CSPI03G04280 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G04280
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNuclear transcription factor Y protein
LocationChr3 : 3498855 .. 3499487 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTGACCCCAAACAACCCAACCTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGGGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTGGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA

mRNA sequence

ATGATGCTGACCCCAAACAACCCAACCTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGGGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTGGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA

Coding sequence (CDS)

ATGATGCTGACCCCAAACAACCCAACCTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGGGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTGGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA
Homology
[Close]
BLAST of CSPI03G04280 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 4.6e-45
Identity = 103/182 (56.59%), Postives = 123/182 (67.58%), Query Frame = 1 

Query: 34  TSPLSVAATANNN-----EQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETI 93
           TS + VA   + N     +Q   C+ REQDQYMP+ANVIRIM++ LPSHAKISDD KETI
Sbjct: 32  TSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETI 91

Query: 94  QECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSES 153
           QECVSEYISF+T EANERCQREQRKT+TAED+LWAM KLGFD+Y++PLTVF+NRYR  E+
Sbjct: 92  QECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIET 151

Query: 154 DR---IRTEPMWRRNV-------DYGPQVGMISPYGQGFQIGHVPAGMFDAMGGYYGGGG 201
           DR   +R EP   R          +GP  G+  P   G+  G +   M    G YY  G 
Sbjct: 152 DRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGY--GMLDQSMVMGGGRYYQNGS 211

[Close]
BLAST of CSPI03G04280 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 85/109 (77.98%), Postives = 99/109 (90.83%), Query Frame = 1 

Query: 42  TANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 101
           T+N  E+  +C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 46  TSNGGEE--ECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 105

Query: 102 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESDR 151
           EANERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYR  E +R
Sbjct: 106 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of CSPI03G04280 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-32
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 1 

Query: 44  NNNEQNQQCLV--REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 103
           N N QN Q  +  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T 
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTG 72

Query: 104 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESDRIRTEPMWRRNV 163
           EA+++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+R  E +R           
Sbjct: 73  EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER----------- 132

Query: 164 DYGPQVGMISPYGQGFQIGHVPAGMFDAMGGYYGGGG 199
                 G+  P   G ++G          GG+YGGGG
Sbjct: 133 -----TGLGRPQ-TGGEVGEHQRDAVGDGGGFYGGGG 152

[Close]
BLAST of CSPI03G04280 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.8e-32
Identity = 61/120 (50.83%), Postives = 93/120 (77.50%), Query Frame = 1 

Query: 34  TSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVS 93
           T+P S ++  NNN  N     +EQD+++P+ANV RIMK++LP + KIS D KET+QECVS
Sbjct: 18  TNPGSPSSKTNNNNNNN----KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 77

Query: 94  EYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESDRIRT 153
           E+ISF+T EA+++CQRE+RKT+  +D++WA+  LGF+DY+ PL V+L +YR +E +++ +
Sbjct: 78  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNS 133

[Close]
BLAST of CSPI03G04280 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.6e-32
Identity = 60/96 (62.50%), Postives = 82/96 (85.42%), Query Frame = 1 

Query: 54  VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRK 113
           VREQD+++P+AN+ RIMK+ +P++ KI+ D KET+QECVSE+ISFITSEA+++CQRE+RK
Sbjct: 29  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88

Query: 114 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESD 150
           T+  +D+LWAM  LGF+DYIEPL V+L +YR  E D
Sbjct: 89  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]
BLAST of CSPI03G04280 vs. TrEMBL
Match: A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.2e-103
Identity = 199/209 (95.22%), Postives = 201/209 (96.17%), Query Frame = 1 

Query: 2   MLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 61
           MLTPNNPTSIN+NPNTN HLS+GGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM
Sbjct: 33  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 92

Query: 62  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 121
           PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL
Sbjct: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 152

Query: 122 WAMGKLGFDDYIEPLTVFLNRYRGSESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIGH 181
           WAMGKLGFDDYIEPLTVFLNRYR SES  IRTEPM RRNVDYG QVGMISPYGQ FQIG 
Sbjct: 153 WAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 212

Query: 182 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 211
           VPAGMFDAMGGYYGGGGSGGPSAGNNSQL
Sbjct: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]
BLAST of CSPI03G04280 vs. TrEMBL
Match: A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.0e-84
Identity = 172/210 (81.90%), Postives = 173/210 (82.38%), Query Frame = 1 

Query: 1   MMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 60
           MMLTPNNP SINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY
Sbjct: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102

Query: 61  MPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDV 120
           MPMAN                             YISFITSEANERCQREQRKTVTAEDV
Sbjct: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 162

