKKPKFQGKCFNCGKQGHKSVDCRLPKKNKP-KEANVIDNITKNVSDIDLTTVVSEVNLV 331

Query: 181 GES-EGWWLDTGASRHVCHDLKLFRKYNEI-NDKKILLGDHHTTKV 204
           G + + WW+DTGA+RHVC D K+F  +  I N +K+ +G+  T+++
Sbjct: 332 GSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSTTSEI 375

[Close]
BLAST of CSPI03G19830 vs. TrEMBL
Match: Q60D13_SOLDE (Putative gag and pol polyprotein, identical OS=Solanum demissum GN=SDM1_56t00010 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-23
Identity = 67/180 (37.22%), Postives = 105/180 (58.33%), Query Frame = 1 

Query: 39  DKLPPLWKDFKNTL----------SLITRLRIDEEVRRRD---QKKDLNAISRKKSNTLL 98
           DKLPP WK+F+ T+          + I ++ ++EE R +D   Q ++ N  ++ K     
Sbjct: 23  DKLPPSWKEFQKTMCHKQKETSVETFIMKIHMEEEARGQDALLQIEESNITTKPKKKKFK 82

Query: 99  KLNMKPKENKMVHESNNQNNSQKPQSRSTVQIVCYNCNKPGHLARNCR-NKNHPATQANL 158
           K N +P +    +  NNQ  +Q+ Q +      C+ C K GH+AR CR  K  P  QAN+
Sbjct: 83  KNNGRPPKKN--NGENNQAQNQQVQDKGP----CFVCGKSGHIARFCRFRKRGPNPQANV 142

Query: 159 IEDEYVAMISEVNVNGESEGWWLDTGASRHVCHDLKLFRKYNEIND-KKILLGDHHTTKV 204
            E+ +VA+I+++N+    +GWW+D+GA+RHVC+D   F+KY    + K I+LGD HTT+V
Sbjct: 143 TEEPFVAVITDINMVENVDGWWVDSGANRHVCYDKDWFKKYTHFEEPKTIMLGDAHTTQV 196

[Close]
BLAST of CSPI03G19830 vs. TrEMBL
Match: M5W680_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb014392mg PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.8e-23
Identity = 76/182 (41.76%), Postives = 103/182 (56.59%), Query Frame = 1 

Query: 3   DDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL---------- 62
           D+ SVEAQSHE+ KI+HEII EG++LD+QFQ A+II KLPP WKDFKN L          
Sbjct: 68  DEKSVEAQSHELHKILHEIIIEGMNLDEQFQVAIIIHKLPPSWKDFKNALRHKTKEFSLE 127

Query: 63  SLITRLRIDEEVRRRDQKKDLNAIS---------RKKSNTLLKLNMKPKENKMVHESNNQ 122
           SLITRL I+EE R+ D K+++  IS         R ++   LK N K  + K    +   
Sbjct: 128 SLITRLHIEEEARKHDMKEEVLLISNNNKNHNSNRNQTTAALKTNGKNMKIKTGTATTTT 187

Query: 123 N----NSQKPQSRSTVQI---------------VCYNCNKPGHLARNCRNKNHPATQANL 147
                N+ +    +T++I               +CYN +KPGHLA+NCR ++ PA Q N+
Sbjct: 188 RIEMVNTTRIGILNTIRIGTFIRNRIRVSPPHFLCYNYHKPGHLAQNCRKRSRPAPQVNI 247

[Close]
BLAST of CSPI03G19830 vs. TAIR10
Match: AT4G00980.1 (AT4G00980.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06
Identity = 39/142 (27.46%), Postives = 64/142 (45.07%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTLS------- 60
           M ++  +  Q     KI   I+S G+ LD+ F  + II K PP W+ F   L        
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEYLPV 373

Query: 61  --LITRLRIDEEVRRRDQKKDLNAISRKKSNTLLKLNMKPKENKMVHESNNQNNSQK-PQ 120
             L+ R++ +EE+ R   K     ++ + +    ++   P        S +    +K P+
Sbjct: 374 WMLMERVKAEEELLRNGAK----GVTYRPATGSSQMERTPSLGTTHRGSQSVGWKRKEPE 433

