CSPI02G24670 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G24670
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 21189708 .. 21190081 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGGCAATCAAAAGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGGAAGAAGAAACAGAATTTGGAGCAAAGAGTTCCGAACTGAGCAAAAAACTCAATCGGTAACAAGTAGAAATGGGAGTTGACAGAGAAAAACGAGGAAAGCTTGGATGATTTTACTACAGCAAAGGCAGACTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTCGAGTCTTGGGCGGCGCGGCGGCCGAAAGGGACGAACAAATTGGCGGGGATTGTTTGCAAATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTCTCTTAATATGGAAGTTCTTC

mRNA sequence

ATGCCCGGCAATCAAAAGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGGAAGAAGAAACAGAATTTGGAGCAAAGAGTTCCGAACTGAGCAAAAAACTCAATCGGCAGACTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTCGAGTCTTGGGCGGCGCGGCGGCCGAAAGGGACGAACAAATTGGCGGGGATTGTTTGCAAATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTCTCTTAATATGGAAGTTCTTC

Coding sequence (CDS)

ATGCCCGGCAATCAAAAGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGGAAGAAGAAACAGAATTTGGAGCAAAGAGTTCCGAACTGAGCAAAAAACTCAATCGGCAGACTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTCGAGTCTTGGGCGGCGCGGCGGCCGAAAGGGACGAACAAATTGGCGGGGATTGTTTGCAAATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTCTCTTAATATGGAAGTTCTTC
Homology
[Close]
BLAST of CSPI02G24670 vs. TrEMBL
Match: A0A0A0LQL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401320 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.3e-46
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60
           MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL
Sbjct: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60

Query: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIW 100
           GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIW
Sbjct: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIW 99

[Close]
BLAST of CSPI02G24670 vs. NCBI nr
Match: gi|700207953|gb|KGN63072.1| (hypothetical protein Csa_2G401320 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.6e-46
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60
           MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL
Sbjct: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60

Query: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIW 100
           GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIW
Sbjct: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILLIW 99

The following BLAST results are available for this feature:
BLAST of CSPI02G24670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G24670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQL4_CUCSA5.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401320 PE=4 SV=1[more]
BLAST of CSPI02G24670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G24670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207953|gb|KGN63072.1|7.6e-46100.00hypothetical protein Csa_2G401320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G24670.1CSPI02G24670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G24670Csa2G401320Cucumber (Chinese Long) v2cpicuB065
CSPI02G24670CsaV3_2G033190Cucumber (Chinese Long) v3cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G24670Melon (DHL92) v3.6.1cpimedB112
CSPI02G24670Cucumber (Gy14) v2cgybcpiB057
CSPI02G24670Silver-seed gourdcarcpiB0018
CSPI02G24670Silver-seed gourdcarcpiB1119
CSPI02G24670Watermelon (97103) v2cpiwmbB106
CSPI02G24670Wax gourdcpiwgoB161
CSPI02G24670Cucumber (Gy14) v1cgycpiB093
CSPI02G24670Cucurbita maxima (Rimu)cmacpiB281
CSPI02G24670Cucurbita maxima (Rimu)cmacpiB702
CSPI02G24670Cucurbita moschata (Rifu)cmocpiB271
CSPI02G24670Cucurbita moschata (Rifu)cmocpiB695
CSPI02G24670Melon (DHL92) v3.5.1cpimeB116
CSPI02G24670Watermelon (Charleston Gray)cpiwcgB112
CSPI02G24670Watermelon (97103) v1cpiwmB159
CSPI02G24670Watermelon (97103) v1cpiwmB167
CSPI02G24670Cucurbita pepo (Zucchini)cpecpiB168
CSPI02G24670Cucurbita pepo (Zucchini)cpecpiB385
CSPI02G24670Cucurbita pepo (Zucchini)cpecpiB777
CSPI02G24670Bottle gourd (USVL1VR-Ls)cpilsiB113