CSPI03G18610 (gene) Wild cucumber (PI 183967)

NameCSPI03G18610
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionDNA/RNA polymerases superfamily protein
LocationChr3 : 14251770 .. 14252006 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGCCCCGAAGAGAGAAAGGTGAAATTAGCAACTTTTCTATTACAAGATAGCGCAGAAGACTGGTGGATTCTCCATGCGGTTAGGACGTGTGGAGAAGGCCTCATCGCGTGGAAAGAATTCAAAAATGCCTTCAAGAATAAGTTTTACCCACATTCCTTCTGTGACGTGAAGAGAAATGAGTTTATGAGTTTGGTACAAGGCGACATGACTGTTGCAGAATATGAAAAATGA

mRNA sequence

ATGGATTGCCCCGAAGAGAGAAAGGTGAAATTAGCAACTTTTCTATTACAAGATAGCGCAGAAGACTGGTGGATTCTCCATGCGGTTAGGACGTGTGGAGAAGGCCTCATCGCGTGGAAAGAATTCAAAAATGCCTTCAAGAATAAGTTTTACCCACATTCCTTCTGTGACGTGAAGAGAAATGAGTTTATGAGTTTGGTACAAGGCGACATGACTGTTGCAGAATATGAAAAATGA

Coding sequence (CDS)

ATGGATTGCCCCGAAGAGAGAAAGGTGAAATTAGCAACTTTTCTATTACAAGATAGCGCAGAAGACTGGTGGATTCTCCATGCGGTTAGGACGTGTGGAGAAGGCCTCATCGCGTGGAAAGAATTCAAAAATGCCTTCAAGAATAAGTTTTACCCACATTCCTTCTGTGACGTGAAGAGAAATGAGTTTATGAGTTTGGTACAAGGCGACATGACTGTTGCAGAATATGAAAAATGA
BLAST of CSPI03G18610 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.3e-11
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 1   MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEG--LIAWKEFKNAFKNKFYPHSFCDV 60
           ++CP E +V+LATFLL+ +A  WW   AV+   E    I W+EF+  F + FYP S+   
Sbjct: 108 LECPAEDRVRLATFLLKGNAYHWW--KAVKRGYENPAAINWEEFQRVFSDPFYPPSYKQA 167

Query: 61  KRNEFMSLVQGDMTVAEYE 78
           K++EF+ L QG M+V EYE
Sbjct: 168 KKSEFLYLKQGSMSVVEYE 184

BLAST of CSPI03G18610 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-11
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 1   MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEG--LIAWKEFKNAFKNKFYPHSFCDV 60
           ++CP E +V+LATFLL+ +A  WW   AV+   E    I W+EF+  F  +FYP S+   
Sbjct: 108 LECPAEDRVRLATFLLKGNAYHWW--KAVKRGYENPAAINWEEFQRVFSEQFYPPSYRHA 167

Query: 61  KRNEFMSLVQGDMTVAEYE 78
           K++EF+ L QG M+V EYE
Sbjct: 168 KKSEFLYLKQGSMSVMEYE 184

BLAST of CSPI03G18610 vs. TrEMBL
Match: F6HMZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04430 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-11
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1

Query: 1   MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKR 60
           +DC EE+K   A F+L   A+ WW +       +G I W++FK AF  K++P S    K 
Sbjct: 296 IDCSEEQKASYAAFMLDKEADHWWRMTRRLLEDQGPITWRQFKEAFYKKYFPDSVRRQKV 355

Query: 61  NEFMSLVQGDMTVAEYE 78
            EF+ L +GDMTVA+YE
Sbjct: 356 GEFIHLERGDMTVAQYE 372

BLAST of CSPI03G18610 vs. TrEMBL
Match: Q84KB1_CUCME (Gag-protease polyprotein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-11
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1

Query: 1   MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGE-GLIAWKEFKNAFKNKFYPHSFCDVK 60
           M CPE++KV+ A F+L D    WW        G+   I W++FK +F  KF+  S  D K
Sbjct: 95  MKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAK 154

Query: 61  RNEFMSLVQGDMTVAEYE 78
           R EF++L QGDMTV +Y+
Sbjct: 155 RQEFLNLEQGDMTVEQYD 172

BLAST of CSPI03G18610 vs. TrEMBL
Match: E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-11
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1