Query: 121 SRSTVQIVCYNCNKPGHLARNC 133
               V IVC NC + GHLA++C
Sbjct: 434 RDERVIIVCDNCGRKGHLAKHC 451

[Close]
BLAST of CSPI03G19830 vs. NCBI nr
Match: gi|694449834|ref|XP_009350471.1| (PREDICTED: uncharacterized protein LOC103941999 [Pyrus x bretschneideri])

HSP 1 Score: 136.0 bits (341), Expect = 7.8e-29
Identity = 85/230 (36.96%), Postives = 131/230 (56.96%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL-------- 60
           MTD   V  Q  E+Q I+HEI +EG+SL + FQ A +I+KLPP WKDFKN L        
Sbjct: 142 MTDSKKVINQVQELQLILHEIHAEGMSLSETFQVAAVIEKLPPAWKDFKNYLKHKRKEMG 201

Query: 61  --SLITRLRIDEEVRRRDQKKDLNAISRKKSNTLLKLNMKPKENKMVHESNNQNNSQKPQ 120
              LI RLRI+E+  R  +KK  + + + K++ +       K+ K   ES++Q N +K +
Sbjct: 202 LEDLIVRLRIEED-NRCSKKKSNSQLMQAKAHIVKGGPKNNKKRKHSGESSSQGNFKKFK 261

Query: 121 SRSTVQIVCYNCNKPGHLARNCRNK------NHPATQANLIEDE----------YVAMIS 180
            +      C+ CNK GH AR CRN+         + + ++ E+E            A++S
Sbjct: 262 GK------CFVCNKTGHRARECRNRKGQDNSKKKSNEVHITEEERLSKEISDINLAAVVS 321

Query: 181 EVNVNGESEGWWLDTGASRHVCHDLKLFRKYNEI-NDKKILLGDHHTTKV 204
           EVN+ G ++ WW+DTGA+RH+C D K+F  Y E+ + +++ +G+  T+KV
Sbjct: 322 EVNMVGNTKEWWVDTGATRHICSDRKMFTIYQEVTHGEQLFMGNSSTSKV 364

[Close]
BLAST of CSPI03G19830 vs. NCBI nr
Match: gi|672207270|ref|XP_008779653.1| (PREDICTED: uncharacterized protein LOC103699411 [Phoenix dactylifera])

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 82/215 (38.14%), Postives = 125/215 (58.14%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL-------- 60
           +TD+  +  Q H++Q IVH+II+EG+ +D++FQ   II KLP  WKD++ TL        
Sbjct: 135 ITDNKPILNQVHDLQLIVHQIIAEGIPIDEKFQVGTIIAKLPSSWKDYRKTLKRKGDFLN 194

Query: 61  --SLITRLRIDEEVRRRDQKKDLNAISRKKSNTLLKLNMKPKENKMVHESNNQNNSQKPQ 120
             SL  +LRI EE R RD++++ NA   K ++ +   N K K       S  +NN +K +
Sbjct: 195 LESLQRQLRI-EEARLRDKQEE-NAKMTKAAHVVEIDNKKGKRPWAGDSSTKENNKKKKK 254

Query: 121 SRSTVQIVCYNCNKPGHLARNCRNKNHPATQANLIEDEYVAMISEVNVNGESEGWWLDTG 180
                   C+ C K GH  + CR K     QAN +E+  VA+I+EVN+   + G W+D G
Sbjct: 255 G------ACHFCKKKGHYIKECRLKKKK-DQANTVEESLVAVITEVNLVSHNAGCWVDIG 314

Query: 181 ASRHVCHDLKLFRKYNEINDK-KILLGDHHTTKVA 205
           A+RH+C D  LF+KY ++ D+ ++ + +  TTKVA
Sbjct: 315 ATRHICSDKNLFKKYEKVGDEIELYMENSSTTKVA 340

[Close]
BLAST of CSPI03G19830 vs. NCBI nr
Match: gi|113205226|gb|ABI34306.1| (Polyprotein, putative [Solanum demissum])

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL-------- 60
           M D+ SV  Q+ +   IV E+ SE V + D      I+DKLPP WK+F+ T+        
Sbjct: 118 MVDNKSVVDQAQDFIMIVGELRSEEVKIGDNLIVCGIVDKLPPSWKEFQKTMRHKQKETS 177

