CSPI02G25550 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G25550
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProtein of unknown function (DUF 3339)
LocationChr2 : 21709890 .. 21710643 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCCACTTATGAAAAAACAAAAAAAGAAAACATGTGAATCTGAATAACTTCATTCACTAAGCTTCAACTTTCCAAGTCATCCCTCCACCATAATTTTGTCCTTTTCTTCACCGCTATTAACACCTTAGCTTCCATTGCTTTTGATATGTTCCTGATCGTCTCTCTGTTGGTTTGTTGTTGAGAGGGAGAGGTACTATCGAGAAAGATCAATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAATTTCACATCTTTCTCTCTATTTTTTTTCTTTCTTTCCCTTAAATCTGATTGTCTTTTGTCTTTAAACTTGTTTTGTATCCATTTTTTTTCTCAATCTCCTTTGATTTGTTAATAAGTATGTGTGGGTTTGTCATCTTTGAAGATGAGGAATTGGTATATAGCATCATTCTCTTAACTTTCTCTTCTATGTTTTTGAGGAATTTGATTCTTCAAATCTATCAATCCCATCCCATCACATCACATGTGCAAACATATATTTCGTCATGACAAAAAAAACTTTTTATCAATATTTTCAAAATATTTACGAATACGATAAAATTGATACACTATT

mRNA sequence

ATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAA

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAA
Homology
[Close]
BLAST of CSPI02G25550 vs. TrEMBL
Match: A0A061EEJ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-26
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSRF+EFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

[Close]
BLAST of CSPI02G25550 vs. TrEMBL
Match: A0A059APQ4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01640 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.2e-26
Identity = 58/70 (82.86%), Postives = 67/70 (95.71%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVA++LFVLLTPGLL+Q+PGK RF+EFGNFQTSG S+LVHSILYFAL+CIFLL
Sbjct: 1  MSDWGPVFVAMVLFVLLTPGLLIQIPGKHRFIEFGNFQTSGASVLVHSILYFALVCIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVY+GS
Sbjct: 61 AVGVHVYIGS 70

[Close]
BLAST of CSPI02G25550 vs. TrEMBL
Match: W9SAM3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010783 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.2e-26
Identity = 57/70 (81.43%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSR +E+GNFQTSGVSILVHS+LYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGKSRMIEYGNFQTSGVSILVHSVLYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYLGS 70

[Close]
BLAST of CSPI02G25550 vs. TrEMBL
Match: B9N0Y0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09670g PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.4e-26
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+QMPG  RF+EFGNF+TSGVSILVHSILYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQMPGHHRFIEFGNFKTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

[Close]
BLAST of CSPI02G25550 vs. TrEMBL
Match: A0A067LG52_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10108 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25
Identity = 58/69 (84.06%), Postives = 67/69 (97.10%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PG+ RF+EFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGRHRFIEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMG 70
          AV VH+Y+G
Sbjct: 61 AVGVHMYLG 69

[Close]
BLAST of CSPI02G25550 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 110.5 bits (275), Expect = 4.2e-25
Identity = 46/69 (66.67%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPV V V+LFV+LTPGLL Q+PG+ ++VEFGNFQTS VS++VHS+LYF+L+C+FLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AVRVHVYMG 70
          A+++H+Y+G
Sbjct: 61 ALKIHIYIG 69

[Close]
BLAST of CSPI02G25550 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 102.8 bits (255), Expect = 8.7e-23
Identity = 45/66 (68.18%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M DWGPVFVAV LFVLLTPGLL+Q+PG+ R VEFG FQTSG+S++VH+++YF L+CI LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AVRVHV 67
          A+++H+
Sbjct: 61 ALQIHI 66

[Close]
BLAST of CSPI02G25550 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-22
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV VAV+LFVLLTPGLL Q+P + R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AVRVHVYMGS 71
          A+R+H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]
BLAST of CSPI02G25550 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 96.7 bits (239), Expect = 6.3e-21
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV +AV+LFV+L+PGLL Q+P   R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AVRVHVYMG 70
          A+ VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]
BLAST of CSPI02G25550 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-19
Identity = 38/66 (57.58%), Postives = 56/66 (84.85%), Query Frame = 1 

Query: 2  ADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLLA 61
          ADWGPV VAV LF+LL+PGLL Q+P ++R +EFGN  TSG+SILVH+I+YF ++ I ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 VRVHVY 68
          +++H++
Sbjct: 63 IQIHIH 68

[Close]
BLAST of CSPI02G25550 vs. NCBI nr
Match: gi|659081418|ref|XP_008441325.1| (PREDICTED: uncharacterized protein LOC103485474 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AVRVHVYMGS
Sbjct: 61 AVRVHVYMGS 70

[Close]
BLAST of CSPI02G25550 vs. NCBI nr
Match: gi|658012060|ref|XP_008341292.1| (PREDICTED: uncharacterized protein LOC103404182 [Malus domestica])

