CSPI03G01810 (gene) Wild cucumber (PI 183967)

NameCSPI03G01810
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionZinc finger, LSD1-type
LocationChr3 : 1270931 .. 1274258 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGATTTATTTATTCAACTTTTGTAATAATTTTATTTAGGTCCTACTGCTTACATTATGCATAACCCGCCTCCACTAATCTTTAGTGAGGCTTCACCCACCTCAAGATATGCCTTCAAGTCATTGGTGCTGATACTTTTGATCACTACTTGATAATCAGTTCATATACAGGGTGATATTTAAACGTTACAAATTATAGGCAAAATTTAGATCCATTTGAAAGCTGAAATATGTGTGGACTATCTTGTTAGTTTGTTAAGAAAGAAGAAGGCATATTATTATTATTATTTTTCTTTCTCCTTTTTCCTCCTACAATTGGCTTGTTTATCAGTGTCAACTTTTTTGGAGGGAGGGATTTTCCTTTCCAAAGTGGTTCTAAAGTCGAAGTTTTAACTCCTAAAAACCTACATTTACTGCAACCTGCGAAGGTATGCCGAGGTCATTGGTATTATCTCGTCCAGTTTTCTTTTGATTTCCTTTCATATGTTAGTCAGTTCATTGTTCTTTCACTAAGCAGTTCTTCCAAATCCAGATATGGTAGGAACGAAGACAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAGTGCCGTTTCCACCAGTTACTTGTATGACTACTCAACCCAAAGCTTCGAGTTCGGATATAATTTGAATTATTTTCCTGTTAGATCTGAGAACAAGTAACAAATTTCTAGTGTGAGATGGCTATTTTTGTTTGTATACAAGGCTAAGAAATTTTTAGTGCTAAGGTGACAAGCTCTCTACCAACACGAACAAAGAAATTTAGGGAGAAAATTTGATATTCATATAACTAAAGTTAGATCCTATATTTACGAAAATGACTAATGAATTGATTTCTCGTCATACATGCTATCTTTTAAGAATTGAAATTTGTTTGGGCAATAGGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGTTTGTTTCTGTATCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAAAAGGGCTGTGATTTCGTTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTGGGATTTCGCCTTAACTTTCATCCATCAATGAAATTGTTTATTATTGAAAAAATCAAAACCACAATTTCATAAATCATCATTATGGCCAAAGAGATAAGCTATACACTCAAATTGTTTTGAAGTGATAAGTTCAAATCTCATGGGAGGTTGAGCTTCATTGACTATCTGTGAGGATACTACCTAACCAGAATCAATATCTGAAATATATTGAGAATTAAAGAAGAACTACAATATAATCCAAGTTTACTCCACAAAATAGTCTCTCCTTCACTCACTCACCCTCATACTATTAATACACATCCAGTAACTAACTTTCCATCTAATGGCCAATATATCCCTTTTAACATACTAATATTCCTATCTGGGTACCTAATACCATCTTTGCGTCTATGGTCAATCTTGTTGGTTGCTTTCTCCTCTGATTATTGATTGAAGAAAGGGTGGAAGTAGTGAAGTTGCTACTAAATCTTGTGGAGTCTAGGTGGTTGAGTTTGCCTAGATATTCATAATTTTTAACAAAACAAATAAATCAATGATGATGGTGATTTGCAAGTTCCTATATGCTCGGAATTGTTTATAGTTAGGATATGATTGGTTTCGAATATGACCCTTAAGCAGGCTTAACGATGGCTCGGCTGGTGTGTAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGGGCGAAAAGTGTACAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTGAAGGTAAATTGTTACAACTAAATGTTTTCATATGCATAGTCTTTTATTGTTTTCATTAAAACTTCTGTGAAGAGTGAATGCTTATGTCATGTTTACCTGGGGATAGTTTTGATTTCTTGCCATCCAAATCGACCATCATTGAGCTATAGTACCACACCTTCAAAACCTTAGCTTTACTTTAAAACCACTCATCAAAAAGCCTATTTGTGATATCTTTTAACAAGGCGCCTAGAAAAACTACGCACACTTCCACTAAATTAAAGATCATCTGTAAAGAGGCAAACTTGTAGCGACTTAACTAGTGGCTAGAAGTCTGATCCTCACCTTTGTAGCATGAAGAATAAAGTTCTGGCAGATGACCAACCTGAATCTCTTAAATGGCTATCTTTATTGGCCTTTTCGTTAAGATTGAGTGTAGTGTATGGATGAACATTGCCAAAATGAATATAATTCAACTTTCATAAAATTTGTACTATCGACCTTAATTAAGGTTTGAGGTTCGAATCCTCCACTCCATACATTGTTAAAAGTAGAAAGTGAAAGGAAATGGGATAAACACTCATGTTGAAATGCTTTGAATATGTTATCTAGCTCTTTAAATGATCAAACACATGGACCATCTTTGTATTTTGTACTTTGTTGCTTCTCAAGATATAAAACAATTTCACTCCCTATCTGTGGATTTTAGTAACACACTATCAATGAACTACATACATTATCTGTTTTAATTTCTTCTTGTTTGATTCTTTGTTTGTCGGTTATATGTCACCACATGTCAAAATTATAATACTTCAGTTAGATATTACAGTAGTTCAGTTTTTAGGCTAGAGATAGTGTGAATTCAGGAAATTTGCATCTCCAATTATCATTGTTAATGGTTTGATTTAATCTAACCTCCTTAGAGTCTTATCAGATTGATTTTGAATTGTGGTAATTACAAACAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGTACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTTTAATTAGTTCATAATTTCCCCTCTTTGTTTCTCCATTCTCAAACTTCACAGCACTTTGGATTGTTAGAGATGAACCCTAAAAATCACAACCTTCTATAATGGTTTGGAATGAAAAATGCTTCTTTTAATGAAAAAGTTAAGATCCGGAATGTTTTCTAGATTGAAAGATTGAATCTTGACTTCAAAAGAGAGTGTGTGCCAATTATTGAGAGCTCTCAAGTCCACCTATTGTAAAAG

