CSPI03G18350 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G18350
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Chr3 : 13996669 .. 13996976 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACCGGTGGCTTATAAGTTAAAGTTACCTATGGAGCTATCTAGAATTCATAATGTCTTTCACGTTTCAATGTTACGAAAGTATGCTCCAAATTCCTTGCATATACTCCAAAAGCAACCGTTAGAGGTGAAAAAAACTTGACTTATGAAGAAAGACTCTTGTGTGTGTTAGACAGAAAGGAACAAGTATTGAAAACCAAGGTGATTCCTATGAGCAAAATTTTGCAGAGCAACCATGGCGTTGAAGAAGCCACTTGGGAAAGTGAGGAATTAATGAAAGCTAAGTACCCACAACTCTTCGCATAA

mRNA sequence

ATGGGACCGGTGGCTTATAAGTTAAAGTTACCTATGGAGCTATCTAGAATTCATAATGTCTTTCACGTTTCAATGTTACGAAAAAAGGAACAAGTATTGAAAACCAAGGTGATTCCTATGAGCAAAATTTTGCAGAGCAACCATGGCGTTGAAGAAGCCACTTGGGAAAGTGAGGAATTAATGAAAGCTAAGTACCCACAACTCTTCGCATAA

Coding sequence (CDS)

ATGGGACCGGTGGCTTATAAGTTAAAGTTACCTATGGAGCTATCTAGAATTCATAATGTCTTTCACGTTTCAATGTTACGAAAAAAGGAACAAGTATTGAAAACCAAGGTGATTCCTATGAGCAAAATTTTGCAGAGCAACCATGGCGTTGAAGAAGCCACTTGGGAAAGTGAGGAATTAATGAAAGCTAAGTACCCACAACTCTTCGCATAA

Homology

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BLAST of CSPI03G18350 vs. TrEMBL
Match: A5BAE2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043730 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 1   MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
           +G +AYKL LP +LS IH+VFHVSML+K                                
Sbjct: 652 IGDIAYKLVLPPQLSSIHDVFHVSMLKKYEPNINHVLDWQDLNLQEDITYEEGLREILDN 711

Query: 61  KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
           KE+VL+TK IP+ K+L  +HGVEE TWE E  M+ KYP+LF
Sbjct: 712 KEEVLRTKTIPLVKVLWDHHGVEETTWELESDMRKKYPELF 752

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BLAST of CSPI03G18350 vs. TrEMBL
Match: A0A061FBA9_THECC (Gag protease polyprotein OS=Theobroma cacao GN=TCM_033093 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-11
Identity = 45/101 (44.55%), Postives = 54/101 (53.47%), Query Frame = 1


Query: 1   MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
           +GP+AYKL+LP+EL  IHNVFHVSML+K                                
Sbjct: 27  IGPIAYKLELPLELDWIHNVFHVSMLKKYVPDPSHILETPPIELHEDLKFEVQPVRILDQ 86

Query: 61  KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
           K+QVL+ K IPM KIL  N  VEE TWE E  M+ +YP LF
Sbjct: 87  KDQVLRNKSIPMVKILWKNARVEEMTWEVEHQMRNQYPYLF 127

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BLAST of CSPI03G18350 vs. TrEMBL
Match: A5BBP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027150 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-11
Identity = 44/101 (43.56%), Postives = 52/101 (51.49%), Query Frame = 1


Query: 1    MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
            +GPVAYKL LP +LS +H+VFHVSMLRK                                
Sbjct: 1392 VGPVAYKLILPQQLSLVHDVFHVSMLRKCTPDPTWVVDMQDVQISEDTSYVEEPLRILEV 1451

Query: 61   KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
             E   K KVIP  K+   +HG+EEATWE EE M+  YPQLF
Sbjct: 1452 GEHRFKNKVIPAVKVWWQHHGIEEATWEPEEEMRRHYPQLF 1492

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BLAST of CSPI03G18350 vs. TrEMBL
Match: A5C7C2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041136 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-11
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 1


Query: 1   MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
           +GPVAYKL LP +LS +H+VFHVSMLRK                                
Sbjct: 274 VGPVAYKLILPQQLSLVHDVFHVSMLRKCTPDPTWVVDLQDVQIREDTSYVEEPLRILEV 333