Query: 61  --SLITRLRIDEEVRRRDQ-----------KKDL----NAISRKKSNTLLKLNMKP--KE 120
             +LI ++R++EE R +D            K +L    NA      NT LK   K   K 
Sbjct: 178 LETLIMKIRMEEEARGQDALLQTEENNITTKVNLITSNNATPESHKNTSLKPKKKKFKKN 237

Query: 121 NKMVHESNNQNNSQKPQSRSTVQIVCYNCNKPGHLARNCR-NKNHPATQANLIEDEYVAM 180
           N    + NN  N Q    +   +  C+ C K GH+AR CR  K  P  QAN+ E+ +VA+
Sbjct: 238 NGRPPKKNNGENIQAQNQQVQDKGPCFVCGKSGHIARFCRFRKRGPNPQANVTEEPFVAV 297

Query: 181 ISEVNVNGESEGWWLDTGASRHVCHDLKLFRKYNEIND-KKILLGDHHTTKV 204
           I+++N+    +GWW D+GA+RHVC+D   F+KY    + K I+LGD HTT+V
Sbjct: 298 ITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHFEEPKTIMLGDSHTTQV 349

[Close]
BLAST of CSPI03G19830 vs. NCBI nr
Match: gi|147804664|emb|CAN66637.1| (hypothetical protein VITISV_011340 [Vitis vinifera])

HSP 1 Score: 130.6 bits (327), Expect = 3.3e-27
Identity = 85/226 (37.61%), Postives = 128/226 (56.64%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL-------- 60
           M D  +V +Q  E+Q I+HEI +EG+ L + FQ A II+KLPP WKDFKN L        
Sbjct: 152 MVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMS 211

Query: 61  --SLITRLRIDEEVRRRDQKKDLNAISRKKSNTLLK-LNMKPKENKMVHESNNQNNSQKP 120
              LI RLRI+E+  RR +KK  + ++  K+N +    + K K N    + +        
Sbjct: 212 IEDLIIRLRIEED-NRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGI 271

Query: 121 QSRSTVQIVCYNCNKPGHLARNCR--NKNHPATQANLIED--------EYVAMISEVNVN 180
             +   Q  C+NC K GH + +CR   KN P  +AN+I+D        +  A++SEVN+ 
Sbjct: 272 SKKPKFQGKCFNCGKQGHKSVDCRLPKKNKP-KEANVIDDITKNVYDIDLTAVVSEVNLV 331

Query: 181 GES-EGWWLDTGASRHVCHDLKLFRKYNEI-NDKKILLGDHHTTKV 204
           G + + WW+DTGA+RHVC D K+F  +  I N +K+ +G+  T+++
Sbjct: 332 GSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEI 375

[Close]
BLAST of CSPI03G19830 vs. NCBI nr
Match: gi|955338959|ref|XP_014617124.1| (PREDICTED: uncharacterized protein LOC106794375 [Glycine max])

HSP 1 Score: 126.3 bits (316), Expect = 6.2e-26
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = 1 

Query: 1   MTDDLSVEAQSHEIQKIVHEIISEGVSLDDQFQAAVIIDKLPPLWKDFKNTL-------- 60
           MTDD  VE+QSHEIQKI H+IISEG++LD+QFQ  VIIDKLPP WKDF N L        
Sbjct: 1   MTDDKLVESQSHEIQKIAHDIISEGMALDEQFQVVVIIDKLPPGWKDFINLLRHKTKEFP 60

Query: 61  --SLITRLRIDEEVRRRDQKKDLNAIS-----RKKSNTLLKLNMKPKENKMVHESNNQNN 120
             SL+TRL I+EE  R+D+K ++  +S     RK +  +LK   K  +N+  + SN  N+
Sbjct: 61  LESLLTRLHIEEEAHRQDRKDEVLVVSHNNTKRKNTGAVLKPIGKNFKNQNRNVSNTSNH 120

Query: 121 SQKP------------QSRSTVQIVCYNCNKPGHLARNCRNKNHP-ATQANLIED 148
           ++ P            ++      VCYNC KPGH+AR CRN +   A QAN+ ++
Sbjct: 121 NKNPPRVQHARQHPLAKNNPGESFVCYNCGKPGHMARKCRNPSMTGAPQANMTQE 175