HSP 1 Score: 128.3 bits (321), Expect = 5.5e-27
Identity = 60/70 (85.71%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LF+LLTPGLL+QMPGKSRFVEFGNFQTSGVSILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVVLFILLTPGLLIQMPGKSRFVEFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]
BLAST of CSPI02G25550 vs. NCBI nr
Match: gi|645250211|ref|XP_008231104.1| (PREDICTED: uncharacterized protein LOC103330325 [Prunus mume])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+QMPGK RFVEFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQMPGKGRFVEFGNFQTSGISILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]
BLAST of CSPI02G25550 vs. NCBI nr
Match: gi|657974552|ref|XP_008379108.1| (PREDICTED: uncharacterized protein LOC103442131 [Malus domestica])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LFVLLTPGLL+QMPGKSRFV FGNFQTSGVSILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVLLFVLLTPGLLIQMPGKSRFVXFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]
BLAST of CSPI02G25550 vs. NCBI nr
Match: gi|590647455|ref|XP_007031906.1| (Uncharacterized protein TCM_017235 [Theobroma cacao])

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-26
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSRF+EFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

The following BLAST results are available for this feature:
BLAST of CSPI02G25550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G25550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061EEJ7_THECC1.9e-2684.29Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1[more]
A0A059APQ4_EUCGR7.2e-2682.86Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01640 PE=4 SV=1[more]
W9SAM3_9ROSA7.2e-2681.43Uncharacterized protein OS=Morus notabilis GN=L484_010783 PE=4 SV=1[more]
B9N0Y0_POPTR9.4e-2684.29Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09670g PE=4 SV=1[more]
A0A067LG52_JATCU1.2e-2584.06Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10108 PE=4 SV=1[more]
BLAST of CSPI02G25550 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08391.14.2e-2566.67 Protein of unknown function (DUF 3339)[more]
AT3G27030.18.7e-2368.18 unknown protein[more]
AT3G48660.11.1e-2268.57 Protein of unknown function (DUF 3339)[more]
AT5G63500.16.3e-2165.22 Protein of unknown function (DUF 3339)[more]
AT5G40980.15.9e-1957.58 Protein of unknown function (DUF 3339)[more]
BLAST of CSPI02G25550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081418|ref|XP_008441325.1|4.1e-30100.00PREDICTED: uncharacterized protein LOC103485474 [Cucumis melo][more]
gi|658012060|ref|XP_008341292.1|5.5e-2785.71PREDICTED: uncharacterized protein LOC103404182 [Malus domestica][more]
gi|645250211|ref|XP_008231104.1|1.6e-2684.29PREDICTED: uncharacterized protein LOC103330325 [Prunus mume][more]
gi|657974552|ref|XP_008379108.1|1.6e-2685.71PREDICTED: uncharacterized protein LOC103442131 [Malus domestica][more]
gi|590647455|ref|XP_007031906.1|2.7e-2684.29Uncharacterized protein TCM_017235 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021775DUF3339
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G25550.1CSPI02G25550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021775Protein of unknown function DUF3339PFAMPF11820DUF3339coord: 1..67
score: 1.5
NoneNo IPR availablePANTHERPTHR33128FAMILY NOT NAMEDcoord: 1..69
score: 1.0
NoneNo IPR availablePANTHERPTHR33128:SF14SUBFAMILY NOT NAMEDcoord: 1..69
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G25550Bhi04G001993Wax gourdcpiwgoB161
CSPI02G25550CmoCh15G000740Cucurbita moschata (Rifu)cmocpiB271
CSPI02G25550Cp4.1LG13g11200Cucurbita pepo (Zucchini)cpecpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G25550Cucumber (Gy14) v1cgycpiB093
CSPI02G25550Cucurbita maxima (Rimu)cmacpiB281
CSPI02G25550Cucurbita maxima (Rimu)cmacpiB702
CSPI02G25550Cucurbita moschata (Rifu)cmocpiB695
CSPI02G25550Cucumber (Chinese Long) v2cpicuB065
CSPI02G25550Melon (DHL92) v3.5.1cpimeB116
CSPI02G25550Watermelon (Charleston Gray)cpiwcgB106
CSPI02G25550Watermelon (97103) v1cpiwmB163
CSPI02G25550Cucurbita pepo (Zucchini)cpecpiB385
CSPI02G25550Bottle gourd (USVL1VR-Ls)cpilsiB113
CSPI02G25550Melon (DHL92) v3.6.1cpimedB112
CSPI02G25550Cucumber (Gy14) v2cgybcpiB057
CSPI02G25550Silver-seed gourdcarcpiB0018
CSPI02G25550Silver-seed gourdcarcpiB1048
CSPI02G25550Cucumber (Chinese Long) v3cpicucB081
CSPI02G25550Watermelon (97103) v2cpiwmbB116