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRGSESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIG 180
           LWAMGKLGFD+YIEPLTVFLNRYR SES  IRTEPM RRNVDYGPQVGMISPYGQ FQIG
Sbjct: 163 LWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQAFQIG 221

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 211
           HVPAGMFDAMGGYYGGGGS GPS GNNSQL
Sbjct: 223 HVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]
BLAST of CSPI03G04280 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 8.6e-59
Identity = 129/203 (63.55%), Postives = 155/203 (76.35%), Query Frame = 1 

Query: 10  SINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRI 69
           S N+N NTN  +++   + GN+           AN+N     C+VREQDQYMP+ANVIRI
Sbjct: 27  SSNSNTNTNTIINNNAANNGNA-----------ANSNTMPPPCMVREQDQYMPIANVIRI 86

Query: 70  MKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGF 129
           M+RILP+HAKISDD KETIQECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGF
Sbjct: 87  MRRILPTHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGF 146

Query: 130 DDYIEPLTVFLNRYRGSESDR--IRTEPMWRRNVDYGPQVGMISPYGQGFQIGHVPAGMF 189
           DDY+EPLTVFLNRYR +E++R  +R+EPM +R +DYGP + M++PYG GF +GH   G+F
Sbjct: 147 DDYVEPLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIF 206

Query: 190 D---AMGGYY---GGGGSGGPSA 205
           D   AMGGY      GG GGPS+
Sbjct: 207 DGATAMGGYMRDGSSGGGGGPSS 216

[Close]
BLAST of CSPI03G04280 vs. TrEMBL
Match: A0A0D2SEP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.3e-58
Identity = 128/198 (64.65%), Postives = 152/198 (76.77%), Query Frame = 1 

Query: 19  HHLSDGGTSI----GNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRIL 78
           H  S  G SI     ++S T+ +     AN+N     C+VREQDQYMP+ANVIRIM+RIL
Sbjct: 13  HAKSSSGLSIMHGDSSNSNTNTIINNNAANSNTMPPPCMVREQDQYMPIANVIRIMRRIL 72

Query: 79  PSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIE 138
           P+HAKISDD KETIQECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFDDY+E
Sbjct: 73  PTHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVE 132

Query: 139 PLTVFLNRYRGSESDR--IRTEPMWRRNVDYGPQVGMISPYGQGFQIGHVPAGMFD---A 198
           PLTVFLNRYR +E++R  +R+EPM +R +DYGP + M++PYG GF +GH   G+FD   A
Sbjct: 133 PLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATA 192

Query: 199 MGGYY---GGGGSGGPSA 205
           MGGY      GG GGPS+
Sbjct: 193 MGGYMRDGSSGGGGGPSS 208

[Close]
BLAST of CSPI03G04280 vs. TrEMBL
Match: A0A0E3N6S2_GOSBA (Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.6e-58
Identity = 123/183 (67.21%), Postives = 147/183 (80.33%), Query Frame = 1 

Query: 30  NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ 89
           ++S T+ +     AN+N     C+VREQDQYMP+ANVIRIM+RILP+HAKISDD KETIQ
Sbjct: 13  SNSNTNTIINNNAANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAKISDDAKETIQ 72

Query: 90  ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESD 149
           ECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFDDY+EPLTVFLNRYR +E++
Sbjct: 73  ECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENE 132

Query: 150 R--IRTEPMWRRNVDYGPQVGMISPYGQGFQIGHVPAGMFD---AMGGYY---GGGGSGG 205
           R  +R+EPM +R +DYGP + M++PYG GF +GH   G+FD   AMGGY      GG GG
Sbjct: 133 RTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGGG 192

[Close]
BLAST of CSPI03G04280 vs. TAIR10
Match: AT1G21970.1 (AT1G21970.1 Histone superfamily protein)

HSP 1 Score: 182.6 bits (462), Expect = 2.6e-46
Identity = 103/182 (56.59%), Postives = 123/182 (67.58%), Query Frame = 1 

Query: 34  TSPLSVAATANNN-----EQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETI 93
           TS + VA   + N     +Q   C+ REQDQYMP+ANVIRIM++ LPSHAKISDD KETI
Sbjct: 32  TSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETI 91

Query: 94  QECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSES 153
           QECVSEYISF+T EANERCQREQRKT+TAED+LWAM KLGFD+Y++PLTVF+NRYR  E+
Sbjct: 92  QECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIET 151

Query: 154 DR---IRTEPMWRRNV-------DYGPQVGMISPYGQGFQIGHVPAGMFDAMGGYYGGGG 201
           DR   +R EP   R          +GP  G+  P   G+  G +   M    G YY  G 
Sbjct: 152 DRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGY--GMLDQSMVMGGGRYYQNGS 211