Query: 61  KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
            E   + KVIP+ K+   +HG+EEATWE EE M+  YPQLF
Sbjct: 334 GEHRFRNKVIPVVKVWWQHHGIEEATWEPEEEMRRHYPQLF 374

[Close]

BLAST of CSPI03G18350 vs. TrEMBL
Match: A5AGW4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016361 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-11
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 1


Query: 1    MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
            +G VAYKL LP +LS IH+VFHVSMLRK                                
Sbjct: 938  IGEVAYKLALPPQLSGIHDVFHVSMLRKYEPDTTHVLDWQDLNLQEDVTYEEGPRQILDK 997

Query: 61   KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
            KE+VL+TK+IP+ K+   +HGVE ATWE E  M+ KY +LF
Sbjct: 998  KEKVLRTKIIPLVKVSWDHHGVEGATWELESDMRNKYXELF 1038

[Close]

BLAST of CSPI03G18350 vs. NCBI nr
Match: gi|659082062|ref|XP_008441648.1| (PREDICTED: uncharacterized protein LOC103485729 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 1   MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
           +GP  Y+L LPMELSRIH+VFHVS+L K                                
Sbjct: 97  IGPATYRLALPMELSRIHDVFHVSILHKYVPDPSHILEAQSVHLKENFSYKEEPIQILDK 156

Query: 61  KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
           KEQ+L+ KV P+ K+L  NH +EE+TWE+E+ MKA+YP LF
Sbjct: 157 KEQMLRNKVEPLVKVLWRNHNIEESTWETEQAMKARYPHLF 197

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BLAST of CSPI03G18350 vs. NCBI nr
Match: gi|657998112|ref|XP_008391446.1| (PREDICTED: uncharacterized protein LOC103453662 [Malus domestica])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 48/101 (47.52%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 1   MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
           +G VAYKL+LP ELS IHNVFHVSMLRK                                
Sbjct: 105 IGAVAYKLELPPELSLIHNVFHVSMLRKYVPDPSHIIQIEPLEVNPDASYVEEPVAILDR 164

Query: 61  KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
            ++VL+ KVIP+ K+L  NH VEEATWE+EELM+ +YP LF
Sbjct: 165 PDKVLRNKVIPLVKVLWRNHAVEEATWETEELMQNQYPFLF 205

[Close]

BLAST of CSPI03G18350 vs. NCBI nr
Match: gi|764567124|ref|XP_011462115.1| (PREDICTED: uncharacterized protein LOC105350846 [Fragaria vesca subsp. vesca])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-13
Identity = 48/101 (47.52%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 1   MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
           +G +AY+L LP ELSRIHNVFHVSMLRK                                
Sbjct: 117 VGSLAYRLALPPELSRIHNVFHVSMLRKYIADPSHVLQEQPISLTRDLTYEEEPVQILDR 176

Query: 61  KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
           KEQVL+ K IP+ K+L  +H VEEATWESEE M  +YP LF
Sbjct: 177 KEQVLRNKTIPLVKVLWRSHQVEEATWESEEQMMQQYPYLF 217

[Close]

BLAST of CSPI03G18350 vs. NCBI nr
Match: gi|147776131|emb|CAN76625.1| (hypothetical protein VITISV_043730 [Vitis vinifera])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1


Query: 1   MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
           +G +AYKL LP +LS IH+VFHVSML+K                                
Sbjct: 652 IGDIAYKLVLPPQLSSIHDVFHVSMLKKYEPNINHVLDWQDLNLQEDITYEEGLREILDN 711

Query: 61  KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
           KE+VL+TK IP+ K+L  +HGVEE TWE E  M+ KYP+LF
Sbjct: 712 KEEVLRTKTIPLVKVLWDHHGVEETTWELESDMRKKYPELF 752

[Close]

BLAST of CSPI03G18350 vs. NCBI nr
Match: gi|658064690|ref|XP_008368288.1| (PREDICTED: uncharacterized protein LOC103431892 [Malus domestica])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 1   MGPVAYKLKLPMELSRIHNVFHVSMLRK-------------------------------- 60
           +G VAY+L+LP E+S IHNVFHVSMLRK                                
Sbjct: 61  IGAVAYRLELPPEMSMIHNVFHVSMLRKYVPDPSHVIQPEPLEVSPDLSYVEEPVAIVDR 120

Query: 61  KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF 70
           +++VL+ K IP+ K+L  NH  EEATWE+EE M+A+YP LF
Sbjct: 121 QDKVLRNKTIPLVKVLWRNHAFEEATWETEEQMRAQYPFLF 161

The following BLAST results are available for this feature:

BLAST of CSPI03G18350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G18350 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BAE2_VITVI	2.0e-12	43.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043730 PE=4 SV=1	[more]
A0A061FBA9_THECC	1.0e-11	44.55	Gag protease polyprotein OS=Theobroma cacao GN=TCM_033093 PE=4 SV=1	[more]
A5BBP7_VITVI	2.3e-11	43.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027150 PE=4 SV=1	[more]
A5C7C2_VITVI	2.9e-11	42.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041136 PE=4 SV=1	[more]
A5AGW4_VITVI	5.0e-11	43.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016361 PE=4 SV=1	[more]

BLAST of CSPI03G18350 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G18350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082062\|ref\|XP_008441648.1\|	2.0e-13	43.56	PREDICTED: uncharacterized protein LOC103485729 [Cucumis melo]	[more]
gi\|657998112\|ref\|XP_008391446.1\|	2.0e-13	47.52	PREDICTED: uncharacterized protein LOC103453662 [Malus domestica]	[more]
gi\|764567124\|ref\|XP_011462115.1\|	2.6e-13	47.52	PREDICTED: uncharacterized protein LOC105350846 [Fragaria vesca subsp. vesca]	[more]
gi\|147776131\|emb\|CAN76625.1\|	2.9e-12	43.56	hypothetical protein VITISV_043730 [Vitis vinifera]	[more]
gi\|658064690\|ref\|XP_008368288.1\|	2.9e-12	43.56	PREDICTED: uncharacterized protein LOC103431892 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G18350.1	CSPI03G18350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..70 score: 5.3
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 1..70 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G18350	Cucumber (Gy14) v1	cgycpiB333
CSPI03G18350	Cucumber (Gy14) v1	cgycpiB366
CSPI03G18350	Cucurbita maxima (Rimu)	cmacpiB125
CSPI03G18350	Cucurbita maxima (Rimu)	cmacpiB326
CSPI03G18350	Cucurbita maxima (Rimu)	cmacpiB520
CSPI03G18350	Cucurbita maxima (Rimu)	cmacpiB705
CSPI03G18350	Cucurbita moschata (Rifu)	cmocpiB120
CSPI03G18350	Cucurbita moschata (Rifu)	cmocpiB315
CSPI03G18350	Cucurbita moschata (Rifu)	cmocpiB510
CSPI03G18350	Cucurbita moschata (Rifu)	cmocpiB698
CSPI03G18350	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G18350	Cucumber (Chinese Long) v2	cpicuB165
CSPI03G18350	Melon (DHL92) v3.5.1	cpimeB185
CSPI03G18350	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G18350	Watermelon (Charleston Gray)	cpiwcgB217
CSPI03G18350	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G18350	Watermelon (97103) v1	cpiwmB242
CSPI03G18350	Watermelon (97103) v1	cpiwmB271
CSPI03G18350	Cucurbita pepo (Zucchini)	cpecpiB208
CSPI03G18350	Cucurbita pepo (Zucchini)	cpecpiB388
CSPI03G18350	Bottle gourd (USVL1VR-Ls)	cpilsiB188
CSPI03G18350	Bottle gourd (USVL1VR-Ls)	cpilsiB209
CSPI03G18350	Melon (DHL92) v3.6.1	cpimedB180
CSPI03G18350	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G18350	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G18350	Cucumber (Gy14) v2	cgybcpiB315
CSPI03G18350	Silver-seed gourd	carcpiB0405
CSPI03G18350	Cucumber (Chinese Long) v3	cpicucB193
CSPI03G18350	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G18350	Watermelon (97103) v2	cpiwmbB203
CSPI03G18350	Watermelon (97103) v2	cpiwmbB221
CSPI03G18350	Wax gourd	cpiwgoB283
CSPI03G18350	Wax gourd	cpiwgoB311
CSPI03G18350	Wild cucumber (PI 183967)	cpicpiB144