CSPI03G17460 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G17460
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTy3-gypsy retrotransposon protein
LocationChr3 : 13084354 .. 13085077 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAATCAGAGGTCGTTAACAATTGCTTGGAACTATACTTATGGTGTTTTTGTCACAAGAAACCACAAACATGGAGTGATAAAATTGCATGGGCCGAGTATTGGTACAACACCAACTACCAAGCGTCAATAAAAAACACTCCTTACGCTGTAGTTTAAGGACAACAACCGCCACCTATCATTTCTTATGGCCAAGCGGGCACCACCTCGAATGATTCGGTGGAATATCAGTTGCAAGCTCGAGACGAAATGCTAACTGCCTTAAAGGGTCATTTGAGACATGCACAAGAGAAAATTAAAAAAATTTCCGATGTGCATCGTAGAGACGTGGCTTTTGGCATTGGGTATATCTGAAATTACAGCCCTACAGACAGCAATCAGTCACTAAGAAGCGATGTGAAAGGTTATCTCCCAAATATTTTTGGCCCTATATGGTGTTGGGTAGAGTGGGGGAGGTAGCCTATTTGTTGGACCTGCCGGAAACTGCCAAAATCCACCCGGTTTTCTACGTTTCACAACTTAAGAAAGCGCTGGAAGATAAACATACAATCCAACCAGATATAACCATGCTCAATGATCAAATGGAGTTTGTTTTGGAACCTGAAAACATGACCCAAATTCGTTGGAACGATGCTGAACGAGATTGGGAATATTTAATTCAATGAAAGGATCAGCCAAGCCATGAAGCAACATGAGAGTCCTACGCTATGCTTACTAACCAA

mRNA sequence

ATGGGCAATCAGAGGTCGTTAACAATTGCTTGGAACTATACTTATGGTGTTTTTGTCACAAGAAACCACAAACATGGAGTGATAAAATTGCATGGGCCGAGTATTGCGGGCACCACCTCGAATGATTCGGTGGAATATCAGTTGCAAGCTCGAGACGAAATGCTAACTGCCTTAAAGGGTCATTTGAGACATGCACAAGAGAAAATTAAAAAAATTTCCGATGTGCATCGTAGAGACGTGGCTTTTGGCATTGGAGTGGGGGAGGTAGCCTATTTGTTGGACCTGCCGGAAACTGCCAAAATCCACCCGGTTTTCTACGTTTCACAACTTAAGAAAGCGCTGGAAGATAAACATACAATCCAACCAGATATAACCATGCTCAATGATCAAATGGAGTTTGTTTTGGAACCTGAAAACATGACCCAAATTCGTTGGAACGATGCTGAACGAGATTGGGAATATTTAATTCAATGA

Coding sequence (CDS)

ATGGGCAATCAGAGGTCGTTAACAATTGCTTGGAACTATACTTATGGTGTTTTTGTCACAAGAAACCACAAACATGGAGTGATAAAATTGCATGGGCCGAGTATTGCGGGCACCACCTCGAATGATTCGGTGGAATATCAGTTGCAAGCTCGAGACGAAATGCTAACTGCCTTAAAGGGTCATTTGAGACATGCACAAGAGAAAATTAAAAAAATTTCCGATGTGCATCGTAGAGACGTGGCTTTTGGCATTGGAGTGGGGGAGGTAGCCTATTTGTTGGACCTGCCGGAAACTGCCAAAATCCACCCGGTTTTCTACGTTTCACAACTTAAGAAAGCGCTGGAAGATAAACATACAATCCAACCAGATATAACCATGCTCAATGATCAAATGGAGTTTGTTTTGGAACCTGAAAACATGACCCAAATTCGTTGGAACGATGCTGAACGAGATTGGGAATATTTAATTCAATGA
Homology
[Close]
BLAST of CSPI03G17460 vs. TrEMBL
Match: E5GBA8_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-33
Identity = 77/145 (53.10%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 27  VIKLHG-PSIAGTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG 86
           V++LHG P +  +  +      +      L ALK HL+HAQE++KK +DVH RDV F I 
Sbjct: 619 VVRLHGYPRLIASNRDRVFLSHIWTELFRLQALKRHLQHAQEQMKKFADVHHRDVVFDIE 678

Query: 87  -------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTIQPDITMLNDQME 146
                        VGEV YLLDLPETAKIH +F++SQLKKA+ DKH +QPDI +LNDQME
Sbjct: 679 DWVYLKLQPYRQQVGEVTYLLDLPETAKIHLLFHISQLKKAVGDKHQVQPDIAILNDQME 738

