CSPI02G25170 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G25170
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 21485041 .. 21485476 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCCTTTCTCCATGGGAATTACAGGGAAAAGGTAAAAGGGTTTGGGAAAACAGAAAGAAAAAGGGCAATAGAAGGGAAAGGGGGGGAAGTGGGAGAGTGTATGAAGAAGAAGATGAAAACCCAGGAAGGAGAAGCGGGGATTTTGGAATCAGGGGGTGGGTGGCTTGGGCAGATAAGATGGGCGGTGTGGTGTTAAGGAGAAGTCGCTACAGTTTGGGTTGCACCGCACGGGTGTGGGAACTGGAAAGTGGTAAGTGGAAGGGGAACTGATTTTGGGTCTGTGATTATGAATCGGGTCGGGATTTGGCGCCGCTATATGGGTGCGACAGGTCTTTGTCTCGCGCCTACTTTCCTCAACCTATTGTGCTTGACAATTCTGAATCTTCTCAAGGTAAATAGTAACAATACGCATCCAGATTTCAACCTCTAA

mRNA sequence

ATGGGAGGCCTTTCTCCATGGGAATTACAGGGAAAAGGTAAAAGGGTTTGGGAAAACAGAAAGAAAAAGGGCAATAGAAGGGAAAGGGGGGGAAGTGGGAGAGTGTATGAAGAAGAAGATGAAAACCCAGGAAGGAGAAGCGGGGATTTTGGAATCAGGGGGTGGGTGGCTTGGGCAGATAAGATGGGCGGTGTGGTGTTAAGGAGAAGTCGCTACAGTTTGGGTTGCACCGCACGGGTGTGGGAACTGGAAAGTGGTCTTTGTCTCGCGCCTACTTTCCTCAACCTATTGTGCTTGACAATTCTGAATCTTCTCAAGGTAAATAGTAACAATACGCATCCAGATTTCAACCTCTAA

Coding sequence (CDS)

ATGGGAGGCCTTTCTCCATGGGAATTACAGGGAAAAGGTAAAAGGGTTTGGGAAAACAGAAAGAAAAAGGGCAATAGAAGGGAAAGGGGGGGAAGTGGGAGAGTGTATGAAGAAGAAGATGAAAACCCAGGAAGGAGAAGCGGGGATTTTGGAATCAGGGGGTGGGTGGCTTGGGCAGATAAGATGGGCGGTGTGGTGTTAAGGAGAAGTCGCTACAGTTTGGGTTGCACCGCACGGGTGTGGGAACTGGAAAGTGGTCTTTGTCTCGCGCCTACTTTCCTCAACCTATTGTGCTTGACAATTCTGAATCTTCTCAAGGTAAATAGTAACAATACGCATCCAGATTTCAACCTCTAA
Homology
[Close]
BLAST of CSPI02G25170 vs. TrEMBL
Match: A0A0A0LQQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404740 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-42
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1 

Query: 1  MGGLSPWELQGKGKRVWENRKKKGNRRERGGSGRVYEEEDENPGRRSGDFGIRGWVAWAD 60
          MGGLSPWELQGKGKRVWENRKKK NRRERGGSGRVYEEEDENPGRRSGDFGIRGWVAWAD
Sbjct: 1  MGGLSPWELQGKGKRVWENRKKKDNRRERGGSGRVYEEEDENPGRRSGDFGIRGWVAWAD 60

Query: 61 KMGGVVLRRSRYSLGCTARVWELESG 87
          KMGGVVLRRSRYSLGCTARVWELESG
Sbjct: 61 KMGGVVLRRSRYSLGCTARVWELESG 86

[Close]
BLAST of CSPI02G25170 vs. NCBI nr
Match: gi|700208003|gb|KGN63122.1| (hypothetical protein Csa_2G404740 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-42
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1 

Query: 1  MGGLSPWELQGKGKRVWENRKKKGNRRERGGSGRVYEEEDENPGRRSGDFGIRGWVAWAD 60
          MGGLSPWELQGKGKRVWENRKKK NRRERGGSGRVYEEEDENPGRRSGDFGIRGWVAWAD
Sbjct: 1  MGGLSPWELQGKGKRVWENRKKKDNRRERGGSGRVYEEEDENPGRRSGDFGIRGWVAWAD 60

Query: 61 KMGGVVLRRSRYSLGCTARVWELESG 87
          KMGGVVLRRSRYSLGCTARVWELESG
Sbjct: 61 KMGGVVLRRSRYSLGCTARVWELESG 86

The following BLAST results are available for this feature:
BLAST of CSPI02G25170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G25170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQQ7_CUCSA3.2e-4298.84Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404740 PE=4 SV=1[more]
BLAST of CSPI02G25170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G25170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208003|gb|KGN63122.1|4.6e-4298.84hypothetical protein Csa_2G404740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G25170.1CSPI02G25170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G25170CsaV3_2G033680Cucumber (Chinese Long) v3cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G25170Cucumber (Gy14) v1cgycpiB093
CSPI02G25170Cucurbita maxima (Rimu)cmacpiB281
CSPI02G25170Cucurbita maxima (Rimu)cmacpiB702
CSPI02G25170Cucurbita moschata (Rifu)cmocpiB271
CSPI02G25170Cucurbita moschata (Rifu)cmocpiB695
CSPI02G25170Cucumber (Chinese Long) v2cpicuB065
CSPI02G25170Melon (DHL92) v3.5.1cpimeB116
CSPI02G25170Watermelon (Charleston Gray)cpiwcgB112
CSPI02G25170Watermelon (97103) v1cpiwmB167
CSPI02G25170Cucurbita pepo (Zucchini)cpecpiB168
CSPI02G25170Cucurbita pepo (Zucchini)cpecpiB385
CSPI02G25170Bottle gourd (USVL1VR-Ls)cpilsiB113
CSPI02G25170Melon (DHL92) v3.6.1cpimedB112
CSPI02G25170Cucumber (Gy14) v2cgybcpiB057
CSPI02G25170Silver-seed gourdcarcpiB0018
CSPI02G25170Silver-seed gourdcarcpiB1119
CSPI02G25170Watermelon (97103) v2cpiwmbB106
CSPI02G25170Wax gourdcpiwgoB161