CSPI03G01810 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGATTTATTTATTCAACTTTTGTAATAATTTTATTTAGGTCCTACTGCTTACATTATGCATAACCCGCCTCCACTAATCTTTAGTGAGGCTTCACCCACCTCAAGATATGCCTTCAAGTCATTGGTGCTGATACTTTTGATCACTACTTGATAATCAGTTCATATACAGGGTGATATTTAAACGTTACAAATTATAGGCAAAATTTAGATCCATTTGAAAGCTGAAATATGTGTGGACTATCTTGTTAGTTTGTTAAGAAAGAAGAAGGCATATTATTATTATTATTTTTCTTTCTCCTTTTTCCTCCTACAATTGGCTTGTTTATCAGTGTCAACTTTTTTGGAGGGAGGGATTTTCCTTTCCAAAGTGGTTCTAAAGTCGAAGTTTTAACTCCTAAAAACCTACATTTACTGCAACCTGCGAAGGTATGCCGAGGTCATTGGTATTATCTCGTCCAGTTTTCTTTTGATTTCCTTTCATATGTTAGTCAGTTCATTGTTCTTTCACTAAGCAGTTCTTCCAAATCCAGATATGGTAGGAACGAAGACAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAGTGCCGTTTCCACCAGTTACTTGTATGACTACTCAACCCAAAGCTTCGAGTTCGGATATAATTTGAATTATTTTCCTGTTAGATCTGAGAACAAGTAACAAATTTCTAGTGTGAGATGGCTATTTTTGTTTGTATACAAGGCTAAGAAATTTTTAGTGCTAAGGTGACAAGCTCTCTACCAACACGAACAAAGAAATTTAGGGAGAAAATTTGATATTCATATAACTAAAGTTAGATCCTATATTTACGAAAATGACTAATGAATTGATTTCTCGTCATACATGCTATCTTTTAAGAATTGAAATTTGTTTGGGCAATAGGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGTTTGTTTCTGTATCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAAAAGGGCTGTGATTTCGTTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTGGGATTTCGCCTTAACTTTCATCCATCAATGAAATTGTTTATTATTGAAAAAATCAAAACCACAATTTCATAAATCATCATTATGGCCAAAGAGATAAGCTATACACTCAAATTGTTTTGAAGTGATAAGTTCAAATCTCATGGGAGGTTGAGCTTCATTGACTATCTGTGAGGATACTACCTAACCAGAATCAATATCTGAAATATATTGAGAATTAAAGAAGAACTACAATATAATCCAAGTTTACTCCACAAAATAGTCTCTCCTTCACTCACTCACCCTCATACTATTAATACACATCCAGTAACTAACTTTCCATCTAATGGCCAATATATCCCTTTTAACATACTAATATTCCTATCTGGGTACCTAATACCATCTTTGCGTCTATGGTCAATCTTGTTGGTTGCTTTCTCCTCTGATTATTGATTGAAGAAAGGGTGGAAGTAGTGAAGTTGCTACTAAATCTTGTGGAGTCTAGGTGGTTGAGTTTGCCTAGATATTCATAATTTTTAACAAAACAAATAAATCAATGATGATGGTGATTTGCAAGTTCCTATATGCTCGGAATTGTTTATAGTTAGGATATGATTGGTTTCGAATATGACCCTTAAGCAGGCTTAACGATGGCTCGGCTGGTGTGTAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGGGCGAAAAGTGTACAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTGAAGGTAAATTGTTACAACTAAATGTTTTCATATGCATAGTCTTTTATTGTTTTCATTAAAACTTCTGTGAAGAGTGAATGCTTATGTCATGTTTACCTGGGGATAGTTTTGATTTCTTGCCATCCAAATCGACCATCATTGAGCTATAGTACCACACCTTCAAAACCTTAGCTTTACTTTAAAACCACTCATCAAAAAGCCTATTTGTGATATCTTTTAACAAGGCGCCTAGAAAAACTACGCACACTTCCACTAAATTAAAGATCATCTGTAAAGAGGCAAACTTGTAGCGACTTAACTAGTGGCTAGAAGTCTGATCCTCACCTTTGTAGCATGAAGAATAAAGTTCTGGCAGATGACCAACCTGAATCTCTTAAATGGCTATCTTTATTGGCCTTTTCGTTAAGATTGAGTGTAGTGTATGGATGAACATTGCCAAAATGAATATAATTCAACTTTCATAAAATTTGTACTATCGACCTTAATTAAGGTTTGAGGTTCGAATCCTCCACTCCATACATTGTTAAAAGTAGAAAGTGAAAGGAAATGGGATAAACACTCATGTTGAAATGCTTTGAATATGTTATCTAGCTCTTTAAATGATCAAACACATGGACCATCTTTGTATTTTGTACTTTGTTGCTTCTCAAGATATAAAACAATTTCACTCCCTATCTGTGGATTTTAGTAACACACTATCAATGAACTACATACATTATCTGTTTTAATTTCTTCTTGTTTGATTCTTTGTTTGTCGGTTATATGTCACCACATGTCAAAATTATAATACTTCAGTTAGATATTACAGTAGTTCAGTTTTTAGGCTAGAGATAGTGTGAATTCAGGAAATTTGCATCTCCAATTATCATTGTTAATGGTTTGATTTAATCTAACCTCCTTAGAGTCTTATCAGATTGATTTTGAATTGTGGTAATTACAAACAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGTACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTTTAATTAGTTCATAATTTCCCCTCTTTGTTTCTCCATTCTCAAACTTCACAGCACTTTGGATTGTTAGAGATGAACCCTAAAAATCACAACCTTCTATAATGGTTTGGAATGAAAAATGCTTCTTTTAATGAAAAAGTTAAGATCCGGAATGTTTTCTAGATTGAAAGATTGAATCTTGACTTCAAAAGAGAGTGTGTGCCAATTATTGAGAGCTCTCAAGTCCACCTATTGTAAAAG ATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGTTTGTTTCTGTATCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAAAAGGGCTGTGATTTCGTTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTGGGATTTCGCCTTAACTTTCATCCATCAATGA ATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGTTTGTTTCTGTATCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAAAAGGGCTGTGATTTCGTTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTGGGATTTCGCCTTAACTTTCATCCATCAATGA
BLAST of CSPI03G01810 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07 Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1
BLAST of CSPI03G01810 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07 Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1
BLAST of CSPI03G01810 vs. Swiss-Prot
Match: LOL1_ORYSJ (Protein LOL1 OS=Oryza sativa subsp. japonica GN=LOL1 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 8.2e-07 Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1
BLAST of CSPI03G01810 vs. TrEMBL
Match: A0A0A0L592_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011780 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 5.5e-10 Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1
BLAST of CSPI03G01810 vs. TrEMBL
Match: A0A0K9NL78_ZOSMR (Protein LSD1 OS=Zostera marina GN=ZOSMA_85G00880 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06 Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1
BLAST of CSPI03G01810 vs. TrEMBL
Match: G3MR56_9ACAR (Uncharacterized protein OS=Amblyomma maculatum PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06 Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1
BLAST of CSPI03G01810 vs. TrEMBL
Match: B9SQI0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0590490 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06 Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1
BLAST of CSPI03G01810 vs. TrEMBL
Match: A0A0E3TFF5_FAGTA (LOL1 OS=Fagopyrum tataricum PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06 Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1
BLAST of CSPI03G01810 vs. TAIR10
Match: AT1G32540.1 (AT1G32540.1 lsd one like 1) HSP 1 Score: 57.4 bits (137), Expect = 7.1e-09 Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1
BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|778675089|ref|XP_011650348.1| (PREDICTED: protein LSD1-like isoform X2 [Cucumis sativus]) HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1
BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|778675086|ref|XP_011650347.1| (PREDICTED: protein LSD1-like isoform X1 [Cucumis sativus]) HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1
BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|659095665|ref|XP_008448702.1| (PREDICTED: protein LOL1 isoform X1 [Cucumis melo]) HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|659095667|ref|XP_008448703.1| (PREDICTED: protein LOL1 isoform X2 [Cucumis melo]) HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
BLAST of CSPI03G01810 vs. NCBI nr
Match: gi|700200644|gb|KGN55777.1| (hypothetical protein Csa_3G011780 [Cucumis sativus]) HSP 1 Score: 72.0 bits (175), Expect = 7.9e-10 Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |