CSPI03G18700 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G18700
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransposon protein, putative, CACTA, En/Spm sub-class, expressed
LocationChr3 : 14309176 .. 14309376 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTACTATCCCTACTTCATTCTACGAAGCTAAACGAAAATTGTGTGACTTACACCTAAGATACGAGTCTATTCATGCTCGTAAGTACAATTGCGTATTGTATTGGAAGGAATTTGGTGATTTGCAACATTGCCCAATTTGTGGTGAGTCTCGATACATGGTTAATGATAACAAAGGGAATAAAATTTTGTATAAG

mRNA sequence

ATGGGTATTACTATCCCTACTTCATTCTACGAAGCTAAACGAAAATTGTGTGACTTACACCTAAGATACGAGTCTATTCATGCTCGTAAGTACAATTGCGTATTGTATTGGAAGGAATTTGGTGATTTGCAACATTGCCCAATTTGTGGTGAGTCTCGATACATGGTTAATGATAACAAAGGGAATAAAATTTTGTATAAG

Coding sequence (CDS)

ATGGGTATTACTATCCCTACTTCATTCTACGAAGCTAAACGAAAATTGTGTGACTTACACCTAAGATACGAGTCTATTCATGCTCGTAAGTACAATTGCGTATTGTATTGGAAGGAATTTGGTGATTTGCAACATTGCCCAATTTGTGGTGAGTCTCGATACATGGTTAATGATAACAAAGGGAATAAAATTTTGTATAAG
Homology
[Close]
BLAST of CSPI03G18700 vs. TrEMBL
Match: A5B8Q2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003315 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-13
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 2   GITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNKG 61
           G  +P+  Y+AK+ L DL L YE IHA K++C L+WKE   L  CPIC E RY +ND KG
Sbjct: 207 GTNLPSCTYDAKKMLRDLGLGYEKIHACKFDCALFWKENEFLDKCPICDEDRYKINDGKG 266

Query: 62  NKILYK 68
            KI +K
Sbjct: 267 KKIPHK 272

[Close]
BLAST of CSPI03G18700 vs. TrEMBL
Match: A0A067DFY3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042024mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.5e-12
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1 

Query: 2   GITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNKG 61
           G  IPTS+YEAK+ LCDL LRYESIHA   +C+L+WKE  D    PI  E RY  ++ KG
Sbjct: 129 GSNIPTSYYEAKKMLCDLGLRYESIHACGNDCILFWKENVDADKYPIWDEPRYKFDNGKG 188

Query: 62  NKI 65
            KI
Sbjct: 189 KKI 191

[Close]
BLAST of CSPI03G18700 vs. TrEMBL
Match: A5AGY3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032667 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-11
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 5   IPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNKGNKI 64
           IP ++Y+AK+ L DL L Y+SIHA KY+C L+WKE   L  CP+C E RY   + KG KI
Sbjct: 190 IPKTYYDAKKMLRDLGLGYDSIHACKYDCALFWKENETLDKCPVCDEPRYKFXNGKGKKI 249

Query: 65  LYK 68
             K
Sbjct: 250 PQK 252

[Close]
BLAST of CSPI03G18700 vs. TrEMBL
Match: I1NQ68_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 2  GITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNK 61
          G T+P S+YEAK+ L DL L YESIHA   +CVL+WKE  D   CP+C ESR+ ++  K
Sbjct: 13 GDTLPASYYEAKKMLRDLGLGYESIHACINDCVLFWKELEDYDKCPVCNESRWKIHKGK 71

[Close]
BLAST of CSPI03G18700 vs. TrEMBL
Match: Q0JKT8_ORYSJ (Os01g0650800 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0650800 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 2  GITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNK 61
          G T+P S+YEAK+ L DL L YESIHA   +CVL+WKE  D   CP+C ESR+ ++  K
Sbjct: 13 GDTLPASYYEAKKMLRDLGLGYESIHACINDCVLFWKELEDYDKCPVCNESRWKIHKGK 71

[Close]
BLAST of CSPI03G18700 vs. NCBI nr
Match: gi|659111575|ref|XP_008455800.1| (PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 1   MGITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNK 60
           +G  IP S YEAKR+LCD+ L Y+SIHA KY+CVL+ K+F + Q C +CGESRY ++  K
Sbjct: 185 IGTYIPKSLYEAKRRLCDIGLGYDSIHACKYDCVLFRKKFANCQSCLVCGESRYKMDSGK 244

Query: 61  GNKI 65
           G KI
Sbjct: 245 GKKI 248

[Close]
BLAST of CSPI03G18700 vs. NCBI nr
Match: gi|659126160|ref|XP_008463041.1| (PREDICTED: uncharacterized protein LOC103501282 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 2   GITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNKG 61
           G+ +P S+YEAK++L DL + YESIH  K++C L+WK++  L  CP CGESRY +ND K 
Sbjct: 88  GVKLPASYYEAKKRLRDLGMGYESIHVCKFDCALFWKDYASLDKCPHCGESRYRLNDKKR 147