mRNA sequence

ATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGTTTGTTTCTGTATCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAAAAGGGCTGTGATTTCGTTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTGGGATTTCGCCTTAACTTTCATCCATCAATGA

Coding sequence (CDS)

ATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGTTTGTTTCTGTATCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAAAAGGGCTGTGATTTCGTTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTGGGATTTCGCCTTAACTTTCATCCATCAATGA
BLAST of CSPI03G01810 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 34
          +CSGC+NLL+YP GATS+CCA+C+AVT VP  G
Sbjct: 36 VCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPG 68

BLAST of CSPI03G01810 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 34
          +CSGC+NLL+YPAGATS+CCA+C  VT VP  G
Sbjct: 67 VCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPG 99

BLAST of CSPI03G01810 vs. Swiss-Prot
Match: LOL1_ORYSJ (Protein LOL1 OS=Oryza sativa subsp. japonica GN=LOL1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.2e-07
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVP 31
          +CSGC+NLL+YPAGATSICCA+C  VT VP
Sbjct: 49 VCSGCRNLLMYPAGATSICCAVCGTVTAVP 78

BLAST of CSPI03G01810 vs. TrEMBL
Match: A0A0A0L592_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011780 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTS 33
          MCSGCKNLLIYPAGATSICCALCHAVTPVPTS
Sbjct: 50 MCSGCKNLLIYPAGATSICCALCHAVTPVPTS 81

BLAST of CSPI03G01810 vs. TrEMBL
Match: A0A0K9NL78_ZOSMR (Protein LSD1 OS=Zostera marina GN=ZOSMA_85G00880 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 34
          +CSGC+NLL+YP GATS+CCA+C+AVTPVP  G
Sbjct: 26 VCSGCRNLLLYPNGATSVCCAVCNAVTPVPPPG 58

BLAST of CSPI03G01810 vs. TrEMBL
Match: G3MR56_9ACAR (Uncharacterized protein OS=Amblyomma maculatum PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 34
          +CSGC+NLL+YP GA+S+CCA+C+AVTPVP  G
Sbjct: 27 VCSGCRNLLLYPLGASSVCCAICNAVTPVPPPG 59

BLAST of CSPI03G01810 vs. TrEMBL
Match: B9SQI0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0590490 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 34
          +CSGC+NLL+YPAGATS+CCA+C+AVT VP  G
Sbjct: 29 VCSGCRNLLLYPAGATSVCCAVCNAVTAVPPPG 61

