CSPI02G24800 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G24800
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BnaA05g17850D protein
Location	Chr2 : 21273699 .. 21274445 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGGCAAATTTGTTGGACCATAACGTCATCTAAAGTTAGTTTTCAGGTCGAGAGGGAAGATCTATTGGGTAAGTTGGAATCTGCGGAAGCCAAACTTAGTGAAGTTTCAAAGAAGAAATGTGCAGTTGTTTTGGAAAAGTCCAAGGTAATCAATGTCATCAAAGACTGTATGCGAGATTATAATAAGAGTGCTTCCATTCGCAACTTCCTACCATCTCCATATACGTAAAGGAAAAGAAAGATTAGCTATGAAGATAGGAACATTTTTAACTGTAGATTGCTAATTTGGACGAGCATCTATTTTTGTTTCAGATTGAACAGTCGATTGAGGAGCTTAAGAATGAATTAAACGATTTTAAGGTTAGTGTACGTGGTGCTGATATTTACTCTTTTTAATAAATTAAGTTAGTTTAGCTAAGTTGTCAATCAGCTGCTTTGTGATCAGTACATATCGTAACTCCTTTTTCTATTGACTTACATCTATCTCCCAACTGTAACAACCATTTTTACATCCAATTATGGGGGCAATTTAGAATCAACCTGTTTTAATATAACCTCTTATTTAATAATTTTTCCTGGTTAAAAACTTCAGCCAGAACTCAGAGCAATGGATGATGTTACATTGGAGGAAGAGTACAAGGCTCTCTTATCAGATCAAGCTGGAGAAACTGAGTATTCACAGTCACTTCAAGACAAAATTGCAAAACTGAAGGTGATTTTCAACTCAGCAATTTTATCTTAA

mRNA sequence

ATGGAATGGCAAATTTGTTGGACCATAACGTCATCTAAAGTTAGTTTTCAGGTCGAGAGGGAAGATCTATTGGGTAAGTTGGAATCTGCGGAAGCCAAACTTAGTGAAGTTTCAAAGAAGAAATGTGCAGTTGTTTTGGAAAAGTCCAAGATTGCTAATTTGGACGAGCATCTATTTTTGTTTCAGATTGAACAGTCGATTGAGGAGCTTAAGAATGAATTAAACGATTTTAAGCCAGAACTCAGAGCAATGGATGATGTTACATTGGAGGAAGAGTACAAGGCTCTCTTATCAGATCAAGCTGGAGAAACTGAGTATTCACAGTCACTTCAAGACAAAATTGCAAAACTGAAGGTGATTTTCAACTCAGCAATTTTATCTTAA

Coding sequence (CDS)

ATGGAATGGCAAATTTGTTGGACCATAACGTCATCTAAAGTTAGTTTTCAGGTCGAGAGGGAAGATCTATTGGGTAAGTTGGAATCTGCGGAAGCCAAACTTAGTGAAGTTTCAAAGAAGAAATGTGCAGTTGTTTTGGAAAAGTCCAAGATTGCTAATTTGGACGAGCATCTATTTTTGTTTCAGATTGAACAGTCGATTGAGGAGCTTAAGAATGAATTAAACGATTTTAAGCCAGAACTCAGAGCAATGGATGATGTTACATTGGAGGAAGAGTACAAGGCTCTCTTATCAGATCAAGCTGGAGAAACTGAGTATTCACAGTCACTTCAAGACAAAATTGCAAAACTGAAGGTGATTTTCAACTCAGCAATTTTATCTTAA

Homology

[Close]

BLAST of CSPI02G24800 vs. TrEMBL
Match: A0A0A0LMF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401450 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.3e-45
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1


Query: 18  VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 77
           VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF
Sbjct: 283 VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 342

Query: 78  KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLK I
Sbjct: 343 KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKGI 385

[Close]

BLAST of CSPI02G24800 vs. TrEMBL
Match: B9S6X6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329260 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 20  REDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDFKP 79
           R+ L+ K++ A+AKL EV + K  +  E SK+            +QSIE+++    +FKP
Sbjct: 185 RKKLMAKVDCAKAKLDEVGRMKSELATENSKV------------KQSIEQVRCSAKEFKP 244

Query: 80  ELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           EL AMD  TLEEEYKALLSD+AGE EY QSLQD+I KLK I
Sbjct: 245 ELLAMDTTTLEEEYKALLSDKAGEFEYLQSLQDQIDKLKGI 273

[Close]

