CSPI03G17620 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G17620
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	Chr3 : 13211771 .. 13212678 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGGTTATATACCCCGCTGCCGATTCCACAATCAATCTGGGAAGATCTCTCAATTGACTTTGTACTCGGACTCCCCAAGACTCAAAGAAACCATGATTCAGTCATGGTGGTTGTTGACCGATTCAGCAAAATGGCTCACTTCATCGCTTGCAAGAGAACGAATGATGCTGTATACATAGCTAACCTATTCTTCAAGGAGATCACCTGATTACATGGAGTACCTAAAACCATCGTCTCCGATAGGGATGTTAAGTTCCTAAGCCATTTCTGGAAGACACTGTGGAGAAAGTTTGATACAACGCTGAAGTATAGCACAATAGCTCACCCTCAGACCGACGGACAGACTGAGGTAACAAACAGAACACTGGGTAACTTGATACGCTGCCTCAGTGGCTCTAAACCTAAACAGTGGGATTTGTCCCACGCACAAGCAGAGTTTGCCTTCAACAACATGAAGAACCGATCGACTGACAAATGCCCCTTTGAAGTCGTGTACACTAGACGACCGAGGTTGACATTTGACCTCGCATCCCTCCCTGTTACTGTAGAAAGTCACAAAGAGGCCGAAACCATGGCAGAGGATATCGAGAAACTACACAAGGAAGTTCATGACCACCTTGTCCAATCCACTAATTCCTATAAGAAAGCAGCAGACAAAAAGAGGAGGCAAACTGTTTTCTCCAAAGGGGACTTAGTAATGGTACACCTAAGAAAAAACAGATTCCCCACTGGAACGTACAACAAACTGAAGGATAGACAGATCGGCCCATTTCGCATTACAGAAAAATATGGAGATAATGCTTTTAAGGTCGAACTTCCCCCAGACATGAACATCCATTCGGTATTCAATATTGCAGACTTGAAACCCTATCATGCCCCAGACGACTTCCAACTTGCTGACTAA

mRNA sequence

ATGCAGGGTTATATACCCCGCTGCCGATTCCACAATCAATCTGGGAAGATCTCTCAATTGACTTTGTACTCGGACTCCCCAAGACTCAAAGAAACCATGATTCAGTCATGGTGGTTGTTGACCGATTCAGCAAAATGGCTCACTTCATCGCTTGCAAGAGAACGAATGATGCTGGATGTTAAGTTCCTAAGCCATTTCTGGAAGACACTGTGGAGAAAGTTTGATACAACGCTGAAGTATAGCACAATAGCTCACCCTCAGACCGACGGACAGACTGAGGTAACAAACAGAACACTGGGTAACTTGATACGCTGCCTCAGTGGCTCTAAACCTAAACAGTGGGATTTGTCCCACGCACAAGCAGAGTTTGCCTTCAACAACATGAAGAACCGATCGACTGACAAATGCCCCTTTGAAGTCGTGTACACTAGACGACCGAGGTTGACATTTGACCTCGCATCCCTCCCTGTTACTGTAGAAAGTCACAAAGAGGCCGAAACCATGGCAGAGGATATCGAGAAACTACACAAGGAAGTTCATGACCACCTTGTCCAATCCACTAATTCCTATAAGAAAGCAGCAGACAAAAAGAGGAGGCAAACTGTTTTCTCCAAAGGGGACTTAGTAATGGTACACCTAAGAAAAAACAGATTCCCCACTGGAACGTACAACAAACTGAAGGATAGACAGATCGGCCCATTTCGCATTACAGAAAAATATGGAGATAATGCTTTTAAGGTCGAACTTCCCCCAGACATGAACATCCATTCGGTATTCAATATTGCAGACTTGAAACCCTATCATGCCCCAGACGACTTCCAACTTGCTGACTAA

Coding sequence (CDS)