Query: 147 FVLEPENMTQIRWNDAERDWEYLIQ 158
            VL+P+N+TQ+ WN A+RDWEYL+Q
Sbjct: 739 LVLKPKNVTQLCWNKAKRDWEYLVQ 763

[Close]
BLAST of CSPI03G17460 vs. TrEMBL
Match: A5C9A7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020633 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-11
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 1 

Query: 37   GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIGV------GEVA 96
            G +  + V+  L  RDE+L  LK +L  A  ++K + D  RR+V F IGV      G+VA
Sbjct: 1043 GLSRVNEVDQSLLTRDEVLQQLKTNLELAATRMKHVVDQKRREVEFQIGVSVEQKLGKVA 1102

Query: 97   YLLDLPETAKIHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRW 146
            Y L LP   KIHPVF+VS LKK +        D+  ++D+ +  + PE +   RW
Sbjct: 1103 YRLSLPPEVKIHPVFHVSLLKKYVGTSLPALVDLAPISDEGQLQVTPEKVVNTRW 1157

[Close]
BLAST of CSPI03G17460 vs. TrEMBL
Match: A5AP28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036155 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 44/145 (30.34%), Postives = 67/145 (46.21%), Query Frame = 1 

Query: 37  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
           G++  + V   L +RD++L  LK +L  A  ++K+I+D  RRD+ F  G           
Sbjct: 434 GSSLVNEVNQNLASRDDLLHQLKLNLHQASNRMKQIADSKRRDIEFNEGDLVFLRLHPYR 493

Query: 97  -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 146
                                    +G+VAY L LP  ++IHPVF+VS LKK + D +  
Sbjct: 494 QQTVFKRASQKLAHRFYEPFPIEKRIGKVAYQLQLPAGSRIHPVFHVSLLKKTIGDSNAC 553

[Close]
BLAST of CSPI03G17460 vs. TrEMBL
Match: A5CAG8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038293 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 1 

Query: 35  IAGTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG--------- 94
           + GT    +V+  L  RD +L  LK +L  A  ++K+++D  +                 
Sbjct: 328 LMGTIPVHAVDQNLAFRDAILRQLKTNLHAATNRMKQVADSKQASQKLASRFYGPYQIEQ 387

Query: 95  -VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIR 146
            +G+VAY L+L E +KIHP+F+VS LKK L + +    ++ + +D+ E VLEP+ +   R
Sbjct: 388 RIGKVAYKLNLLEGSKIHPIFHVSLLKKKLGEPNNTTVELPLTDDEGEIVLEPKGILDTR 447

[Close]
BLAST of CSPI03G17460 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 38   TTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGI 85
            TT NDSVE+QLQ RDE L  LK HL+HAQ+++KK ++VHRRDV F I
Sbjct: 1071 TTPNDSVEFQLQTRDETLATLKRHLQHAQDQMKKFANVHRRDVVFDI 1117

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: gi|307135885|gb|ADN33750.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-33
Identity = 77/145 (53.10%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 27  VIKLHG-PSIAGTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG 86
           V++LHG P +  +  +      +      L ALK HL+HAQE++KK +DVH RDV F I 
Sbjct: 619 VVRLHGYPRLIASNRDRVFLSHIWTELFRLQALKRHLQHAQEQMKKFADVHHRDVVFDIE 678

Query: 87  -------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTIQPDITMLNDQME 146
                        VGEV YLLDLPETAKIH +F++SQLKKA+ DKH +QPDI +LNDQME
Sbjct: 679 DWVYLKLQPYRQQVGEVTYLLDLPETAKIHLLFHISQLKKAVGDKHQVQPDIAILNDQME 738

Query: 147 FVLEPENMTQIRWNDAERDWEYLIQ 158
            VL+P+N+TQ+ WN A+RDWEYL+Q
Sbjct: 739 LVLKPKNVTQLCWNKAKRDWEYLVQ 763

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: gi|659130784|ref|XP_008465349.1| (PREDICTED: uncharacterized protein LOC103502989 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 86  VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIR 145
           VGEVAYLLDL +TAKIHPVF+VSQLKKA+ DKH + PD+TM+NDQME VLEPE +TQ+R
Sbjct: 377 VGEVAYLLDLSKTAKIHPVFHVSQLKKAVGDKHPVYPDVTMINDQMELVLEPEYVTQLR 435