Query: 62  NKILYK 68
            +I +K
Sbjct: 148 KQIPHK 153

[Close]
BLAST of CSPI03G18700 vs. NCBI nr
Match: gi|848927834|ref|XP_012827603.1| (PREDICTED: uncharacterized protein LOC105948893 isoform X1 [Erythranthe guttata])

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 2   GITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNKG 61
           G T+P S+Y+AK+ L DL L Y +IHA KY+C L+WK++ + Q CP+CG SR+ VN+ KG
Sbjct: 201 GETLPKSYYDAKKILNDLGLGYTAIHACKYDCALFWKDYENCQDCPVCGTSRWKVNNGKG 260

Query: 62  NKILYK 68
            KI +K
Sbjct: 261 KKIPHK 266

[Close]
BLAST of CSPI03G18700 vs. NCBI nr
Match: gi|848927840|ref|XP_012827605.1| (PREDICTED: uncharacterized protein LOC105948893 isoform X2 [Erythranthe guttata])

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 2   GITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNKG 61
           G T+P S+Y+AK+ L DL L Y +IHA KY+C L+WK++ + Q CP+CG SR+ VN+ KG
Sbjct: 193 GETLPKSYYDAKKILNDLGLGYTAIHACKYDCALFWKDYENCQDCPVCGTSRWKVNNGKG 252

Query: 62  NKILYK 68
            KI +K
Sbjct: 253 KKIPHK 258

[Close]
BLAST of CSPI03G18700 vs. NCBI nr
Match: gi|147861987|emb|CAN78763.1| (hypothetical protein VITISV_003315 [Vitis vinifera])

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-13
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 2   GITIPTSFYEAKRKLCDLHLRYESIHARKYNCVLYWKEFGDLQHCPICGESRYMVNDNKG 61
           G  +P+  Y+AK+ L DL L YE IHA K++C L+WKE   L  CPIC E RY +ND KG
Sbjct: 207 GTNLPSCTYDAKKMLRDLGLGYEKIHACKFDCALFWKENEFLDKCPICDEDRYKINDGKG 266

Query: 62  NKILYK 68
            KI +K
Sbjct: 267 KKIPHK 272

The following BLAST results are available for this feature:
BLAST of CSPI03G18700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18700 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B8Q2_VITVI5.1e-1353.03Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003315 PE=4 SV=1[more]
A0A067DFY3_CITSI2.5e-1257.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042024mg PE=4 SV=1[more]
A5AGY3_VITVI1.6e-1152.38Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032667 PE=4 SV=1[more]
I1NQ68_ORYGL3.6e-1154.24Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1[more]
Q0JKT8_ORYSJ3.6e-1154.24Os01g0650800 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0650800 ... [more]
BLAST of CSPI03G18700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G18700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111575|ref|XP_008455800.1|1.7e-1457.81PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo][more]
gi|659126160|ref|XP_008463041.1|1.7e-1451.52PREDICTED: uncharacterized protein LOC103501282 [Cucumis melo][more]
gi|848927834|ref|XP_012827603.1|5.0e-1453.03PREDICTED: uncharacterized protein LOC105948893 isoform X1 [Erythranthe guttata][more]
gi|848927840|ref|XP_012827605.1|5.0e-1453.03PREDICTED: uncharacterized protein LOC105948893 isoform X2 [Erythranthe guttata][more]
gi|147861987|emb|CAN78763.1|7.3e-1353.03hypothetical protein VITISV_003315 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18700.1CSPI03G18700.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 67..67
scor
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 5..59
score: 6.9
NoneNo IPR availablePANTHERPTHR10775:SF93SUBFAMILY NOT NAMEDcoord: 5..59
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G18700Cucurbita maxima (Rimu)cmacpiB326
CSPI03G18700Cucurbita maxima (Rimu)cmacpiB705
CSPI03G18700Cucurbita moschata (Rifu)cmocpiB315
CSPI03G18700Cucurbita moschata (Rifu)cmocpiB698
CSPI03G18700Cucumber (Chinese Long) v2cpicuB120
CSPI03G18700Melon (DHL92) v3.5.1cpimeB241
CSPI03G18700Watermelon (Charleston Gray)cpiwcgB237
CSPI03G18700Watermelon (97103) v1cpiwmB242
CSPI03G18700Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G18700Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G18700Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G18700Melon (DHL92) v3.6.1cpimedB239
CSPI03G18700Cucumber (Gy14) v2cgybcpiB110
CSPI03G18700Silver-seed gourdcarcpiB0405
CSPI03G18700Silver-seed gourdcarcpiB0685
CSPI03G18700Cucumber (Chinese Long) v3cpicucB144
CSPI03G18700Watermelon (97103) v2cpiwmbB221
CSPI03G18700Wax gourdcpiwgoB283