BLAST of CSPI03G01810 vs. TrEMBL
Match: A0A0E3TFF5_FAGTA (LOL1 OS=Fagopyrum tataricum PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 34
          +CSGC+NLL+YPAGATS+CCA+C+AVT VP  G
Sbjct: 27 VCSGCRNLLLYPAGATSVCCAVCNAVTAVPPPG 59

BLAST of CSPI03G01810 vs. TAIR10
Match: AT1G32540.1 (AT1G32540.1 lsd one like 1)

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-09
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1

Query: 1   MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG 34
           +CSGC+NLL+YP GATS+CCA+C+AVT VP  G
Sbjct: 69  VCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPG 101

BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|778675089|ref|XP_011650348.1| (PREDICTED: protein LSD1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL 35
          MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
Sbjct: 14 MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL 47

BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|778675086|ref|XP_011650347.1| (PREDICTED: protein LSD1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL 35
          MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
Sbjct: 14 MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL 47

BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|659095665|ref|XP_008448702.1| (PREDICTED: protein LOL1 isoform X1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL 35
          MCSGCKN+LIYPAGATSICCALCHAVTPVPTSGL
Sbjct: 64 MCSGCKNMLIYPAGATSICCALCHAVTPVPTSGL 97

BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|659095667|ref|XP_008448703.1| (PREDICTED: protein LOL1 isoform X2 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL 35
          MCSGCKN+LIYPAGATSICCALCHAVTPVPTSGL
Sbjct: 64 MCSGCKNMLIYPAGATSICCALCHAVTPVPTSGL 97

BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|700200644|gb|KGN55777.1| (hypothetical protein Csa_3G011780 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 7.9e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1

Query: 1  MCSGCKNLLIYPAGATSICCALCHAVTPVPTS 33
          MCSGCKNLLIYPAGATSICCALCHAVTPVPTS
Sbjct: 50 MCSGCKNLLIYPAGATSICCALCHAVTPVPTS 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LOL1_ARATH1.3e-0769.70Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1[more]
LSD1_ORYSJ1.6e-0769.70Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1[more]
LOL1_ORYSJ8.2e-0776.67Protein LOL1 OS=Oryza sativa subsp. japonica GN=LOL1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L592_CUCSA5.5e-10100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011780 PE=4 SV=1[more]
A0A0K9NL78_ZOSMR2.2e-0672.73Protein LSD1 OS=Zostera marina GN=ZOSMA_85G00880 PE=4 SV=1[more]
G3MR56_9ACAR3.7e-0669.70Uncharacterized protein OS=Amblyomma maculatum PE=2 SV=1[more]
B9SQI0_RICCO3.7e-0672.73Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0590490 PE=4 SV=1[more]
A0A0E3TFF5_FAGTA3.7e-0672.73LOL1 OS=Fagopyrum tataricum PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT1G32540.17.1e-0969.70 lsd one like 1[more]
Match NameE-valueIdentityDescription
gi|778675089|ref|XP_011650348.1|5.5e-11100.00PREDICTED: protein LSD1-like isoform X2 [Cucumis sativus][more]
gi|778675086|ref|XP_011650347.1|5.5e-11100.00PREDICTED: protein LSD1-like isoform X1 [Cucumis sativus][more]
gi|659095665|ref|XP_008448702.1|9.3e-1197.06PREDICTED: protein LOL1 isoform X1 [Cucumis melo][more]
gi|659095667|ref|XP_008448703.1|9.3e-1197.06PREDICTED: protein LOL1 isoform X2 [Cucumis melo][more]
gi|700200644|gb|KGN55777.1|7.9e-10100.00hypothetical protein Csa_3G011780 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005735Znf_LSD1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007275 multicellular organism development
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004725 protein tyrosine phosphatase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G01810.1CSPI03G01810.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005735Zinc finger, LSD1-typePFAMPF06943zf-LSD1coord: 2..26
score: 1.8
IPR005735Zinc finger, LSD1-typeTIGRFAMsTIGR01053TIGR01053coord: 2..28
score: 4.0
NoneNo IPR availablePANTHERPTHR31747FAMILY NOT NAMEDcoord: 1..30
score: 4.5
NoneNo IPR availablePANTHERPTHR31747:SF3PROTEIN LSD1coord: 1..30
score: 4.5

The following gene(s) are paralogous to this gene:

None