CSPI02G27900 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G27900
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 23885488 .. 23885955 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAGGAGAAAATATCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAGGAGAAAATATCGAAGAATATGGAGAAGAAGAAAATACCAAAGAATATGGAGAAGGGAGAAAATTGTGGAGTAATAACGGTGAAGATGGAGAAGATGGAGAAGGAGAAAATCGTACCCATTTTAAACCGAGGGTAA

mRNA sequence

ATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAGGAGAAAATATCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAGGAGAAAATATCGAAGAATATGGAGAAGAAGAAAATACCAAAGAATATGGAGAAGGGAGAAAATTGTGGAGTAATAACGGTGAAGATGGAGAAGATGGAGAAGGAGAAAATCGTACCCATTTTAAACCGAGGGTAA

Coding sequence (CDS)

ATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAGGAGAAAATATCGAAGAATATGGAGAAAGAGAAAATACCGAAGAATATGGAGAAGGAGAAAATATCGAAGAATATGGAGAAGAAGAAAATACCAAAGAATATGGAGAAGGGAGAAAATTGTGGAGTAATAACGGTGAAGATGGAGAAGATGGAGAAGGAGAAAATCGTACCCATTTTAAACCGAGGGTAA

Homology

[Close]

BLAST of CSPI02G27900 vs. TrEMBL
Match: A0A0L1IAB6_PLAFA (Uncharacterized protein OS=Plasmodium falciparum IGH-CR14 GN=PFMG_02693 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-09
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1


Query: 2   EKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIP 61
           EK+K P N +K+K P + EK+K P + EK+K P N +K+K P + EK+K P + EK+K P
Sbjct: 58  EKKKTPNNADKKKTPNDAEKKKTPNDAEKKKTPNNADKKKTPNDAEKKKTPNDSEKKKTP 117

Query: 62  KNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKK 121
            + EK+K P + EK+K P + EK+K P +   +K SK   KE+ P    KEK      K+
Sbjct: 118 NDAEKKKNPNDAEKKKNPNDAEKKKNPNDANTKKASKGANKERTPNGANKEKTPNGANKE 177

Query: 122 KIPKNMEKGEN 133
           K P N EK +N
Sbjct: 178 KTPNNAEKKKN 188

[Close]

BLAST of CSPI02G27900 vs. TrEMBL
Match: A0A0L7LY45_PLAF4 (Uncharacterized protein (Fragment) OS=Plasmodium falciparum (isolate Dd2) GN=PFDG_00983 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 1


Query: 2   EKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIP 61
           EK+K P N +K+K P + EK+K P + EK+K P N +K+K      KE+ P N EK+K P
Sbjct: 162 EKKKTPNNADKKKTPNDAEKKKTPNDAEKKKTPNNADKKKTSNGANKERTPNNAEKKKNP 221

Query: 62  KNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKK 121
            +   +K      KE+ P    KEK P + EK+K      KEK P + EK+K   + EKK
Sbjct: 222 NDANTKKASNGANKERTPNGANKEKTPNDAEKKKTPNGANKEKTPNDAEKKKTPNDSEKK 281

Query: 122 KIPKNMEKGENCGVITVKMEKMEKEKI 149
           K P + EK +N      K    + EKI
Sbjct: 282 KTPNDAEKKKNPNDAEKKKNPNDAEKI 308

[Close]

BLAST of CSPI02G27900 vs. TrEMBL
Match: A0A0L0CXZ6_PLAFA (Uncharacterized protein OS=Plasmodium falciparum RAJ116 GN=PFLG_02285 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-07
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 3   KEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPK 62
           KEK P + EK+K P    KEK P + EK+K P    KEK P + EK+K P + EK+K P 
Sbjct: 188 KEKTPNDAEKKKTPNGANKEKTPNDAEKKKTPNGANKEKTPNDAEKKKNPNDAEKKKNPN 247

Query: 63  NMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKKK 122
           + EK+K P +   +K      KE+ P N EK+K   + EK+K P + EK+K   + EKKK
Sbjct: 248 DAEKKKNPNDANTKKASNGANKERTPNNAEKKKTPNDSEKKKTPNDAEKKKNPNDAEKKK 307

Query: 123 IPKNMEKGEN 133
            P + EK +N
Sbjct: 308 NPNDAEKKKN 317

[Close]

BLAST of CSPI02G27900 vs. TrEMBL
Match: Q8IKG1_PLAF7 (Uncharacterized protein OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0644 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.4e-07
Identity = 56/146 (38.36%), Postives = 78/146 (53.42%), Query Frame = 1


Query: 2   EKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIP 61
           EK+K P N +K+K P + EK+K P + EK+K P N +K+K      KE+ P N EK+K P
Sbjct: 562 EKKKTPNNADKKKTPNDAEKKKTPNDAEKKKTPNNADKKKTSNGANKERTPNNAEKKKNP 621

