CSPI03G00200 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G00200
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 174664 .. 174894 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCGCGCTAGCGGCGTCCTGGTACCGGGAAAGTTCTTAATTACGATTTACGGCAGTATGCTCTAAATACGACACTCGGCACGGCCATTTTTTCATTCACTGCGGCGGAGCACAGTCGTCTCGAAAAGAGGTTGGCATCAGACTGAATACGGGTCCATTGGCATATGAGCCTGCACCGCCACATCGGGAAGAAGAGTTTGGCTGTGGATGCTGTGCTAACATGTGA

mRNA sequence

ATGTCGTCCGCGCTAGCGGCGTCCTGGTACCGGGAAATATGCTCTAAATACGACACTCGGCACGGCCATTTTTTCATTCACTGCGGCGGAGCACAGTCGTCTCGAAAAGAGGTTGGCATCAGACTGAATACGGGTCCATTGGCATATGAGCCTGCACCGCCACATCGGGAAGAAGAGTTTGGCTGTGGATGCTGTGCTAACATGTGA

Coding sequence (CDS)

ATGTCGTCCGCGCTAGCGGCGTCCTGGTACCGGGAAATATGCTCTAAATACGACACTCGGCACGGCCATTTTTTCATTCACTGCGGCGGAGCACAGTCGTCTCGAAAAGAGGTTGGCATCAGACTGAATACGGGTCCATTGGCATATGAGCCTGCACCGCCACATCGGGAAGAAGAGTTTGGCTGTGGATGCTGTGCTAACATGTGA
Homology
[Close]
BLAST of CSPI03G00200 vs. TrEMBL
Match: A0A0A0L4T0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000700 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MSSALAASWYREICSKYDTRHGHFFIHCGGAQSSRKEVGIRLNTGPLAYEPAPPHREEEF 60
          MSSALAASWYREICSKYDTRHGHFFIHCGGAQSSRKEVGIRLNTGPLAYEPAPPHREEEF
Sbjct: 1  MSSALAASWYREICSKYDTRHGHFFIHCGGAQSSRKEVGIRLNTGPLAYEPAPPHREEEF 60

Query: 61 GCGCCANM 69
          GCGCCANM
Sbjct: 61 GCGCCANM 68

[Close]
BLAST of CSPI03G00200 vs. NCBI nr
Match: gi|700200464|gb|KGN55597.1| (hypothetical protein Csa_3G000700 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-35
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MSSALAASWYREICSKYDTRHGHFFIHCGGAQSSRKEVGIRLNTGPLAYEPAPPHREEEF 60
          MSSALAASWYREICSKYDTRHGHFFIHCGGAQSSRKEVGIRLNTGPLAYEPAPPHREEEF
Sbjct: 1  MSSALAASWYREICSKYDTRHGHFFIHCGGAQSSRKEVGIRLNTGPLAYEPAPPHREEEF 60

Query: 61 GCGCCANM 69
          GCGCCANM
Sbjct: 61 GCGCCANM 68

The following BLAST results are available for this feature:
BLAST of CSPI03G00200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G00200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4T0_CUCSA1.7e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000700 PE=4 SV=1[more]
BLAST of CSPI03G00200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G00200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200464|gb|KGN55597.1|2.4e-35100.00hypothetical protein Csa_3G000700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006298 mismatch repair
biological_process GO:0007131 reciprocal meiotic recombination
cellular_component GO:0005575 cellular_component
cellular_component GO:0032300 mismatch repair complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G00200.1CSPI03G00200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G00200Csa3G000700Cucumber (Chinese Long) v2cpicuB120
CSPI03G00200CsGy3G000170Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G00200Wild cucumber (PI 183967)cpicpiB133
CSPI03G00200Cucumber (Gy14) v1cgycpiB025
CSPI03G00200Cucumber (Gy14) v1cgycpiB484
CSPI03G00200Cucurbita maxima (Rimu)cmacpiB332
CSPI03G00200Cucurbita maxima (Rimu)cmacpiB666
CSPI03G00200Cucurbita maxima (Rimu)cmacpiB840
CSPI03G00200Cucurbita maxima (Rimu)cmacpiB871
CSPI03G00200Cucurbita moschata (Rifu)cmocpiB323
CSPI03G00200Cucurbita moschata (Rifu)cmocpiB658
CSPI03G00200Cucurbita moschata (Rifu)cmocpiB825
CSPI03G00200Cucurbita moschata (Rifu)cmocpiB852
CSPI03G00200Cucumber (Chinese Long) v2cpicuB156
CSPI03G00200Melon (DHL92) v3.5.1cpimeB240
CSPI03G00200Melon (DHL92) v3.5.1cpimeB258
CSPI03G00200Watermelon (Charleston Gray)cpiwcgB190
CSPI03G00200Watermelon (Charleston Gray)cpiwcgB212
CSPI03G00200Watermelon (97103) v1cpiwmB200
CSPI03G00200Watermelon (97103) v1cpiwmB262
CSPI03G00200Cucurbita pepo (Zucchini)cpecpiB064
CSPI03G00200Cucurbita pepo (Zucchini)cpecpiB215
CSPI03G00200Cucurbita pepo (Zucchini)cpecpiB485
CSPI03G00200Cucurbita pepo (Zucchini)cpecpiB557
CSPI03G00200Cucurbita pepo (Zucchini)cpecpiB853
CSPI03G00200Bottle gourd (USVL1VR-Ls)cpilsiB164
CSPI03G00200Bottle gourd (USVL1VR-Ls)cpilsiB227
CSPI03G00200Melon (DHL92) v3.6.1cpimedB225
CSPI03G00200Melon (DHL92) v3.6.1cpimedB254
CSPI03G00200Cucumber (Gy14) v2cgybcpiB272
CSPI03G00200Silver-seed gourdcarcpiB0179
CSPI03G00200Silver-seed gourdcarcpiB0441
CSPI03G00200Silver-seed gourdcarcpiB0467
CSPI03G00200Silver-seed gourdcarcpiB0671
CSPI03G00200Cucumber (Chinese Long) v3cpicucB144
CSPI03G00200Cucumber (Chinese Long) v3cpicucB184
CSPI03G00200Watermelon (97103) v2cpiwmbB182
CSPI03G00200Watermelon (97103) v2cpiwmbB184
CSPI03G00200Wax gourdcpiwgoB246
CSPI03G00200Wax gourdcpiwgoB329