BLAST of CSPI02G24800 vs. TrEMBL
Match: M5VP97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009717mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.7e-14
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 20  REDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDFKP 79
           R++L+  L+SA+AKL E+ K K  + +E  K+            +Q++E+     NDFKP
Sbjct: 173 RKNLMATLDSAKAKLDEILKMKSELAIENRKM------------KQAVEQANCRENDFKP 232

Query: 80  ELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKV 120
           ELRAMD  TLEEEY ALLSD+AG TEY +SLQD+I KLKV
Sbjct: 233 ELRAMDVNTLEEEYDALLSDKAGVTEYLKSLQDQIEKLKV 260

[Close]

BLAST of CSPI02G24800 vs. TrEMBL
Match: A0A067K9A6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14828 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 20  REDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDFKP 79
           R++L+ KL+SA+AKL E  + K  +V E S             ++QSI++++++  +FKP
Sbjct: 177 RKNLMAKLDSAKAKLEEAVQMKSKLVKENS------------MVKQSIDQVRSKEKEFKP 236

Query: 80  ELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           EL  MD +TLEEEYKALLSD+ GE EY QSLQ +I KLK I
Sbjct: 237 ELLVMDIMTLEEEYKALLSDKDGEFEYLQSLQGQIGKLKGI 265

[Close]

BLAST of CSPI02G24800 vs. TrEMBL
Match: V7AJU0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G215700g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1


Query: 18  VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 77
           V R +L+ +L+SA+A L E+   K  V+ E SKI            + +IEE+K   N+F
Sbjct: 176 VARNNLINELDSAKATLDEILTLKAKVLTENSKI------------KLAIEEVKCRENEF 235

Query: 78  KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           KPEL+A D   LEEEYKALLSD+ GETEY QSL+ ++ +LK I
Sbjct: 236 KPELKAADLTALEEEYKALLSDKDGETEYLQSLEKQVERLKEI 266

[Close]

BLAST of CSPI02G24800 vs. TAIR10
Match: AT1G33500.1 (AT1G33500.1 unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 1


Query: 20  REDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDFKP 79
           R +L+   +SA AKL +    +  ++ E SKI            + SIE +K+++N+FKP
Sbjct: 149 RNNLMELSDSARAKLDQAKLMRSNLLQENSKI------------KLSIENVKHKINEFKP 208

Query: 80  ELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKV 120
           EL ++D   LEEEY ALLSD++GE EY  SLQ +  KLKV
Sbjct: 209 ELMSVDIKILEEEYTALLSDESGEAEYLSSLQSQAEKLKV 236

[Close]

BLAST of CSPI02G24800 vs. NCBI nr
Match: gi|700207966|gb|KGN63085.1| (hypothetical protein Csa_2G401450 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1


Query: 18  VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 77
           VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF
Sbjct: 283 VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 342

Query: 78  KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLK I
Sbjct: 343 KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKGI 385

[Close]

BLAST of CSPI02G24800 vs. NCBI nr
Match: gi|778672907|ref|XP_011649890.1| (PREDICTED: myosin heavy chain, striated muscle [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 5.8e-35
Identity = 90/103 (87.38%), Postives = 90/103 (87.38%), Query Frame = 1


Query: 18  VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 77
           VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKI            EQSIEELKNELNDF
Sbjct: 180 VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKI------------EQSIEELKNELNDF 239

Query: 78  KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLK I
Sbjct: 240 KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKGI 270

[Close]

BLAST of CSPI02G24800 vs. NCBI nr
Match: gi|659081176|ref|XP_008441193.1| (PREDICTED: myosin heavy chain, clone 203 isoform X1 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-33
Identity = 87/103 (84.47%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 18  VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 77
           VE EDLLGKLESAEAKLSEVSKKKCAVVLEKSKI            +QSIEELKNELNDF
Sbjct: 180 VEGEDLLGKLESAEAKLSEVSKKKCAVVLEKSKI------------KQSIEELKNELNDF 239

Query: 78  KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           KPELRAMDDVTLEEEYKALLSDQAGETEYS+SLQDKIAKLK I
Sbjct: 240 KPELRAMDDVTLEEEYKALLSDQAGETEYSRSLQDKIAKLKGI 270

[Close]

BLAST of CSPI02G24800 vs. NCBI nr
Match: gi|659081180|ref|XP_008441195.1| (PREDICTED: protein hook isoform X3 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-33
Identity = 87/103 (84.47%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 18  VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 77
           VE EDLLGKLESAEAKLSEVSKKKCAVVLEKSKI            +QSIEELKNELNDF
Sbjct: 125 VEGEDLLGKLESAEAKLSEVSKKKCAVVLEKSKI------------KQSIEELKNELNDF 184

