CSPI03G17660 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G17660
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 13240395 .. 13241017 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCGTTTTCCGCTTTACCTCGACACAGCTTCGCCTCGACCTCAGCGTTGTCATCGGTACGCCTCTTTCTCGCCGATCTCACCTTTGCTGCCTCGCCGCCGTGGCTTCCGTCTTCAGCGTCCGGGTTCTAATCTTCGAGTGCAAGTCGTCTAATCTGATAGAAGAGTGTTTTTTCTATTTCCAGTTTTTGTATGTTGAACTCGGTAAAGGAAACCATTGGTGTCTTATCTTTCATTTTTTATTTAAAAGTACAATTTCTATGAAGATTTTGTTGGGTGAATGTAAGTGTTGGACTTGGAATTCAGTGGATATTTAAACTAGTGTGCTAAAACATGTTTATATATGTGTTACAGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGGGTTTTCTTCTGCTAATGAGGTATCCTCAAGCAAACACGTGGAAGATGCCAGCAAAAGCAAGCAGAAGGTATGTGTGTTTGTGGTGGAAGATGGCTTTTCCAAGATTTGTTCAGTCTGTCGACTTTCCATTTGCTTCAATATGAAAAATATTATATTTCGTCGTTTTAATTTAGAATTTGGGTTACTATTTTCATCGTGTTACAGGCTATCTTGAAG

mRNA sequence

ATGACGTCGTTTTCCGCTTTACCTCGACACAGCTTCGCCTCGACCTCAGCGTTGTCATCGGTACGCCTCTTTCTCGCCGATCTCACCTTTGCTGCCTCGCCGCCGTGGCTTCCGTCTTCAGCGTCCGGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGGGTTTTCTTCTGCTAATGAGGTATCCTCAAGCAAACACGTGGAAGATGCCAGCAAAAGCAAGCAGAAGAATTTGGGTTACTATTTTCATCGTGTTACAGGCTATCTTGAAG

Coding sequence (CDS)

ATGACGTCGTTTTCCGCTTTACCTCGACACAGCTTCGCCTCGACCTCAGCGTTGTCATCGGTACGCCTCTTTCTCGCCGATCTCACCTTTGCTGCCTCGCCGCCGTGGCTTCCGTCTTCAGCGTCCGGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGGGTTTTCTTCTGCTAATGAGGTATCCTCAAGCAAACACGTGGAAGATGCCAGCAAAAGCAAGCAGAAGAATTTGGGTTACTATTTTCATCGTGTTACAGGCTATCTTGAAG
Homology
[Close]
BLAST of CSPI03G17660 vs. TrEMBL
Match: A0A0A0L8Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187240 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MTSFSALPRHSFASTSALSSVRLFLADLTFAASPPWLPSSASGLLKLMAPSRKSRSVNKG 60
          MTSFSALPRHSFASTSALSSVRLFLADLTFAASPPWLPSSASGLLKLMAPSRKSRSVNKG
Sbjct: 1  MTSFSALPRHSFASTSALSSVRLFLADLTFAASPPWLPSSASGLLKLMAPSRKSRSVNKG 60

Query: 61 FLLLMRYPQANTWKMPAKASR 82
          FLLLMRYPQANTWKMPAKASR
Sbjct: 61 FLLLMRYPQANTWKMPAKASR 81

[Close]
BLAST of CSPI03G17660 vs. NCBI nr
Match: gi|700202316|gb|KGN57449.1| (hypothetical protein Csa_3G187240 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MTSFSALPRHSFASTSALSSVRLFLADLTFAASPPWLPSSASGLLKLMAPSRKSRSVNKG 60
          MTSFSALPRHSFASTSALSSVRLFLADLTFAASPPWLPSSASGLLKLMAPSRKSRSVNKG
Sbjct: 1  MTSFSALPRHSFASTSALSSVRLFLADLTFAASPPWLPSSASGLLKLMAPSRKSRSVNKG 60

Query: 61 FLLLMRYPQANTWKMPAKASR 82
          FLLLMRYPQANTWKMPAKASR
Sbjct: 61 FLLLMRYPQANTWKMPAKASR 81

The following BLAST results are available for this feature:
BLAST of CSPI03G17660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G17660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8Y7_CUCSA2.3e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187240 PE=4 SV=1[more]
BLAST of CSPI03G17660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G17660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202316|gb|KGN57449.1|3.3e-35100.00hypothetical protein Csa_3G187240 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G17660.1CSPI03G17660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G17660Cucumber (Gy14) v1cgycpiB133
CSPI03G17660Cucurbita maxima (Rimu)cmacpiB247
CSPI03G17660Cucurbita maxima (Rimu)cmacpiB461
CSPI03G17660Cucurbita moschata (Rifu)cmocpiB235
CSPI03G17660Cucurbita moschata (Rifu)cmocpiB449
CSPI03G17660Cucumber (Chinese Long) v2cpicuB120
CSPI03G17660Melon (DHL92) v3.5.1cpimeB235
CSPI03G17660Melon (DHL92) v3.5.1cpimeB241
CSPI03G17660Watermelon (Charleston Gray)cpiwcgB237
CSPI03G17660Watermelon (97103) v1cpiwmB242
CSPI03G17660Cucurbita pepo (Zucchini)cpecpiB551
CSPI03G17660Cucurbita pepo (Zucchini)cpecpiB605
CSPI03G17660Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G17660Melon (DHL92) v3.6.1cpimedB237
CSPI03G17660Melon (DHL92) v3.6.1cpimedB239
CSPI03G17660Cucumber (Gy14) v2cgybcpiB110
CSPI03G17660Silver-seed gourdcarcpiB0203
CSPI03G17660Silver-seed gourdcarcpiB0799
CSPI03G17660Cucumber (Chinese Long) v3cpicucB144
CSPI03G17660Watermelon (97103) v2cpiwmbB221
CSPI03G17660Wax gourdcpiwgoB283