ATGCAGGGTTATATACCCCGCTGCCGATTCCACAATCAATCTGGGAAGATCTCTCAATTGACTTTGTACTCGGACTCCCCAAGACTCAAAGAAACCATGATTCAGTCATGGTGGTTGTTGACCGATTCAGCAAAATGGCTCACTTCATCGCTTGCAAGAGAACGAATGATGCTGGATGTTAAGTTCCTAAGCCATTTCTGGAAGACACTGTGGAGAAAGTTTGATACAACGCTGAAGTATAGCACAATAGCTCACCCTCAGACCGACGGACAGACTGAGGTAACAAACAGAACACTGGGTAACTTGATACGCTGCCTCAGTGGCTCTAAACCTAAACAGTGGGATTTGTCCCACGCACAAGCAGAGTTTGCCTTCAACAACATGAAGAACCGATCGACTGACAAATGCCCCTTTGAAGTCGTGTACACTAGACGACCGAGGTTGACATTTGACCTCGCATCCCTCCCTGTTACTGTAGAAAGTCACAAAGAGGCCGAAACCATGGCAGAGGATATCGAGAAACTACACAAGGAAGTTCATGACCACCTTGTCCAATCCACTAATTCCTATAAGAAAGCAGCAGACAAAAAGAGGAGGCAAACTGTTTTCTCCAAAGGGGACTTAGTAATGGTACACCTAAGAAAAAACAGATTCCCCACTGGAACGTACAACAAACTGAAGGATAGACAGATCGGCCCATTTCGCATTACAGAAAAATATGGAGATAATGCTTTTAAGGTCGAACTTCCCCCAGACATGAACATCCATTCGGTATTCAATATTGCAGACTTGAAACCCTATCATGCCCCAGACGACTTCCAACTTGCTGACTAA

Homology

[Close]

BLAST of CSPI03G17620 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-20
Identity = 70/218 (32.11%), Postives = 108/218 (49.54%), Query Frame = 1


Query: 62   FLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSHAQA 121
            F S  WK    K++  +K+S    PQTDGQTE TN+T+  L+RC+  + P  W    +  
Sbjct: 1055 FTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLV 1114

Query: 122  EFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKEVHD 181
            + ++NN  + +T   PFE+V+   P     L+ L +   S K  E   E I+ + + V +
Sbjct: 1115 QQSYNNAIHSATQMTPFEIVHRYSPA----LSPLELPSFSDKTDENSQETIQ-VFQTVKE 1174

Query: 182  HLVQSTNSYKKAADKKRRQ-TVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITEKY 241
            HL  +    KK  D K ++   F  GDLVMV   K  F     NKL     GPF + +K 
Sbjct: 1175 HLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAGPFYVLQKS 1234

Query: 242  GDNAFKVELPPDMN--IHSVFNIADLKPYHAPDDFQLA 277
            G N ++++LP  +     S F+++ L+ Y    +   A
Sbjct: 1235 GPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYA 1266

[Close]

BLAST of CSPI03G17620 vs. Swiss-Prot
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-20
Identity = 70/218 (32.11%), Postives = 108/218 (49.54%), Query Frame = 1


Query: 62   FLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSHAQA 121
            F S  WK    K++  +K+S    PQTDGQTE TN+T+  L+RC+  + P  W    +  
Sbjct: 1055 FTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLV 1114

Query: 122  EFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKEVHD 181
            + ++NN  + +T   PFE+V+   P     L+ L +   S K  E   E I+ + + V +
Sbjct: 1115 QQSYNNAIHSATQMTPFEIVHRYSPA----LSPLELPSFSDKTDENSQETIQ-VFQTVKE 1174

Query: 182  HLVQSTNSYKKAADKKRRQ-TVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITEKY 241
            HL  +    KK  D K ++   F  GDLVMV   K  F     NKL     GPF + +K 
Sbjct: 1175 HLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAGPFYVLQKS 1234

Query: 242  GDNAFKVELPPDMN--IHSVFNIADLKPYHAPDDFQLA 277
            G N ++++LP  +     S F+++ L+ Y    +   A
Sbjct: 1235 GPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYA 1266