Query: 62  KNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKK 121
            +   +K      KE+ P    KEK P + EK+K      KEK P + EK+K   + EKK
Sbjct: 622 NDANTKKASNGANKERTPNGANKEKTPNDAEKKKTPNGANKEKTPNDAEKKKTPNDSEKK 681

Query: 122 KIPKNMEKGENCGVITVKMEKMEKEK 148
           K P + EK +N      K    + EK
Sbjct: 682 KTPNDAEKKKNPNDAEKKKNPNDAEK 707

[Close]

BLAST of CSPI02G27900 vs. TrEMBL
Match: A0A144A2Q6_PLAF7 (Uncharacterized protein OS=Plasmodium falciparum (isolate 3D7) GN=PF3D7_1467600 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.4e-07
Identity = 56/146 (38.36%), Postives = 78/146 (53.42%), Query Frame = 1


Query: 2   EKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIP 61
           EK+K P N +K+K P + EK+K P + EK+K P N +K+K      KE+ P N EK+K P
Sbjct: 562 EKKKTPNNADKKKTPNDAEKKKTPNDAEKKKTPNNADKKKTSNGANKERTPNNAEKKKNP 621

Query: 62  KNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKK 121
            +   +K      KE+ P    KEK P + EK+K      KEK P + EK+K   + EKK
Sbjct: 622 NDANTKKASNGANKERTPNGANKEKTPNDAEKKKTPNGANKEKTPNDAEKKKTPNDSEKK 681

Query: 122 KIPKNMEKGENCGVITVKMEKMEKEK 148
           K P + EK +N      K    + EK
Sbjct: 682 KTPNDAEKKKNPNDAEKKKNPNDAEK 707

[Close]

BLAST of CSPI02G27900 vs. NCBI nr
Match: gi|910272892|gb|KNG76427.1| (hypothetical protein PFMG_02693 [Plasmodium falciparum IGH-CR14])

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-09
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1


Query: 2   EKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIP 61
           EK+K P N +K+K P + EK+K P + EK+K P N +K+K P + EK+K P + EK+K P
Sbjct: 58  EKKKTPNNADKKKTPNDAEKKKTPNDAEKKKTPNNADKKKTPNDAEKKKTPNDSEKKKTP 117

Query: 62  KNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKK 121
            + EK+K P + EK+K P + EK+K P +   +K SK   KE+ P    KEK      K+
Sbjct: 118 NDAEKKKNPNDAEKKKNPNDAEKKKNPNDANTKKASKGANKERTPNGANKEKTPNGANKE 177

Query: 122 KIPKNMEKGEN 133
           K P N EK +N
Sbjct: 178 KTPNNAEKKKN 188

[Close]

BLAST of CSPI02G27900 vs. NCBI nr
Match: gi|914579117|gb|KOB85539.1| (hypothetical protein PFDG_00983, partial [Plasmodium falciparum Dd2])

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 1


Query: 2   EKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIP 61
           EK+K P N +K+K P + EK+K P + EK+K P N +K+K      KE+ P N EK+K P
Sbjct: 162 EKKKTPNNADKKKTPNDAEKKKTPNDAEKKKTPNNADKKKTSNGANKERTPNNAEKKKNP 221

Query: 62  KNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKK 121
            +   +K      KE+ P    KEK P + EK+K      KEK P + EK+K   + EKK
Sbjct: 222 NDANTKKASNGANKERTPNGANKEKTPNDAEKKKTPNGANKEKTPNDAEKKKTPNDSEKK 281

Query: 122 KIPKNMEKGENCGVITVKMEKMEKEKI 149
           K P + EK +N      K    + EKI
Sbjct: 282 KTPNDAEKKKNPNDAEKKKNPNDAEKI 308

[Close]

BLAST of CSPI02G27900 vs. NCBI nr
Match: gi|906524489|gb|KNC37081.1| (hypothetical protein PFLG_02285 [Plasmodium falciparum RAJ116])

HSP 1 Score: 62.4 bits (150), Expect = 8.1e-07
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 3   KEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPK 62
           KEK P + EK+K P    KEK P + EK+K P    KEK P + EK+K P + EK+K P 
Sbjct: 188 KEKTPNDAEKKKTPNGANKEKTPNDAEKKKTPNGANKEKTPNDAEKKKNPNDAEKKKNPN 247

Query: 63  NMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKKK 122
           + EK+K P +   +K      KE+ P N EK+K   + EK+K P + EK+K   + EKKK
Sbjct: 248 DAEKKKNPNDANTKKASNGANKERTPNNAEKKKTPNDSEKKKTPNDAEKKKNPNDAEKKK 307

Query: 123 IPKNMEKGEN 133
            P + EK +N
Sbjct: 308 NPNDAEKKKN 317

[Close]

BLAST of CSPI02G27900 vs. NCBI nr
Match: gi|124810268|ref|XP_001348818.1| (conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 56/146 (38.36%), Postives = 78/146 (53.42%), Query Frame = 1


