CSPI03G17690 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G17690
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 13266941 .. 13267464 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTGACCTCCACAATGATGCTGCTGCCACAATCACTGCCATTAAAGCCTTGGTCAACCAGTATCTTCGATGCTGCCTTCCACCTCCGTGCTTCCTTTTTCCGTCGCTGGCATCTTTTTCTTTGCCATCCTGAACTGCTCCATCACCGGTTGTCCACCCAGTCACCGTCCCCTTCCTGCCGATCAGTCTTCAACAGTCACGGCTCTCCATGGCAAGGTTGTCTTCCAGTCGACTTCTCTCTCCGCAGACACCACCAGCCACACCTCCTTCATTCCGATCAGATCGAAAAACATATTTCATTCGTCTACGGGCAATTATTTCCAGGTGAAAAGTGGTGAGTACTCTACCCACCACAAAGAAAGGTAAATCTACTTGTGATGGTCGATGGTTCAATAACAACCGGCAAATCTCCAAATGAATTTTCAGCAACAAACTGCTCCCAGGGCAGCTCTAGGTGCTTCCAGCCTTTCACAAACTCAACAAATTATGCCACGCCTTCAGTCTTACCGATGAATTCCGACAAC

mRNA sequence

ATGATGCTGCTGCCACAATCACTGCCATTAAAGCCTTGGTCAACCAGTATCTTCGATGCTGCCTTCCACCTCCGTGCTTCCTTTTTCCGTCGCTGGCATCTTTTTCTTTGCCATCCTGAACTGCTCCATCACCGGTTGTCCACCCAGTCACCGTCCCCTTCCTGCCGATCAGTCTTCAACAGTCACGGCTCTCCATGGCAAGGTTGTCTTCCAGTCGACTTCTCTCTCCGCAGACACCACCAGCCACACCTCCTTCATTCCGATCAGATCGAAAAACATATTTCATTCGTCTACGGGCAATTATTTCCAGGTGAAAAGTGGTGA

Coding sequence (CDS)

ATGATGCTGCTGCCACAATCACTGCCATTAAAGCCTTGGTCAACCAGTATCTTCGATGCTGCCTTCCACCTCCGTGCTTCCTTTTTCCGTCGCTGGCATCTTTTTCTTTGCCATCCTGAACTGCTCCATCACCGGTTGTCCACCCAGTCACCGTCCCCTTCCTGCCGATCAGTCTTCAACAGTCACGGCTCTCCATGGCAAGGTTGTCTTCCAGTCGACTTCTCTCTCCGCAGACACCACCAGCCACACCTCCTTCATTCCGATCAGATCGAAAAACATATTTCATTCGTCTACGGGCAATTATTTCCAGGTGAAAAGTGGTGA
Homology
[Close]
BLAST of CSPI03G17690 vs. TrEMBL
Match: A0A0A0LA14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187265 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 6.8e-60
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MMLLPQSLPLKPWSTSIFDAAFHLRASFFRRWHLFLCHPELLHHRLSTQSPSPSCRSVFN 60
           MMLLPQSLPLKPWSTSIFDAAFHLRASFFRRWHLFLCHPELLHHRLSTQSPSPSCRSVFN
Sbjct: 1   MMLLPQSLPLKPWSTSIFDAAFHLRASFFRRWHLFLCHPELLHHRLSTQSPSPSCRSVFN 60

Query: 61  SHGSPWQGCLPVDFSLRRHHQPHLLHSDQIEKHISFVYGQLFPGEKW 108
           SHGSPWQGCLPVDFSLRRHHQPHLLHSDQIEKHISFVYGQLFPGEKW
Sbjct: 61  SHGSPWQGCLPVDFSLRRHHQPHLLHSDQIEKHISFVYGQLFPGEKW 107

[Close]
BLAST of CSPI03G17690 vs. NCBI nr
Match: gi|700202319|gb|KGN57452.1| (hypothetical protein Csa_3G187265 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 9.8e-60
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MMLLPQSLPLKPWSTSIFDAAFHLRASFFRRWHLFLCHPELLHHRLSTQSPSPSCRSVFN 60
           MMLLPQSLPLKPWSTSIFDAAFHLRASFFRRWHLFLCHPELLHHRLSTQSPSPSCRSVFN
Sbjct: 1   MMLLPQSLPLKPWSTSIFDAAFHLRASFFRRWHLFLCHPELLHHRLSTQSPSPSCRSVFN 60

Query: 61  SHGSPWQGCLPVDFSLRRHHQPHLLHSDQIEKHISFVYGQLFPGEKW 108
           SHGSPWQGCLPVDFSLRRHHQPHLLHSDQIEKHISFVYGQLFPGEKW
Sbjct: 61  SHGSPWQGCLPVDFSLRRHHQPHLLHSDQIEKHISFVYGQLFPGEKW 107

The following BLAST results are available for this feature:
BLAST of CSPI03G17690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G17690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA14_CUCSA6.8e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187265 PE=4 SV=1[more]
BLAST of CSPI03G17690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G17690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202319|gb|KGN57452.1|9.8e-60100.00hypothetical protein Csa_3G187265 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G17690.1CSPI03G17690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G17690Wax gourdcpiwgoB283
CSPI03G17690Cucumber (Gy14) v1cgycpiB133
CSPI03G17690Cucurbita maxima (Rimu)cmacpiB247
CSPI03G17690Cucurbita maxima (Rimu)cmacpiB461
CSPI03G17690Cucurbita moschata (Rifu)cmocpiB235
CSPI03G17690Cucurbita moschata (Rifu)cmocpiB449
CSPI03G17690Cucumber (Chinese Long) v2cpicuB120
CSPI03G17690Melon (DHL92) v3.5.1cpimeB241
CSPI03G17690Watermelon (Charleston Gray)cpiwcgB237
CSPI03G17690Watermelon (97103) v1cpiwmB242
CSPI03G17690Cucurbita pepo (Zucchini)cpecpiB551
CSPI03G17690Cucurbita pepo (Zucchini)cpecpiB605
CSPI03G17690Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G17690Melon (DHL92) v3.6.1cpimedB239
CSPI03G17690Cucumber (Gy14) v2cgybcpiB110
CSPI03G17690Silver-seed gourdcarcpiB0203
CSPI03G17690Silver-seed gourdcarcpiB0799
CSPI03G17690Cucumber (Chinese Long) v3cpicucB144
CSPI03G17690Watermelon (97103) v2cpiwmbB221