CSPI03G17540 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G17540
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Chr3 : 13152873 .. 13154040 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTCCTGAAGCTCCATATTGGGAAGAGGCTGTGAATACTGAAGTTAAGTCCATTATGCATAACCATATTTGGGAACTAATTGATCTTCCATTAGGAAATAATCCACTTGGTTGTAAATGGATTTTCAAATGAAAAATAAAGACCAGTAGGTCAATAGATAAATATAAGGCAAGACGTGTCGCCAAAGGTTACAAGCAACAAGAAGAACTTGACTATTTTGATACATACTCACCAATTACTCGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGATATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATTCAATCACCTGAAGGGTTTGTTTTTTTCGGTCAAGAAAAGAAAGTTTGCAAATTAATTAGGTCTCTTTATGGACTAAAACAAGCACCAAAACAATGACATGAAAAATTTGACAGTGTAATGATAGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATTTCAAAAGCAACGAGAATGACCATGTCATTGTGTGCTTATATGTTGATGATATGCTAATTATATATAGGTAGCAATATCAACATTATTAAGGAAACCAAAAAAATGTTGGCTAAAAAATTTGAGATGAAAGACATGGGTGTTGCGCAGATGTTATTCTAGGTATCAAAATTTCTAGAACCCTACAAGAGTTAGTGCTATCTCAATCACATTATATTGATAAAATAGTGAAGAAATATACAAAACATGACATTGTGATTCCAAGGACCCCAATTGATGGTAGTCTCCATTCAAGTAAAAATAATGGAGATAGTATAGCACAATTAGAATACTCTCGCATCATTGGTAGTTTAATGTATATCATGAGTTGTACACGTCTTGATATAGCGTATGAGATAAGCAAGTTAAGTTGCTATACAAGTAATCCAGGTCATGATCATTGGAAAGTTATCTTGAGAATTTTGGGATACCTAAAGCATACTAAAAATTATGGATTACACTATACTCAATATCCTGCTGTACTTGAAGGCTATAGTGAAGCCAATTGGATATCGAGCACTAAAGGCTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAAGCGGTACTGTTTCTTGAAAATCTTTCAAACAAACATGTA

mRNA sequence

ATGTCCTCTCCTGAAGCTCCATATTGGGAAGAGGCTGTGAATACTGAAGTTAAGTCCATTATGCATAACCATATTTGGGAACTAATTGATCTTCCATTAGGAAATAATCCACTTGGTTGTTACAAGCAACAAGAAGAACTTGACTATTTTGATACATACTCACCAATTACTCGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGATATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATTCAATCACCTGAAGGTGTAATGATAGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATTTCAAAAGCAACGAGAATGACCATGTCATTGCTATAGTGAAGCCAATTGGATATCGAGCACTAAAGGCTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAAGCGGTACTGTTTCTTGAAAATCTTTCAAACAAACATGTA

Coding sequence (CDS)

ATGTCCTCTCCTGAAGCTCCATATTGGGAAGAGGCTGTGAATACTGAAGTTAAGTCCATTATGCATAACCATATTTGGGAACTAATTGATCTTCCATTAGGAAATAATCCACTTGGTTGTTACAAGCAACAAGAAGAACTTGACTATTTTGATACATACTCACCAATTACTCGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGATATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATTCAATCACCTGAAGGTGTAATGATAGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATTTCAAAAGCAACGAGAATGACCATGTCATTGCTATAGTGAAGCCAATTGGATATCGAGCACTAAAGGCTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAAGCGGTACTGTTTCTTGAAAATCTTTCAAACAAACATGTA

Homology

[Close]

BLAST of CSPI03G17540 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-16
Identity = 41/130 (31.54%), Postives = 75/130 (57.69%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           +S PE     +A+  E++S+  N  ++L++LP G  PL C                    
Sbjct: 818 LSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKAR 877

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 106
                ++Q++ +D+ + +SP+ ++TSIR +++++A    E+ Q+DVKT FL+G+L+EEIY
Sbjct: 878 LVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIY 937

[Close]

BLAST of CSPI03G17540 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 41/135 (30.37%), Postives = 71/135 (52.59%), Query Frame = 1