[Close]

BLAST of CSPI03G17620 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-20
Identity = 70/218 (32.11%), Postives = 108/218 (49.54%), Query Frame = 1


Query: 62   FLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSHAQA 121
            F S  WK    K++  +K+S    PQTDGQTE TN+T+  L+RC+  + P  W    +  
Sbjct: 1055 FTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLV 1114

Query: 122  EFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKEVHD 181
            + ++NN  + +T   PFE+V+   P     L+ L +   S K  E   E I+ + + V +
Sbjct: 1115 QQSYNNAIHSATQMTPFEIVHRYSPA----LSPLELPSFSDKTDENSQETIQ-VFQTVKE 1174

Query: 182  HLVQSTNSYKKAADKKRRQ-TVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITEKY 241
            HL  +    KK  D K ++   F  GDLVMV   K  F     NKL     GPF + +K 
Sbjct: 1175 HLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAGPFYVLQKS 1234

Query: 242  GDNAFKVELPPDMN--IHSVFNIADLKPYHAPDDFQLA 277
            G N ++++LP  +     S F+++ L+ Y    +   A
Sbjct: 1235 GPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYA 1266

[Close]

BLAST of CSPI03G17620 vs. Swiss-Prot
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-20
Identity = 70/218 (32.11%), Postives = 108/218 (49.54%), Query Frame = 1


Query: 62   FLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSHAQA 121
            F S  WK    K++  +K+S    PQTDGQTE TN+T+  L+RC+  + P  W    +  
Sbjct: 1055 FTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLV 1114

Query: 122  EFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKEVHD 181
            + ++NN  + +T   PFE+V+   P     L+ L +   S K  E   E I+ + + V +
Sbjct: 1115 QQSYNNAIHSATQMTPFEIVHRYSPA----LSPLELPSFSDKTDENSQETIQ-VFQTVKE 1174

Query: 182  HLVQSTNSYKKAADKKRRQ-TVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITEKY 241
            HL  +    KK  D K ++   F  GDLVMV   K  F     NKL     GPF + +K 
Sbjct: 1175 HLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAGPFYVLQKS 1234

Query: 242  GDNAFKVELPPDMN--IHSVFNIADLKPYHAPDDFQLA 277
            G N ++++LP  +     S F+++ L+ Y    +   A
Sbjct: 1235 GPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYA 1266

[Close]

BLAST of CSPI03G17620 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-20
Identity = 70/218 (32.11%), Postives = 108/218 (49.54%), Query Frame = 1


Query: 62   FLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSHAQA 121
            F S  WK    K++  +K+S    PQTDGQTE TN+T+  L+RC+  + P  W    +  
Sbjct: 1055 FTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLV 1114

Query: 122  EFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKEVHD 181
            + ++NN  + +T   PFE+V+   P     L+ L +   S K  E   E I+ + + V +
Sbjct: 1115 QQSYNNAIHSATQMTPFEIVHRYSPA----LSPLELPSFSDKTDENSQETIQ-VFQTVKE 1174

Query: 182  HLVQSTNSYKKAADKKRRQ-TVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITEKY 241
            HL  +    KK  D K ++   F  GDLVMV   K  F     NKL     GPF + +K 
Sbjct: 1175 HLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGF-LHKSNKLAPSFAGPFYVLQKS 1234

Query: 242  GDNAFKVELPPDMN--IHSVFNIADLKPYHAPDDFQLA 277
            G N ++++LP  +     S F+++ L+ Y    +   A
Sbjct: 1235 GPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYA 1266

[Close]

BLAST of CSPI03G17620 vs. TrEMBL
Match: A0A061FJI8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035725 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.4e-58
Identity = 111/213 (52.11%), Postives = 141/213 (66.20%), Query Frame = 1


Query: 59  DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
           DVKF+ HFW+TLWRKF T LKYS+  HPQTDGQTEV NR+LGN++RCL  + PK WDL  
Sbjct: 204 DVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVI 263