[Close]
BLAST of CSPI03G04280 vs. TAIR10
Match: AT5G47670.1 (AT5G47670.1 nuclear factor Y, subunit B6)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44
Identity = 85/109 (77.98%), Postives = 99/109 (90.83%), Query Frame = 1 

Query: 42  TANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 101
           T+N  E+  +C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 46  TSNGGEE--ECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 105

Query: 102 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESDR 151
           EANERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYR  E +R
Sbjct: 106 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of CSPI03G04280 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-33
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 1 

Query: 44  NNNEQNQQCLV--REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 103
           N N QN Q  +  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T 
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTG 72

Query: 104 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESDRIRTEPMWRRNV 163
           EA+++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+R  E +R           
Sbjct: 73  EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER----------- 132

Query: 164 DYGPQVGMISPYGQGFQIGHVPAGMFDAMGGYYGGGG 199
                 G+  P   G ++G          GG+YGGGG
Sbjct: 133 -----TGLGRPQ-TGGEVGEHQRDAVGDGGGFYGGGG 152

[Close]
BLAST of CSPI03G04280 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-33
Identity = 61/120 (50.83%), Postives = 93/120 (77.50%), Query Frame = 1 

Query: 34  TSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVS 93
           T+P S ++  NNN  N     +EQD+++P+ANV RIMK++LP + KIS D KET+QECVS
Sbjct: 18  TNPGSPSSKTNNNNNNN----KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 77

Query: 94  EYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESDRIRT 153
           E+ISF+T EA+++CQRE+RKT+  +D++WA+  LGF+DY+ PL V+L +YR +E +++ +
Sbjct: 78  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNS 133

[Close]
BLAST of CSPI03G04280 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 138.3 bits (347), Expect = 5.6e-33
Identity = 61/99 (61.62%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 55  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 114
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 115 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRGSESDRIRT 154
           +  +D+LWAM  LGF+DY+EPL V+L +YR  E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]
BLAST of CSPI03G04280 vs. NCBI nr
Match: gi|700200905|gb|KGN56038.1| (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 1.7e-103
Identity = 199/209 (95.22%), Postives = 201/209 (96.17%), Query Frame = 1 

Query: 2   MLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 61
           MLTPNNPTSIN+NPNTN HLS+GGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM
Sbjct: 33  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 92

Query: 62  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 121
           PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL
Sbjct: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 152

Query: 122 WAMGKLGFDDYIEPLTVFLNRYRGSESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIGH 181
           WAMGKLGFDDYIEPLTVFLNRYR SES  IRTEPM RRNVDYG QVGMISPYGQ FQIG 
Sbjct: 153 WAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 212

Query: 182 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 211
           VPAGMFDAMGGYYGGGGSGGPSAGNNSQL
Sbjct: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]
BLAST of CSPI03G04280 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 380.2 bits (975), Expect = 2.4e-102
Identity = 191/210 (90.95%), Postives = 199/210 (94.76%), Query Frame = 1 

Query: 1   MMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 60
           MM+TPN  TSINN PN+NHHLS+GGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDV 120
           MP+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRGSESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYR SESDRIRTEP+ RRNVDYGPQVGMISPYGQ FQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 211
           HVPAGMFDAMGGYYGGGG GGPSAGN SQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]
BLAST of CSPI03G04280 vs. NCBI nr
Match: gi|700200906|gb|KGN56039.1| (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 2.9e-84
Identity = 172/210 (81.90%), Postives = 173/210 (82.38%), Query Frame = 1 

Query: 1   MMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 60
           MMLTPNNP SINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY
Sbjct: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102

Query: 61  MPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDV 120
           MPMAN                             YISFITSEANERCQREQRKTVTAEDV
Sbjct: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 162

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRGSESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIG 180
           LWAMGKLGFD+YIEPLTVFLNRYR SES  IRTEPM RRNVDYGPQVGMISPYGQ FQIG
Sbjct: 163 LWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQAFQIG 221

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 211
           HVPAGMFDAMGGYYGGGGS GPS GNNSQL
Sbjct: 223 HVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]
BLAST of CSPI03G04280 vs. NCBI nr
Match: gi|728844156|gb|KHG23599.1| (Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum])

HSP 1 Score: 235.0 bits (598), Expect = 1.2e-58
Identity = 129/203 (63.55%), Postives = 155/203 (76.35%), Query Frame = 1 