Query: 9    WEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQ 68
            WEEA+NTE+ +   N+ W +   P   N +                           + Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 69   QEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIYIQSPEGVM 119
            + ++DY +T++P+ RI+S R ++++   +  ++HQMDVKT FLNG L EEIY++ P+G+ 
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

[Close]

BLAST of CSPI03G17540 vs. TrEMBL
Match: A5B5M4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027195 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.4e-41
Identity = 83/153 (54.25%), Postives = 107/153 (69.93%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+PEAP+W+EA+N E++SIMHNH W+L+DLP GN PLGC                    
Sbjct: 97  MSTPEAPFWKEAINNEIESIMHNHTWKLMDLPPGNKPLGCKWIFKKKMKPDGTIDKYKAR 156

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                +KQ+E LD+FDTYSP+TRITSIR LIA + LH  +IHQMD KT FLNGEL+EEIY
Sbjct: 157 LVAKGFKQKEGLDFFDTYSPVTRITSIRXLIARTTLHNLKIHQMDAKTTFLNGELEEEIY 216

Query: 121 IQSPEGVMIANGFKINECDKCVYFKSNENDHVI 129
           ++ PE     + FK+NECDKCVY K+ ++++VI
Sbjct: 217 MEQPE-----DDFKMNECDKCVYTKNTQSEYVI 244

[Close]

BLAST of CSPI03G17540 vs. TrEMBL
Match: A5BQD5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037249 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.1e-40
Identity = 88/186 (47.31%), Postives = 113/186 (60.75%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+ EAP+W+EA+N+E++SIMHNH W+L+DLP GN  LGC                    
Sbjct: 486 MSTLEAPFWKEAINSEIESIMHNHTWKLVDLPPGNKHLGCKWIFKKKMKPDGTIDKYKAR 545

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                +KQ+E LD+FDTYSP+TRITSIR+LIAI ALH  EIHQMDVKT FLNGEL+E+IY
Sbjct: 546 LVAKGFKQKESLDFFDTYSPVTRITSIRVLIAIVALHNLEIHQMDVKTTFLNGELEEKIY 605

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           ++ PEG                                 VM++N FKINE DKCVY K+ 
Sbjct: 606 MEQPEGFVALGQEKKVCNLIKSLYGLKQAPKQWHEKFDKVMLSNDFKINESDKCVYIKNT 665

[Close]

BLAST of CSPI03G17540 vs. TrEMBL
Match: A5AJ58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010463 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-35
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+PEAPYW+EAVN E+ SIM NH WEL++LP GN P+GC                    
Sbjct: 1   MSTPEAPYWQEAVNDEINSIMQNHTWELVNLPPGNKPIGCKWIFKRKLQTNGTIDKYKAH 60

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 105
                Y+Q+E LD+FDTYSP+TRITSIRMLIA +A+H FEIHQMDVK  FLNG+LDEEIY
Sbjct: 61  LVAKGYRQKEGLDFFDTYSPVTRITSIRMLIATTAIHNFEIHQMDVKITFLNGDLDEEIY 120

[Close]

BLAST of CSPI03G17540 vs. TrEMBL
Match: A5AT67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016069 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-31
Identity = 79/186 (42.47%), Postives = 102/186 (54.84%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDL-----PLGNN------------------- 60
           ++S E   W+EA+ +E+ SI+ NH WEL+DL     PL +                    
Sbjct: 604 VNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKAR 663

Query: 61  -PLGCYKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
             +  Y+Q E LDYFDTYSP+TRI SIRM++AI+AL   EIHQMDVKT FLNG+LDEEIY
Sbjct: 664 LVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIY 723

Query: 121 IQSPE---------------------------------GVMIANGFKINECDKCVYFKSN 129
           ++ PE                                  VM+++GFKINECDKCVY K  
Sbjct: 724 MEQPEGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDT 783

[Close]

BLAST of CSPI03G17540 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.5e-31
Identity = 78/186 (41.94%), Postives = 102/186 (54.84%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDL-----PLGNN------------------- 60
           ++S E   W+EA+ +E+ SI+ NH WEL++L     PL +                    
Sbjct: 772 VNSTEGLMWKEAIKSEIDSILQNHTWELVBLPLGCKPLSSKWIFKRKMKVDGSIDKYKAR 831

Query: 61  -PLGCYKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
             +  Y+Q E LDYFDTYSP+TRI SIRM++AI+AL   EIHQMDVKT FLNG+LDEEIY
Sbjct: 832 LVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIY 891