Query: 2   EKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIP 61
           EK+K P N +K+K P + EK+K P + EK+K P N +K+K      KE+ P N EK+K P
Sbjct: 562 EKKKTPNNADKKKTPNDAEKKKTPNDAEKKKTPNNADKKKTSNGANKERTPNNAEKKKNP 621

Query: 62  KNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKK 121
            +   +K      KE+ P    KEK P + EK+K      KEK P + EK+K   + EKK
Sbjct: 622 NDANTKKASNGANKERTPNGANKEKTPNDAEKKKTPNGANKEKTPNDAEKKKTPNDSEKK 681

Query: 122 KIPKNMEKGENCGVITVKMEKMEKEK 148
           K P + EK +N      K    + EK
Sbjct: 682 KTPNDAEKKKNPNDAEKKKNPNDAEK 707

[Close]

BLAST of CSPI02G27900 vs. NCBI nr
Match: gi|1016053062|emb|CZU00373.1| (conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 56/146 (38.36%), Postives = 78/146 (53.42%), Query Frame = 1


Query: 2   EKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKIP 61
           EK+K P N +K+K P + EK+K P + EK+K P N +K+K      KE+ P N EK+K P
Sbjct: 562 EKKKTPNNADKKKTPNDAEKKKTPNDAEKKKTPNNADKKKTSNGANKERTPNNAEKKKNP 621

Query: 62  KNMEKEKIPKNMEKEKIPKNMEKEKIPKNMEKEKISKNMEKEKIPKNMEKEKISKNMEKK 121
            +   +K      KE+ P    KEK P + EK+K      KEK P + EK+K   + EKK
Sbjct: 622 NDANTKKASNGANKERTPNGANKEKTPNDAEKKKTPNGANKEKTPNDAEKKKTPNDSEKK 681

Query: 122 KIPKNMEKGENCGVITVKMEKMEKEK 148
           K P + EK +N      K    + EK
Sbjct: 682 KTPNDAEKKKNPNDAEKKKNPNDAEK 707

The following BLAST results are available for this feature:

BLAST of CSPI02G27900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G27900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L1IAB6_PLAFA	6.1e-09	42.75	Uncharacterized protein OS=Plasmodium falciparum IGH-CR14 GN=PFMG_02693 PE=4 SV=...	[more]
A0A0L7LY45_PLAF4	1.9e-07	38.78	Uncharacterized protein (Fragment) OS=Plasmodium falciparum (isolate Dd2) GN=PFD...	[more]
A0A0L0CXZ6_PLAFA	5.7e-07	42.31	Uncharacterized protein OS=Plasmodium falciparum RAJ116 GN=PFLG_02285 PE=4 SV=1	[more]
Q8IKG1_PLAF7	7.4e-07	38.36	Uncharacterized protein OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0644 PE=4...	[more]
A0A144A2Q6_PLAF7	7.4e-07	38.36	Uncharacterized protein OS=Plasmodium falciparum (isolate 3D7) GN=PF3D7_1467600 ...	[more]

BLAST of CSPI02G27900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G27900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|910272892\|gb\|KNG76427.1\|	8.7e-09	42.75	hypothetical protein PFMG_02693 [Plasmodium falciparum IGH-CR14]	[more]
gi\|914579117\|gb\|KOB85539.1\|	2.8e-07	38.78	hypothetical protein PFDG_00983, partial [Plasmodium falciparum Dd2]	[more]
gi\|906524489\|gb\|KNC37081.1\|	8.1e-07	42.31	hypothetical protein PFLG_02285 [Plasmodium falciparum RAJ116]	[more]
gi\|124810268\|ref\|XP_001348818.1\|	1.1e-06	38.36	conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7]	[more]
gi\|1016053062\|emb\|CZU00373.1\|	1.1e-06	38.36	conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G27900.1	CSPI02G27900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G27900	Melon (DHL92) v3.6.1	cpimedB084
CSPI02G27900	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G27900	Silver-seed gourd	carcpiB0832
CSPI02G27900	Silver-seed gourd	carcpiB1089
CSPI02G27900	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G27900	Watermelon (97103) v2	cpiwmbB170
CSPI02G27900	Cucumber (Gy14) v1	cgycpiB481
CSPI02G27900	Cucurbita maxima (Rimu)	cmacpiB549
CSPI02G27900	Cucurbita maxima (Rimu)	cmacpiB595
CSPI02G27900	Cucurbita moschata (Rifu)	cmocpiB538
CSPI02G27900	Cucurbita moschata (Rifu)	cmocpiB584
CSPI02G27900	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G27900	Melon (DHL92) v3.5.1	cpimeB093
CSPI02G27900	Watermelon (Charleston Gray)	cpiwcgB098
CSPI02G27900	Cucurbita pepo (Zucchini)	cpecpiB272
CSPI02G27900	Cucurbita pepo (Zucchini)	cpecpiB708
CSPI02G27900	Bottle gourd (USVL1VR-Ls)	cpilsiB092