The following BLAST results are available for this feature:
BLAST of CSPI03G19830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G19830 vs. TrEMBL
Match NameE-valueIdentityDescription
Q0KIN7_SOLDE1.0e-2737.07Polyprotein, putative OS=Solanum demissum GN=SDM1_27t00018 PE=4 SV=1[more]
A5AEN5_VITVI2.3e-2737.61Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1[more]
A5AMN2_VITVI1.6e-2535.84Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1[more]
Q60D13_SOLDE4.5e-2337.22Putative gag and pol polyprotein, identical OS=Solanum demissum GN=SDM1_56t00010... [more]
M5W680_PRUPE5.8e-2341.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb014392mg PE=4 SV=1[more]
BLAST of CSPI03G19830 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00980.12.6e-0627.46 zinc knuckle (CCHC-type) family protein[more]
BLAST of CSPI03G19830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|694449834|ref|XP_009350471.1|7.8e-2936.96PREDICTED: uncharacterized protein LOC103941999 [Pyrus x bretschneideri][more]
gi|672207270|ref|XP_008779653.1|1.1e-2738.14PREDICTED: uncharacterized protein LOC103699411 [Phoenix dactylifera][more]
gi|113205226|gb|ABI34306.1|1.5e-2737.07Polyprotein, putative [Solanum demissum][more]
gi|147804664|emb|CAN66637.1|3.3e-2737.61hypothetical protein VITISV_011340 [Vitis vinifera][more]
gi|955338959|ref|XP_014617124.1|6.2e-2645.14PREDICTED: uncharacterized protein LOC106794375 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G19830.1CSPI03G19830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 117..136
score: 2.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 118..133
score: 2.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 118..134
score: 4.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 119..134
score: 10
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 97..139
score: 4.1
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..209
score: 2.3
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 1..209
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G19830Watermelon (97103) v2cpiwmbB177
CSPI03G19830Watermelon (97103) v2cpiwmbB221
CSPI03G19830Wax gourdcpiwgoB263
CSPI03G19830Wax gourdcpiwgoB283
CSPI03G19830Wild cucumber (PI 183967)cpicpiB114
CSPI03G19830Cucumber (Gy14) v1cgycpiB003
CSPI03G19830Cucumber (Gy14) v1cgycpiB321
CSPI03G19830Cucurbita maxima (Rimu)cmacpiB290
CSPI03G19830Cucurbita maxima (Rimu)cmacpiB327
CSPI03G19830Cucurbita maxima (Rimu)cmacpiB417
CSPI03G19830Cucurbita moschata (Rifu)cmocpiB280
CSPI03G19830Cucurbita moschata (Rifu)cmocpiB318
CSPI03G19830Cucurbita moschata (Rifu)cmocpiB402
CSPI03G19830Cucurbita moschata (Rifu)cmocpiB405
CSPI03G19830Cucurbita moschata (Rifu)cmocpiB601
CSPI03G19830Cucumber (Chinese Long) v2cpicuB120
CSPI03G19830Cucumber (Chinese Long) v2cpicuB139
CSPI03G19830Melon (DHL92) v3.5.1cpimeB169
CSPI03G19830Melon (DHL92) v3.5.1cpimeB241
CSPI03G19830Watermelon (Charleston Gray)cpiwcgB207
CSPI03G19830Watermelon (Charleston Gray)cpiwcgB237
CSPI03G19830Watermelon (97103) v1cpiwmB242
CSPI03G19830Watermelon (97103) v1cpiwmB258
CSPI03G19830Cucurbita pepo (Zucchini)cpecpiB032
CSPI03G19830Cucurbita pepo (Zucchini)cpecpiB209
CSPI03G19830Cucurbita pepo (Zucchini)cpecpiB723
CSPI03G19830Bottle gourd (USVL1VR-Ls)cpilsiB151
CSPI03G19830Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G19830Melon (DHL92) v3.6.1cpimedB160
CSPI03G19830Melon (DHL92) v3.6.1cpimedB239
CSPI03G19830Cucumber (Gy14) v2cgybcpiB110
CSPI03G19830Cucumber (Gy14) v2cgybcpiB210
CSPI03G19830Silver-seed gourdcarcpiB0573
CSPI03G19830Silver-seed gourdcarcpiB0575
CSPI03G19830Silver-seed gourdcarcpiB1024
CSPI03G19830Cucumber (Chinese Long) v3cpicucB144
CSPI03G19830Cucumber (Chinese Long) v3cpicucB166