Query: 1   MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGE-GLIAWKEFKNAFKNKFYPHSFCDVK 60
           M CPE++KV+ A F+L D    WW        G+   I W++FK +F  KF+  S  D K
Sbjct: 367 MKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAK 426

Query: 61  RNEFMSLVQGDMTVAEYE 78
           R EF++L QGDMTV +Y+
Sbjct: 427 RQEFLNLEQGDMTVEQYD 444

BLAST of CSPI03G18610 vs. NCBI nr
Match: gi|659111571|ref|XP_008455797.1| (PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1

Query: 1   MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKR 60
           ++C EE+KVKLATFLLQ SA+DWW  HA R  G   + W+EF+ A ++KFYP SFCD KR
Sbjct: 26  IECSEEKKVKLATFLLQSSAKDWWTFHAARVGGTKYVMWEEFRKALRDKFYPCSFCDEKR 85

Query: 61  NEFMSLVQGDMTVAEYEK 79
            +FMSL+QGDMTV EYEK
Sbjct: 86  KKFMSLLQGDMTVIEYEK 103

BLAST of CSPI03G18610 vs. NCBI nr
Match: gi|659098594|ref|XP_008450217.1| (PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1

Query: 1   MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKR 60
           ++ P+ERKVKLATFLLQ   EDWWIL+A R  G  ++ W+ F+  F+ KFYPH F D KR
Sbjct: 88  LEWPKERKVKLATFLLQGGTEDWWILYAARVGGVNIVMWEGFRKGFQEKFYPHLFVDTKR 147

Query: 61  NEFMSLVQGDMTVAEYE 78
            EF++L QG+MT+AEYE
Sbjct: 148 KEFLNLKQGNMTIAEYE 164

BLAST of CSPI03G18610 vs. NCBI nr
Match: gi|659131051|ref|XP_008465483.1| (PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-17
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 1

Query: 3  CPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNE 62
          C +ERKVKL TFLL+ S EDWW L    T G   + W+ F+  F+ KFYPH F D KR E
Sbjct: 22 CHKERKVKLVTFLLRGSTEDWWTLCVAITEGVEFVTWRYFQREFQKKFYPHLFVDEKRRE 81

Query: 63 FMSLVQGDMTVAEYEK 79
          F+ LVQGD TVA+Y K
Sbjct: 82 FLRLVQGDETVAQYGK 97

BLAST of CSPI03G18610 vs. NCBI nr
Match: gi|659113911|ref|XP_008456815.1| (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 4.9e-16
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1

Query: 1   MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKR 60
           M CP+ERKV+LATFLLQ  AE WW     R      + W+ F+  F+ K+YP ++C+ KR
Sbjct: 38  MSCPQERKVRLATFLLQKEAEGWWKSIIARCNDARTLDWQTFRGIFEEKYYPTTYCEAKR 97

Query: 61  NEFMSLVQGDMTVAEYE 78
           +EF+ L QG ++VAEYE
Sbjct: 98  DEFLELKQGSLSVAEYE 114

BLAST of CSPI03G18610 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 6.3e-16
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1

Query: 1  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKR 60
          M CP+ERKV+LATFLLQ  AE WW     R      + W+ F+  F+ K+YP ++C+ KR
Sbjct: 1  MSCPQERKVRLATFLLQKEAEGWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKR 60

Query: 61 NEFMSLVQGDMTVAEYEK 79
          +EF+ L QG +++AEYE+
Sbjct: 61 DEFLELKQGSLSMAEYER 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M5XSR7_PRUPE3.3e-1145.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1[more]
M5VK25_PRUPE4.3e-1145.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
F6HMZ9_VITVI4.3e-1142.86Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g04430 PE=4 SV=... [more]
Q84KB1_CUCME5.6e-1143.59Gag-protease polyprotein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB7_CUCME5.6e-1143.59Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659111571|ref|XP_008455797.1|1.1e-2364.10PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo][more]
gi|659098594|ref|XP_008450217.1|3.8e-2158.44PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo][more]
gi|659131051|ref|XP_008465483.1|2.0e-1756.58PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo][more]
gi|659113911|ref|XP_008456815.1|4.9e-1649.35PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
gi|659118041|ref|XP_008458920.1|6.3e-1647.44PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18610.1CSPI03G18610.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 10..77
score: 1.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None