Query: 119 AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
            QAEFA+NN  NRS  K PFEV Y  +P+   DL  LP       E E  A+ I K+H+E
Sbjct: 264 PQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLVPLPQEARVSNEGELFADHIRKIHEE 323

Query: 179 VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
           V   L  S   Y   A++ RR+  F +GD V+VHLR+ RFP GTY+KLK R+ GP ++ +
Sbjct: 324 VKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLK 383

Query: 239 KYGDNAFKVELPPDMNIHSVFNIADLKPYHAPD 272
           K   NA+ +ELPP++ I  +FNI DL P+   D
Sbjct: 384 KISSNAYLIELPPELQISHIFNILDLYPFDGCD 416

[Close]

BLAST of CSPI03G17620 vs. TrEMBL
Match: A0A061DJQ1_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_001702 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.8e-57
Identity = 110/213 (51.64%), Postives = 140/213 (65.73%), Query Frame = 1


Query: 59  DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
           DVKF+ HFW+TLWRKF T LKYS+  HPQTDGQTEV NR+LGN++RCL  + PK WDL  
Sbjct: 425 DVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVI 484

Query: 119 AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
            QAEFA+NN  NRS  K PFEV Y  +P+   DL  LP       E E  A  I K+H+E
Sbjct: 485 PQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLVPLPQEARVSNEGELFAYHIRKIHEE 544

Query: 179 VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
           V   L  S   Y   A++ RR+  F +GD V+VHLR+ RFP GTY+KLK R+ GP ++ +
Sbjct: 545 VKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVIK 604

Query: 239 KYGDNAFKVELPPDMNIHSVFNIADLKPYHAPD 272
           K   NA+ +ELPP++ I  +FN+ DL P+   D
Sbjct: 605 KISSNAYLIELPPELQISPIFNVLDLYPFDGCD 637

[Close]

BLAST of CSPI03G17620 vs. TrEMBL
Match: A0A061FQC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035549 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.7e-57
Identity = 109/213 (51.17%), Postives = 140/213 (65.73%), Query Frame = 1


Query: 59   DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
            DVKF+ HFW+TLWRKF T LKYS+  HPQTDGQTEV NR+LGN++RCL  + PK WDL  
Sbjct: 1097 DVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVI 1156

Query: 119  AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
             QAEFA+NN  NRS  K PFE  Y  +P+   DL  LP       E E  A+ I K+H+E
Sbjct: 1157 PQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEPRVSNEGELFADHIRKIHEE 1216

Query: 179  VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
            V   L  S   Y   A++ RR+  F +GD V+VHLR+ RFP GTY+KLK R+ GP ++ +
Sbjct: 1217 VKTALKASNAQYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLK 1276

Query: 239  KYGDNAFKVELPPDMNIHSVFNIADLKPYHAPD 272
            K   NA+ +ELPP++ I  +FN+ DL P+   D
Sbjct: 1277 KISSNAYLIELPPELQISPIFNVLDLYPFDGCD 1309

[Close]

BLAST of CSPI03G17620 vs. TrEMBL
Match: M5WQR6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015715mg PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.4e-56
Identity = 111/209 (53.11%), Postives = 143/209 (68.42%), Query Frame = 1


Query: 59   DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
            DVKF+S+FWKTLW+ F TTLK+S+  HPQTDGQTEV NR+LG+L+RCL G KP  WDL  
Sbjct: 1126 DVKFVSYFWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKPGNWDLLL 1185

Query: 119  AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
              AEFA+NN  NRST K PFEVV+   PR   DL +LPV   +   A + AE I +LH +
Sbjct: 1186 PVAEFAYNNSVNRSTGKSPFEVVHGFSPRSPVDLVALPVAARTSDSATSFAEHIRQLHDD 1245