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: gi|727451420|ref|XP_010507453.1| (PREDICTED: uncharacterized protein LOC104784079 [Camelina sativa])

HSP 1 Score: 79.7 bits (195), Expect = 5.0e-12
Identity = 50/125 (40.00%), Postives = 67/125 (53.60%), Query Frame = 1 

Query: 38   TTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIGVGEVAYLLD--- 97
            +T N  +E  LQ  D ML  +K HL HA + +K  +D HRRDV F + +     L     
Sbjct: 1157 STQNFELENLLQECDRMLADIKSHLVHAPQLMKNNADKHRRDVEFVVDLWVYLKLRPYRQ 1216

Query: 98   ---LPETAKIHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERD 157
               LP  +KIHPVF+VSQLK  L   H + P     +D  E VLEP  + + R+N A+  
Sbjct: 1217 HSVLPAGSKIHPVFHVSQLKHVLGAHHQVLPLPETFSDAGELVLEPAAILETRYN-AQGV 1276

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 52/155 (33.55%), Postives = 72/155 (46.45%), Query Frame = 1 

Query: 39   TSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIGVG----------- 98
            T+N+ VE  L+ RD  L ALK +L  AQ ++KK +D+ RR++   +G             
Sbjct: 929  TTNNEVELMLKERDSALNALKENLTLAQNRMKKFADLKRRELKLKVGEEVYLKLKPYRQR 988

Query: 99   -------------------------EVAYLLDLPETAKIHPVFYVSQLKKALEDKHTIQP 158
                                      VAY LDLP  A IH VF++SQLK  L  +  +Q 
Sbjct: 989  SLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLGAQQVVQH 1048

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: gi|147841216|emb|CAN64356.1| (hypothetical protein VITISV_020633 [Vitis vinifera])

HSP 1 Score: 75.9 bits (185), Expect = 7.2e-11
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 1 

Query: 37   GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIGV------GEVA 96
            G +  + V+  L  RDE+L  LK +L  A  ++K + D  RR+V F IGV      G+VA
Sbjct: 1043 GLSRVNEVDQSLLTRDEVLQQLKTNLELAATRMKHVVDQKRREVEFQIGVSVEQKLGKVA 1102

Query: 97   YLLDLPETAKIHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRW 146
            Y L LP   KIHPVF+VS LKK +        D+  ++D+ +  + PE +   RW
Sbjct: 1103 YRLSLPPEVKIHPVFHVSLLKKYVGTSLPALVDLAPISDEGQLQVTPEKVVNTRW 1157

The following BLAST results are available for this feature:
BLAST of CSPI03G17460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G17460 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBA8_CUCME2.1e-3353.10Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5C9A7_VITVI5.0e-1138.26Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020633 PE=4 SV=1[more]
A5AP28_VITVI3.3e-1030.34Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036155 PE=4 SV=1[more]
A5CAG8_VITVI1.0e-0832.23Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038293 PE=4 SV=1[more]
E5GC18_CUCME1.4e-0865.96Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI03G17460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G17460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135885|gb|ADN33750.1|3.0e-3353.10ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659130784|ref|XP_008465349.1|3.9e-1776.27PREDICTED: uncharacterized protein LOC103502989 [Cucumis melo][more]
gi|727451420|ref|XP_010507453.1|5.0e-1240.00PREDICTED: uncharacterized protein LOC104784079 [Camelina sativa][more]
gi|659094491|ref|XP_008448087.1|1.1e-1133.55PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
gi|147841216|emb|CAN64356.1|7.2e-1138.26hypothetical protein VITISV_020633 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G17460.1CSPI03G17460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 41..144
score: 1.7
NoneNo IPR availablePANTHERPTHR24559:SF186SUBFAMILY NOT NAMEDcoord: 41..144
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G17460Cucumber (Gy14) v1cgycpiB133
CSPI03G17460Cucumber (Chinese Long) v2cpicuB120
CSPI03G17460Melon (DHL92) v3.5.1cpimeB241
CSPI03G17460Watermelon (Charleston Gray)cpiwcgB237
CSPI03G17460Watermelon (97103) v1cpiwmB242
CSPI03G17460Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G17460Melon (DHL92) v3.6.1cpimedB239
CSPI03G17460Cucumber (Gy14) v2cgybcpiB110
CSPI03G17460Cucumber (Chinese Long) v3cpicucB144
CSPI03G17460Watermelon (97103) v2cpiwmbB221
CSPI03G17460Wax gourdcpiwgoB283