Query: 10  SINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRI 69
           S N+N NTN  +++   + GN+           AN+N     C+VREQDQYMP+ANVIRI
Sbjct: 27  SSNSNTNTNTIINNNAANNGNA-----------ANSNTMPPPCMVREQDQYMPIANVIRI 86

Query: 70  MKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGF 129
           M+RILP+HAKISDD KETIQECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGF
Sbjct: 87  MRRILPTHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGF 146

Query: 130 DDYIEPLTVFLNRYRGSESDR--IRTEPMWRRNVDYGPQVGMISPYGQGFQIGHVPAGMF 189
           DDY+EPLTVFLNRYR +E++R  +R+EPM +R +DYGP + M++PYG GF +GH   G+F
Sbjct: 147 DDYVEPLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIF 206

Query: 190 D---AMGGYY---GGGGSGGPSA 205
           D   AMGGY      GG GGPS+
Sbjct: 207 DGATAMGGYMRDGSSGGGGGPSS 216

[Close]
BLAST of CSPI03G04280 vs. NCBI nr
Match: gi|823266462|ref|XP_012465928.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Gossypium raimondii])

HSP 1 Score: 233.0 bits (593), Expect = 4.7e-58
Identity = 128/198 (64.65%), Postives = 152/198 (76.77%), Query Frame = 1 

Query: 19  HHLSDGGTSI----GNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRIL 78
           H  S  G SI     ++S T+ +     AN+N     C+VREQDQYMP+ANVIRIM+RIL
Sbjct: 13  HAKSSSGLSIMHGDSSNSNTNTIINNNAANSNTMPPPCMVREQDQYMPIANVIRIMRRIL 72

Query: 79  PSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIE 138
           P+HAKISDD KETIQECVSEYISFIT EANERCQREQRKT+TAEDVLWAMGKLGFDDY+E
Sbjct: 73  PTHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVE 132

Query: 139 PLTVFLNRYRGSESDR--IRTEPMWRRNVDYGPQVGMISPYGQGFQIGHVPAGMFD---A 198
           PLTVFLNRYR +E++R  +R+EPM +R +DYGP + M++PYG GF +GH   G+FD   A
Sbjct: 133 PLTVFLNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATA 192

Query: 199 MGGYY---GGGGSGGPSA 205
           MGGY      GG GGPS+
Sbjct: 193 MGGYMRDGSSGGGGGPSS 208

The following BLAST results are available for this feature:
BLAST of CSPI03G04280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB9_ARATH4.6e-4556.59Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1... [more]
NFYB6_ARATH1.9e-4377.98Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1... [more]
NFYB2_ARATH4.4e-3247.77Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB7_ARATH5.8e-3250.83Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2... [more]
NFYB_MAIZE7.6e-3262.50Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
BLAST of CSPI03G04280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2U1_CUCSA1.2e-10395.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1[more]
A0A0A0L4W1_CUCSA2.0e-8481.90Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1[more]
A0A0B0PGM2_GOSAR8.6e-5963.55Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN... [more]
A0A0D2SEP9_GOSRA3.3e-5864.65Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1[more]
A0A0E3N6S2_GOSBA5.6e-5867.21Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1[more]
BLAST of CSPI03G04280 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21970.12.6e-4656.59 Histone superfamily protein[more]
AT5G47670.11.1e-4477.98 nuclear factor Y, subunit B6[more]
AT5G47640.12.5e-3347.77 nuclear factor Y, subunit B2[more]
AT2G13570.13.3e-3350.83 nuclear factor Y, subunit B7[more]
AT4G14540.15.6e-3361.62 nuclear factor Y, subunit B3[more]
BLAST of CSPI03G04280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200905|gb|KGN56038.1|1.7e-10395.22hypothetical protein Csa_3G049440 [Cucumis sativus][more]
gi|659096616|ref|XP_008449191.1|2.4e-10290.95PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo][more]
gi|700200906|gb|KGN56039.1|2.9e-8481.90hypothetical protein Csa_3G055940 [Cucumis sativus][more]
gi|728844156|gb|KHG23599.1|1.2e-5863.55Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum][more]
gi|823266462|ref|XP_012465928.1|4.7e-5864.65PREDICTED: nuclear transcription factor Y subunit B-9 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0033613 activating transcription factor binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G04280.1CSPI03G04280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 91..107
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 60..124
score: 7.2
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 48..150
score: 1.4
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 57..150
score: 5.97
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 126..144
score: 2.4E-16coord: 88..106
score: 2.4E-16coord: 107..125
score: 2.4
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 31..193
score: 1.8
NoneNo IPR availablePANTHERPTHR11064:SF20NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATEDcoord: 31..193
score: 1.8