Query: 179  VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
            V   +   T++YK AA+  RRQ  F +GD VMV +   RFP  ++ KL  R +GP+RI +
Sbjct: 1246 VRRQISMHTDTYKLAANAHRRQQEFREGDFVMVRVCPERFPKHSFKKLHARSMGPYRIIK 1305

Query: 239  KYGDNAFKVELPPDMNIHSVFNIADLKPY 268
            K G NA+ +ELP DM+I  +FN++DL PY
Sbjct: 1306 KLGSNAYLIELPADMHISPIFNVSDLSPY 1334

[Close]

BLAST of CSPI03G17620 vs. TrEMBL
Match: A0A061DRY4_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_005025 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.4e-56
Identity = 108/212 (50.94%), Postives = 140/212 (66.04%), Query Frame = 1


Query: 60   VKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSHA 119
            VKF+ +FW+TLWRKF T LKYS+  HPQTDGQTEV NR+LGN++RCL  + PK WDL   
Sbjct: 1158 VKFMGYFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVIP 1217

Query: 120  QAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKEV 179
            QAEFA+NN  NRS  K PFE  Y  +P+   DL  LP       E E  A+ I K+H+EV
Sbjct: 1218 QAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEARVSNEGELFADQIRKIHEEV 1277

Query: 180  HDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITEK 239
               L  S   Y   A++ RR+  F +GD V+VHLR+ RFP GTY+KLK R+ GP ++ +K
Sbjct: 1278 KAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLKK 1337

Query: 240  YGDNAFKVELPPDMNIHSVFNIADLKPYHAPD 272
               NA+ +ELPP++ I+ +FNI DL P+   D
Sbjct: 1338 ISSNAYLIELPPELQINPIFNILDLYPFDGCD 1369

[Close]

BLAST of CSPI03G17620 vs. NCBI nr
Match: gi|590601299|ref|XP_007019612.1| (Uncharacterized protein TCM_035725 [Theobroma cacao])

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 111/213 (52.11%), Postives = 141/213 (66.20%), Query Frame = 1


Query: 59  DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
           DVKF+ HFW+TLWRKF T LKYS+  HPQTDGQTEV NR+LGN++RCL  + PK WDL  
Sbjct: 204 DVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVI 263

Query: 119 AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
            QAEFA+NN  NRS  K PFEV Y  +P+   DL  LP       E E  A+ I K+H+E
Sbjct: 264 PQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLVPLPQEARVSNEGELFADHIRKIHEE 323

Query: 179 VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
           V   L  S   Y   A++ RR+  F +GD V+VHLR+ RFP GTY+KLK R+ GP ++ +
Sbjct: 324 VKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLK 383

Query: 239 KYGDNAFKVELPPDMNIHSVFNIADLKPYHAPD 272
           K   NA+ +ELPP++ I  +FNI DL P+   D
Sbjct: 384 KISSNAYLIELPPELQISHIFNILDLYPFDGCD 416

[Close]

BLAST of CSPI03G17620 vs. NCBI nr
Match: gi|685323672|ref|XP_009151506.1| (PREDICTED: serine/threonine-protein kinase TIO-like, partial [Brassica rapa])

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 118/211 (55.92%), Postives = 140/211 (66.35%), Query Frame = 1


Query: 59   DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
            D KFLSHFW TLWR F T+LK S+ AHPQTDGQTEVTNRTLGN+IR + G KPKQWDL+ 
Sbjct: 856  DTKFLSHFWITLWRMFGTSLKRSSTAHPQTDGQTEVTNRTLGNMIRSVCGDKPKQWDLAL 915

Query: 119  AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
             Q EFA+N+  + +T K PF +VY   P+   DL  LP        AE MAEDI      
Sbjct: 916  PQVEFAYNSAVHSATGKSPFSLVYCSIPKHVVDLVKLPKAPGVSISAEAMAEDILATRDA 975

Query: 179  VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
            V   L  +    K+AADK+RR  VF +GD VMV LRK RFP GTY KL+ R+ GPF+I  
Sbjct: 976  VRAKLEATGQKNKEAADKRRRLKVFKEGDEVMVFLRKERFPVGTYRKLQPRKYGPFKILR 1035

