CSPI02G25430 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G25430
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 21645230 .. 21645506 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGGTCATCGACTCTGCCCGCCATACGCCACCGCAGGAGACCGATGAATTTCGTGCCCTCACAACTCCCGCCAAATCCTGCAACCGGTTATCGCCGGTGACCACCTCATATTTCCGGTAACCTTCTTACTCCTTTTATTTTCAATTTTTTTTTTAAAGAAAAGATCTCTCTTCTTCAGCCCCCCGAAACAAAACCAAAATCTCTGGCTATGGAACTTCCGACTTCCTTCTTCTTCAACTTCTTTCCGATTCCGTCATCTTTGCTGTTCGAT

mRNA sequence

ATGAAATTGGTCATCGACTCTGCCCGCCATACGCCACCGCAGGAGACCGATGAATTTCGTGCCCTCACAACTCCCGCCAAATCCTGCAACCGGTTATCGCCGCCCCCCGAAACAAAACCAAAATCTCTGGCTATGGAACTTCCGACTTCCTTCTTCTTCAACTTCTTTCCGATTCCGTCATCTTTGCTGTTCGAT

Coding sequence (CDS)

ATGAAATTGGTCATCGACTCTGCCCGCCATACGCCACCGCAGGAGACCGATGAATTTCGTGCCCTCACAACTCCCGCCAAATCCTGCAACCGGTTATCGCCGCCCCCCGAAACAAAACCAAAATCTCTGGCTATGGAACTTCCGACTTCCTTCTTCTTCAACTTCTTTCCGATTCCGTCATCTTTGCTGTTCGAT

Homology

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BLAST of CSPI02G25430 vs. TrEMBL
Match: A0A0A0LQ47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G405000 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.4e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS 60
          MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS
Sbjct: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS 60

Query: 61 SLLFD 66
          SLLFD
Sbjct: 61 SLLFD 65

[Close]

BLAST of CSPI02G25430 vs. NCBI nr
Match: gi|700208030|gb|KGN63149.1| (hypothetical protein Csa_2G405000 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 9.2e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS 60
          MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS
Sbjct: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSPPPETKPKSLAMELPTSFFFNFFPIPS 60

Query: 61 SLLFD 66
          SLLFD
Sbjct: 61 SLLFD 65

[Close]

BLAST of CSPI02G25430 vs. NCBI nr
Match: gi|659081380|ref|XP_008441304.1| (PREDICTED: probable histone chaperone ASF1A [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-07
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1


Query: 1  MKLVIDSARHTPPQETDEFRALTTPAKSCNRLSP 35
          MK  IDSARHTPPQ+TD+FRALTTPAKS NRLSP
Sbjct: 1  MKFAIDSARHTPPQQTDDFRALTTPAKSRNRLSP 34

The following BLAST results are available for this feature:

BLAST of CSPI02G25430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G25430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ47_CUCSA	6.4e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G405000 PE=4 SV=1	[more]

BLAST of CSPI02G25430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G25430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208030\|gb\|KGN63149.1\|	9.2e-29	100.00	hypothetical protein Csa_2G405000 [Cucumis sativus]	[more]
gi\|659081380\|ref\|XP_008441304.1\|	2.6e-07	85.29	PREDICTED: probable histone chaperone ASF1A [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G25430.1	CSPI02G25430.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G25430	Csa2G405000	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G25430	CsaV3_2G033950	Cucumber (Chinese Long) v3	cpicucB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G25430	Cucumber (Gy14) v1	cgycpiB093
CSPI02G25430	Cucurbita maxima (Rimu)	cmacpiB281
CSPI02G25430	Cucurbita maxima (Rimu)	cmacpiB702
CSPI02G25430	Cucurbita moschata (Rifu)	cmocpiB271
CSPI02G25430	Cucurbita moschata (Rifu)	cmocpiB695
CSPI02G25430	Melon (DHL92) v3.5.1	cpimeB116
CSPI02G25430	Watermelon (Charleston Gray)	cpiwcgB112
CSPI02G25430	Watermelon (97103) v1	cpiwmB167
CSPI02G25430	Cucurbita pepo (Zucchini)	cpecpiB168
CSPI02G25430	Cucurbita pepo (Zucchini)	cpecpiB385
CSPI02G25430	Bottle gourd (USVL1VR-Ls)	cpilsiB113
CSPI02G25430	Melon (DHL92) v3.6.1	cpimedB112
CSPI02G25430	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G25430	Silver-seed gourd	carcpiB0018
CSPI02G25430	Silver-seed gourd	carcpiB1048
CSPI02G25430	Watermelon (97103) v2	cpiwmbB106
CSPI02G25430	Wax gourd	cpiwgoB161