Query: 78  KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           KPELRAMDDVTLEEEYKALLSDQAGETEYS+SLQDKIAKLK I
Sbjct: 185 KPELRAMDDVTLEEEYKALLSDQAGETEYSRSLQDKIAKLKGI 215

[Close]

BLAST of CSPI02G24800 vs. NCBI nr
Match: gi|659081178|ref|XP_008441194.1| (PREDICTED: centromere-associated protein E isoform X2 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-23
Identity = 72/103 (69.90%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 18  VEREDLLGKLESAEAKLSEVSKKKCAVVLEKSKIANLDEHLFLFQIEQSIEELKNELNDF 77
           VE EDLLGKLESAEAKLSEVSKKKCAVVLEKS                            
Sbjct: 180 VEGEDLLGKLESAEAKLSEVSKKKCAVVLEKS---------------------------- 239

Query: 78  KPELRAMDDVTLEEEYKALLSDQAGETEYSQSLQDKIAKLKVI 121
           KPELRAMDDVTLEEEYKALLSDQAGETEYS+SLQDKIAKLK I
Sbjct: 240 KPELRAMDDVTLEEEYKALLSDQAGETEYSRSLQDKIAKLKGI 254

The following BLAST results are available for this feature:

BLAST of CSPI02G24800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G24800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMF4_CUCSA	7.3e-45	99.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401450 PE=4 SV=1	[more]
B9S6X6_RICCO	2.3e-14	51.49	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329260 PE=4 SV=1	[more]
M5VP97_PRUPE	6.7e-14	51.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009717mg PE=4 SV=1	[more]
A0A067K9A6_JATCU	1.3e-12	48.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14828 PE=4 SV=1	[more]
V7AJU0_PHAVU	6.3e-12	47.57	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G215700g PE=4 SV=1	[more]

BLAST of CSPI02G24800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33500.1	3.3e-12	43.00	unknown protein	[more]

BLAST of CSPI02G24800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207966\|gb\|KGN63085.1\|	1.1e-44	99.03	hypothetical protein Csa_2G401450 [Cucumis sativus]	[more]
gi\|778672907\|ref\|XP_011649890.1\|	5.8e-35	87.38	PREDICTED: myosin heavy chain, striated muscle [Cucumis sativus]	[more]
gi\|659081176\|ref\|XP_008441193.1\|	3.2e-33	84.47	PREDICTED: myosin heavy chain, clone 203 isoform X1 [Cucumis melo]	[more]
gi\|659081180\|ref\|XP_008441195.1\|	3.2e-33	84.47	PREDICTED: protein hook isoform X3 [Cucumis melo]	[more]
gi\|659081178\|ref\|XP_008441194.1\|	3.9e-23	69.90	PREDICTED: centromere-associated protein E isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G24800.1	CSPI02G24800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 20..40 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G24800	Csa2G401450	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G24800	MELO3C008102	Melon (DHL92) v3.5.1	cpimeB116
CSPI02G24800	ClCG11G008290	Watermelon (Charleston Gray)	cpiwcgB112
CSPI02G24800	Lsi03G004690	Bottle gourd (USVL1VR-Ls)	cpilsiB113
CSPI02G24800	MELO3C008102.2	Melon (DHL92) v3.6.1	cpimedB112
CSPI02G24800	CsaV3_2G033310	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G24800	Cla97C11G215280	Watermelon (97103) v2	cpiwmbB106
CSPI02G24800	CmaCh15G000240	Cucurbita maxima (Rimu)	cmacpiB281
CSPI02G24800	CmoCh15G000240	Cucurbita moschata (Rifu)	cmocpiB271
CSPI02G24800	Cp4.1LG13g11540	Cucurbita pepo (Zucchini)	cpecpiB168
CSPI02G24800	CsGy2G024530	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G24800	Carg22871	Silver-seed gourd	carcpiB1119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G24800	Silver-seed gourd	carcpiB0018
CSPI02G24800	Wax gourd	cpiwgoB161
CSPI02G24800	Cucumber (Gy14) v1	cgycpiB093
CSPI02G24800	Cucurbita maxima (Rimu)	cmacpiB702
CSPI02G24800	Cucurbita moschata (Rifu)	cmocpiB695
CSPI02G24800	Watermelon (97103) v1	cpiwmB167
CSPI02G24800	Cucurbita pepo (Zucchini)	cpecpiB385