Query: 239  KYGDNAFKVELPPDMNIHSVFNIADLKPYHA 270
            K  DNA+ V LP DMNI + FN+AD+  YHA
Sbjct: 1036 KLNDNAYVVALPEDMNISNTFNVADIYEYHA 1066

[Close]

BLAST of CSPI03G17620 vs. NCBI nr
Match: gi|590709906|ref|XP_007048683.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 110/213 (51.64%), Postives = 140/213 (65.73%), Query Frame = 1


Query: 59  DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
           DVKF+ HFW+TLWRKF T LKYS+  HPQTDGQTEV NR+LGN++RCL  + PK WDL  
Sbjct: 425 DVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVI 484

Query: 119 AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
            QAEFA+NN  NRS  K PFEV Y  +P+   DL  LP       E E  A  I K+H+E
Sbjct: 485 PQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLVPLPQEARVSNEGELFAYHIRKIHEE 544

Query: 179 VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
           V   L  S   Y   A++ RR+  F +GD V+VHLR+ RFP GTY+KLK R+ GP ++ +
Sbjct: 545 VKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVIK 604

Query: 239 KYGDNAFKVELPPDMNIHSVFNIADLKPYHAPD 272
           K   NA+ +ELPP++ I  +FN+ DL P+   D
Sbjct: 605 KISSNAYLIELPPELQISPIFNVLDLYPFDGCD 637

[Close]

BLAST of CSPI03G17620 vs. NCBI nr
Match: gi|590600507|ref|XP_007019474.1| (Uncharacterized protein TCM_035549 [Theobroma cacao])

HSP 1 Score: 229.9 bits (585), Expect = 5.3e-57
Identity = 109/213 (51.17%), Postives = 140/213 (65.73%), Query Frame = 1


Query: 59   DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
            DVKF+ HFW+TLWRKF T LKYS+  HPQTDGQTEV NR+LGN++RCL  + PK WDL  
Sbjct: 1097 DVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVI 1156

Query: 119  AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
             QAEFA+NN  NRS  K PFE  Y  +P+   DL  LP       E E  A+ I K+H+E
Sbjct: 1157 PQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEPRVSNEGELFADHIRKIHEE 1216

Query: 179  VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
            V   L  S   Y   A++ RR+  F +GD V+VHLR+ RFP GTY+KLK R+ GP ++ +
Sbjct: 1217 VKTALKASNAQYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLK 1276

Query: 239  KYGDNAFKVELPPDMNIHSVFNIADLKPYHAPD 272
            K   NA+ +ELPP++ I  +FN+ DL P+   D
Sbjct: 1277 KISSNAYLIELPPELQISPIFNVLDLYPFDGCD 1309

[Close]

BLAST of CSPI03G17620 vs. NCBI nr
Match: gi|595840170|ref|XP_007207981.1| (hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica])

HSP 1 Score: 228.0 bits (580), Expect = 2.0e-56
Identity = 111/209 (53.11%), Postives = 143/209 (68.42%), Query Frame = 1


Query: 59   DVKFLSHFWKTLWRKFDTTLKYSTIAHPQTDGQTEVTNRTLGNLIRCLSGSKPKQWDLSH 118
            DVKF+S+FWKTLW+ F TTLK+S+  HPQTDGQTEV NR+LG+L+RCL G KP  WDL  
Sbjct: 1126 DVKFVSYFWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKPGNWDLLL 1185

Query: 119  AQAEFAFNNMKNRSTDKCPFEVVYTRRPRLTFDLASLPVTVESHKEAETMAEDIEKLHKE 178
              AEFA+NN  NRST K PFEVV+   PR   DL +LPV   +   A + AE I +LH +
Sbjct: 1186 PVAEFAYNNSVNRSTGKSPFEVVHGFSPRSPVDLVALPVAARTSDSATSFAEHIRQLHDD 1245