Query: 121 IQSPE---------------------------------GVMIANGFKINECDKCVYFKSN 129
           ++ PE                                  VM+++GFKINECDKCVY K  
Sbjct: 892 MEQPEGFSAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDT 951

[Close]

BLAST of CSPI03G17540 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-17
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 1


Query: 9   WEEAVNTEVKSIMHNHIWELIDL-----PLG--------NNPLGC------------YKQ 68
           W  A++ E+ ++   H WE+  L     P+G         N  G             Y Q
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 69  QEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIYIQSPEGVM 122
           QE +D+ +T+SP+ ++TS+++++AISA++ F +HQ+D+   FLNG+LDEEIY++ P G  
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: gi|147773679|emb|CAN63175.1| (hypothetical protein VITISV_027195 [Vitis vinifera])

HSP 1 Score: 175.3 bits (443), Expect = 9.2e-41
Identity = 83/153 (54.25%), Postives = 107/153 (69.93%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+PEAP+W+EA+N E++SIMHNH W+L+DLP GN PLGC                    
Sbjct: 97  MSTPEAPFWKEAINNEIESIMHNHTWKLMDLPPGNKPLGCKWIFKKKMKPDGTIDKYKAR 156

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                +KQ+E LD+FDTYSP+TRITSIR LIA + LH  +IHQMD KT FLNGEL+EEIY
Sbjct: 157 LVAKGFKQKEGLDFFDTYSPVTRITSIRXLIARTTLHNLKIHQMDAKTTFLNGELEEEIY 216

Query: 121 IQSPEGVMIANGFKINECDKCVYFKSNENDHVI 129
           ++ PE     + FK+NECDKCVY K+ ++++VI
Sbjct: 217 MEQPE-----DDFKMNECDKCVYTKNTQSEYVI 244

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: gi|147815761|emb|CAN63736.1| (hypothetical protein VITISV_037249 [Vitis vinifera])

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 88/186 (47.31%), Postives = 113/186 (60.75%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+ EAP+W+EA+N+E++SIMHNH W+L+DLP GN  LGC                    
Sbjct: 486 MSTLEAPFWKEAINSEIESIMHNHTWKLVDLPPGNKHLGCKWIFKKKMKPDGTIDKYKAR 545

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                +KQ+E LD+FDTYSP+TRITSIR+LIAI ALH  EIHQMDVKT FLNGEL+E+IY
Sbjct: 546 LVAKGFKQKESLDFFDTYSPVTRITSIRVLIAIVALHNLEIHQMDVKTTFLNGELEEKIY 605

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           ++ PEG                                 VM++N FKINE DKCVY K+ 
Sbjct: 606 MEQPEGFVALGQEKKVCNLIKSLYGLKQAPKQWHEKFDKVMLSNDFKINESDKCVYIKNT 665

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: gi|848917419|ref|XP_012856116.1| (PREDICTED: uncharacterized protein LOC105975464 [Erythranthe guttata])

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 84/186 (45.16%), Postives = 109/186 (58.60%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           +S+PEAP  +EA+N+E+ SIM NH W L+DLP GN PLGC                    
Sbjct: 76  LSTPEAPLRKEAINSEIDSIMQNHTWVLVDLPPGNKPLGCKWILKRKYKADGSIDKYKVR 135

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                ++Q+E LD+FDTYSP+TRITSIR+L+AI+ALH  E+HQMDVKT FLNGEL+EEIY
Sbjct: 136 LVVKGFRQKEGLDFFDTYSPVTRITSIRVLLAIAALHNLEVHQMDVKTTFLNGELEEEIY 195

Query: 121 IQSP---------------------------------EGVMIANGFKINECDKCVYFKSN 129
           ++ P                                 +  ++ANGFKINECDKCVY K+ 
Sbjct: 196 MEQPKGIVAHGQESKVCKLVKSLYGLKQAPKQWHEKFDRTILANGFKINECDKCVYIKNT 255

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-35
Identity = 84/186 (45.16%), Postives = 107/186 (57.53%), Query Frame = 1


