CSPI03G04630 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G04630
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	GRP3S, putative
Location	Chr3 : 3762907 .. 3763503 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGAAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTTCATCGTCCCAGATTTGGAGGTGGCGGATTGGGTGGAGGAGGTGGTGGAGGATTCGGTGGAGGTGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTCGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGGTTTGGTGGGGGAGGTGGAGGTGGACTTGGTGGTGGAGCAGGCGGAGGATTCGGTGGTGGGGCCGGTGCAGGAGGTGGATTCCCTTGAAGGATCTAATGCTTTTACTATCAAATTAGAGCAGAGAAAAAAAAAAGTGTCTTTAAGAAACCCCATCTCATATTATAGTTTTTCGTATATTATAGTTTTTGCATGTGCAATAATGTGTTTGGTGTTTGTTGTATTAAAATTAGAATTAGGTTCATATGTGAAAAAGCTCTCTCTTTTAGCTCACAATTTCTTATATGCCTAATTGTAATTTCCAAGAAGATAAAATATTTTTAAAAAATT

mRNA sequence

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGAAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTTCATCGTCCCAGATTTGGAGGTGGCGGATTGGGTGGAGGAGGTGGTGGAGGATTCGGTGGAGGTGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTCGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGGTTTGGTGGGGGAGGTGGAGGTGGACTTGGTGGTGGAGCAGGCGGAGGATTCGGTGGTGGGGCCGGTGCAGGAGGTGGATTCCCTTGA

Coding sequence (CDS)

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGAAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTTCATCGTCCCAGATTTGGAGGTGGCGGATTGGGTGGAGGAGGTGGTGGAGGATTCGGTGGAGGTGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTCGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGGTTTGGTGGGGGAGGTGGAGGTGGACTTGGTGGTGGAGCAGGCGGAGGATTCGGTGGTGGGGCCGGTGCAGGAGGTGGATTCCCTTGA

Homology

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BLAST of CSPI03G04630 vs. TrEMBL
Match: A0A0A0L2A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G064240 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFF RPRFGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG 115
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG 114

[Close]

BLAST of CSPI03G04630 vs. TrEMBL
Match: B9SVA0_RICCO (GRP3S, putative OS=Ricinus communis GN=RCOM_1303490 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 93/130 (71.54%), Postives = 102/130 (78.46%), Query Frame = 1


Query: 1   MASKIVFLVFLGAFLFTTSGARKLST--ASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGG 60
           MASK+  ++ LGAF+ T++ AR L +  ASF+DEKFF RPR  GGGLGGGGGGGFGGGGG
Sbjct: 1   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPR-SGGGLGGGGGGGFGGGGG 60

Query: 61  GGLGGGSGGGFGGGSGFGGGVGGGAGGG------GGGGFGGGGGGGL------GGGAGGG 117
           GGLGGG  GG GGG+GFGGG GGGAGGG      GGGGFGGGGGGGL      GGGAGGG
Sbjct: 61  GGLGGG--GGAGGGAGFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGG 120

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: gi|778688370|ref|XP_011652732.1| (PREDICTED: glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 4.9e-28
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 1


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFF RPRFGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGFP 119
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGFP
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGFP 118

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: gi|700200942|gb|KGN56075.1| (hypothetical protein Csa_3G064240 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFF RPRFGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG 115
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG 114

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: gi|778675975|ref|XP_011650511.1| (PREDICTED: glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 9.5e-24
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 1


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFF RPRFGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGG 117
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGG+  GFGGGAG GGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGS--GFGGGAGFGGG 114

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: gi|1000945391|ref|XP_002529919.2| (PREDICTED: glycine-rich cell wall structural protein [Ricinus communis])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 93/130 (71.54%), Postives = 102/130 (78.46%), Query Frame = 1


Query: 1   MASKIVFLVFLGAFLFTTSGARKLST--ASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGG 60
           MASK+  ++ LGAF+ T++ AR L +  ASF+DEKFF RPR  GGGLGGGGGGGFGGGGG
Sbjct: 4   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPR-SGGGLGGGGGGGFGGGGG 63

Query: 61  GGLGGGSGGGFGGGSGFGGGVGGGAGGG------GGGGFGGGGGGGL------GGGAGGG 117
           GGLGGG  GG GGG+GFGGG GGGAGGG      GGGGFGGGGGGGL      GGGAGGG
Sbjct: 64  GGLGGG--GGAGGGAGFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGG 123

The following BLAST results are available for this feature:

BLAST of CSPI03G04630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G04630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2A7_CUCSA	3.2e-26	98.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G064240 PE=4 SV=1	[more]
B9SVA0_RICCO	2.5e-07	71.54	GRP3S, putative OS=Ricinus communis GN=RCOM_1303490 PE=4 SV=1	[more]

BLAST of CSPI03G04630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G04630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688370\|ref\|XP_011652732.1\|	4.9e-28	98.31	PREDICTED: glycine-rich cell wall structural protein-like [Cucumis sativus]	[more]
gi\|700200942\|gb\|KGN56075.1\|	4.6e-26	98.25	hypothetical protein Csa_3G064240 [Cucumis sativus]	[more]
gi\|778675975\|ref\|XP_011650511.1\|	9.5e-24	94.83	PREDICTED: glycine-rich cell wall structural protein-like [Cucumis sativus]	[more]
gi\|1000945391\|ref\|XP_002529919.2\|	3.6e-07	71.54	PREDICTED: glycine-rich cell wall structural protein [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04630.1	CSPI03G04630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G04630	Cla005356	Watermelon (97103) v1	cpiwmB193
CSPI03G04630	ClCG10G004960	Watermelon (Charleston Gray)	cpiwcgB190
CSPI03G04630	Lsi05G005530	Bottle gourd (USVL1VR-Ls)	cpilsiB197
CSPI03G04630	Cla97C10G189210	Watermelon (97103) v2	cpiwmbB184

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G04630	Wax gourd	cpiwgoB218
CSPI03G04630	Cucumber (Gy14) v1	cgycpiB015
CSPI03G04630	Cucurbita maxima (Rimu)	cmacpiB333
CSPI03G04630	Cucurbita maxima (Rimu)	cmacpiB832
CSPI03G04630	Cucurbita moschata (Rifu)	cmocpiB324
CSPI03G04630	Cucurbita moschata (Rifu)	cmocpiB819
CSPI03G04630	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G04630	Melon (DHL92) v3.5.1	cpimeB240
CSPI03G04630	Watermelon (Charleston Gray)	cpiwcgB218
CSPI03G04630	Cucurbita pepo (Zucchini)	cpecpiB216
CSPI03G04630	Melon (DHL92) v3.6.1	cpimedB225
CSPI03G04630	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G04630	Silver-seed gourd	carcpiB0524
CSPI03G04630	Cucumber (Chinese Long) v3	cpicucB144