Query: 179  VHDHLVQSTNSYKKAADKKRRQTVFSKGDLVMVHLRKNRFPTGTYNKLKDRQIGPFRITE 238
            V   +   T++YK AA+  RRQ  F +GD VMV +   RFP  ++ KL  R +GP+RI +
Sbjct: 1246 VRRQISMHTDTYKLAANAHRRQQEFREGDFVMVRVCPERFPKHSFKKLHARSMGPYRIIK 1305

Query: 239  KYGDNAFKVELPPDMNIHSVFNIADLKPY 268
            K G NA+ +ELP DM+I  +FN++DL PY
Sbjct: 1306 KLGSNAYLIELPADMHISPIFNVSDLSPY 1334

The following BLAST results are available for this feature:

BLAST of CSPI03G17620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF21_SCHPO	1.8e-20	32.11	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF29_SCHPO	1.8e-20	32.11	Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF28_SCHPO	1.8e-20	32.11	Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF27_SCHPO	1.8e-20	32.11	Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF26_SCHPO	1.8e-20	32.11	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI03G17620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FJI8_THECC	7.4e-58	52.11	Uncharacterized protein OS=Theobroma cacao GN=TCM_035725 PE=4 SV=1	[more]
A0A061DJQ1_THECC	2.8e-57	51.64	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_001702 PE=4 SV...	[more]
A0A061FQC4_THECC	3.7e-57	51.17	Uncharacterized protein OS=Theobroma cacao GN=TCM_035549 PE=4 SV=1	[more]
M5WQR6_PRUPE	1.4e-56	53.11	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015715mg PE=4 S...	[more]
A0A061DRY4_THECC	2.4e-56	50.94	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_005025 PE=4 SV...	[more]

BLAST of CSPI03G17620 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G17620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590601299\|ref\|XP_007019612.1\|	1.1e-57	52.11	Uncharacterized protein TCM_035725 [Theobroma cacao]	[more]
gi\|685323672\|ref\|XP_009151506.1\|	2.4e-57	55.92	PREDICTED: serine/threonine-protein kinase TIO-like, partial [Brassica rapa]	[more]
gi\|590709906\|ref\|XP_007048683.1\|	4.0e-57	51.64	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590600507\|ref\|XP_007019474.1\|	5.3e-57	51.17	Uncharacterized protein TCM_035549 [Theobroma cacao]	[more]
gi\|595840170\|ref\|XP_007207981.1\|	2.0e-56	53.11	hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G17620.1	CSPI03G17620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 61..148 score: 3.4
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 61..139 score: 7.21
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 59..267 score: 3.0
None	No IPR available	PANTHER	PTHR24559:SF174	SUBFAMILY NOT NAMED	coord: 59..267 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G17620	Melon (DHL92) v3.6.1	cpimedB237
CSPI03G17620	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G17620	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G17620	Silver-seed gourd	carcpiB0203
CSPI03G17620	Silver-seed gourd	carcpiB0799
CSPI03G17620	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G17620	Watermelon (97103) v2	cpiwmbB221
CSPI03G17620	Wax gourd	cpiwgoB283
CSPI03G17620	Cucumber (Gy14) v1	cgycpiB133
CSPI03G17620	Cucurbita maxima (Rimu)	cmacpiB247
CSPI03G17620	Cucurbita maxima (Rimu)	cmacpiB461
CSPI03G17620	Cucurbita moschata (Rifu)	cmocpiB235
CSPI03G17620	Cucurbita moschata (Rifu)	cmocpiB449
CSPI03G17620	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G17620	Melon (DHL92) v3.5.1	cpimeB235
CSPI03G17620	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G17620	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G17620	Watermelon (97103) v1	cpiwmB242
CSPI03G17620	Cucurbita pepo (Zucchini)	cpecpiB551
CSPI03G17620	Cucurbita pepo (Zucchini)	cpecpiB605
CSPI03G17620	Bottle gourd (USVL1VR-Ls)	cpilsiB209