Query: 1    MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
            MSS EAP W+EA+ +E++SIM N+ WEL+DLPLG+ P+G                     
Sbjct: 2250 MSSSEAPLWKEAIKSEIESIMENNTWELVDLPLGSKPIGHKWIFKKKLKADGTIDKFKAR 2309

Query: 61   -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                 Y+Q+E LDYFDTYSP++RITSIR LIAI+A++ F+IHQMDVKT FLNGELDEEIY
Sbjct: 2310 LVAKGYRQKEGLDYFDTYSPVSRITSIRTLIAIAAVYNFDIHQMDVKTAFLNGELDEEIY 2369

Query: 121  IQSP---------------------------------EGVMIANGFKINECDKCVYFKSN 129
            ++ P                                 +  ++  GFKINE DKCVY KSN
Sbjct: 2370 MEQPEGFVLKGQESKVCKLVKSLYGLKQAPKQWHEKFDHTLLTYGFKINESDKCVYIKSN 2429

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: gi|147777909|emb|CAN77977.1| (hypothetical protein VITISV_010463 [Vitis vinifera])

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-35
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+PEAPYW+EAVN E+ SIM NH WEL++LP GN P+GC                    
Sbjct: 1   MSTPEAPYWQEAVNDEINSIMQNHTWELVNLPPGNKPIGCKWIFKRKLQTNGTIDKYKAH 60

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 105
                Y+Q+E LD+FDTYSP+TRITSIRMLIA +A+H FEIHQMDVK  FLNG+LDEEIY
Sbjct: 61  LVAKGYRQKEGLDFFDTYSPVTRITSIRMLIATTAIHNFEIHQMDVKITFLNGDLDEEIY 120

The following BLAST results are available for this feature:

BLAST of CSPI03G17540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	4.6e-16	31.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	2.3e-15	30.37	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]

BLAST of CSPI03G17540 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B5M4_VITVI	6.4e-41	54.25	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027195 PE=4 SV=1	[more]
A5BQD5_VITVI	7.1e-40	47.31	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037249 PE=4 SV=1	[more]
A5AJ58_VITVI	1.4e-35	56.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010463 PE=4 SV=1	[more]
A5AT67_VITVI	2.1e-31	42.47	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016069 PE=4 SV=1	[more]
A5AMN2_VITVI	3.5e-31	41.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1	[more]

BLAST of CSPI03G17540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	5.7e-17	32.61	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

BLAST of CSPI03G17540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147773679\|emb\|CAN63175.1\|	9.2e-41	54.25	hypothetical protein VITISV_027195 [Vitis vinifera]	[more]
gi\|147815761\|emb\|CAN63736.1\|	1.0e-39	47.31	hypothetical protein VITISV_037249 [Vitis vinifera]	[more]
gi\|848917419\|ref\|XP_012856116.1\|	1.2e-37	45.16	PREDICTED: uncharacterized protein LOC105975464 [Erythranthe guttata]	[more]
gi\|657990185\|ref\|XP_008387315.1\|	2.0e-35	45.16	PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]	[more]
gi\|147777909\|emb\|CAN77977.1\|	2.0e-35	56.59	hypothetical protein VITISV_010463 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G17540.1	CSPI03G17540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 41..104 score: 8.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..131 score: 7.1
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 1..131 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G17540	Silver-seed gourd	carcpiB0203
CSPI03G17540	Silver-seed gourd	carcpiB0799
CSPI03G17540	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G17540	Watermelon (97103) v2	cpiwmbB221
CSPI03G17540	Wax gourd	cpiwgoB283
CSPI03G17540	Cucumber (Gy14) v1	cgycpiB133
CSPI03G17540	Cucurbita maxima (Rimu)	cmacpiB247
CSPI03G17540	Cucurbita maxima (Rimu)	cmacpiB461
CSPI03G17540	Cucurbita moschata (Rifu)	cmocpiB235
CSPI03G17540	Cucurbita moschata (Rifu)	cmocpiB449
CSPI03G17540	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G17540	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G17540	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G17540	Watermelon (97103) v1	cpiwmB242
CSPI03G17540	Cucurbita pepo (Zucchini)	cpecpiB551
CSPI03G17540	Cucurbita pepo (Zucchini)	cpecpiB605
CSPI03G17540	Bottle gourd (USVL1VR-Ls)	cpilsiB209
CSPI03G17540	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G17540	Cucumber (Gy14) v2	cgybcpiB110