CSPI02G24450 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G24450
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Fanconi anemia group M
Location	Chr2 : 20982415 .. 20983203 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTACTAAAATTGTGATCTTATACAACAGGCGTTCTTTGCTAAGTCAATCACCATTTGGGAGGTTGACTTCACCCCTAGCGACCAGGGTAACTGAAAGTGAAACTTCTCCTGACAAGACATTGAATATTTTCCAGTCAACTGTAACAGACGACGTCAATCAATCTCATACACTGCATTCAAAACATGTGAAAATGAACTGCAGCCCAGAAGTTGTAATTGCTACAATTGGTGTCTGCCCAAGGACGACAGACGTGGAAAGCATGAATAGAAATTCGACATTTTGTACATCAGAACCTGTTCCTGTACTTAATTTGGATAAACAGTTTGAGTTGGTGGTGGCAGGGAGAGAATCCATAAGCGAAGTGGATTCAAATAGAAATGTATTCATTGATGATGATGAATTTTATGAAGGTCTTGACCTTGATGCAGTTGAGGCCCATGCAAAATTGCTCCTCCAGAAGAAAGTTGAGTTGCCACAGATTATGGTTACTCAGCAACAGAAGAATATTCCTATCGACACTTCTCCATCTTTTGATCTTGGGATATGACCGTTTTCTATGTGCATATGACTTGTTCAAATACTTAATTTCCGGAAAATATAATCTGGAAAGTTCGGTATTTGTTTTTGGACTCATACTCCTGATTTTCTTCGTGATTGGGGGATATCAAAGTGGCAAGTATGCTTAAATTATGATTTAGTGGTTGGGTGGGGAGGAGTATGTAAAAAACAAATACTACACTGCGTTGTACAAAAGTTATTAAAATAAGAATTTCAGTTTTGTTA

mRNA sequence

ATGAACTGCAGCCCAGAAGTTGTAATTGCTACAATTGGTGTCTGCCCAAGGACGACAGACGTGGAAAGCATGAATAGAAATTCGACATTTTGTACATCAGAACCTGTTCCTGTACTTAATTTGGATAAACAGTTTGAGTTGGTGGTGGCAGGGAGAGAATCCATAAGCGAAGTGGATTCAAATAGAAATGTATTCATTGATGATGATGAATTTTATGAAGGTCTTGACCTTGATGCAGTTGAGGCCCATGCAAAATTGCTCCTCCAGAAGAAAGTTGAGTTGCCACAGATTATGGTTACTCAGCAACAGAAGAATATTCCTATCGACACTTCTCCATCTTTTGATCTTGGGATATGA

Coding sequence (CDS)

ATGAACTGCAGCCCAGAAGTTGTAATTGCTACAATTGGTGTCTGCCCAAGGACGACAGACGTGGAAAGCATGAATAGAAATTCGACATTTTGTACATCAGAACCTGTTCCTGTACTTAATTTGGATAAACAGTTTGAGTTGGTGGTGGCAGGGAGAGAATCCATAAGCGAAGTGGATTCAAATAGAAATGTATTCATTGATGATGATGAATTTTATGAAGGTCTTGACCTTGATGCAGTTGAGGCCCATGCAAAATTGCTCCTCCAGAAGAAAGTTGAGTTGCCACAGATTATGGTTACTCAGCAACAGAAGAATATTCCTATCGACACTTCTCCATCTTTTGATCTTGGGATATGA

Homology

[Close]

BLAST of CSPI02G24450 vs. TrEMBL
Match: A0A0A0LQJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G393190 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.9e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 60
           MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS
Sbjct: 735 MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 794

Query: 61  NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 119
           NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI
Sbjct: 795 NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 852

[Close]

BLAST of CSPI02G24450 vs. TrEMBL
Match: M5XL34_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000428mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-11
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 1


Query: 1    MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEV 60
            MNC+ E    T GV P   ++ES  R  +   S  VP +NL+++F  +   AGR+ +   
Sbjct: 1071 MNCNAEGTPCTTGVSPGY-EIESRKRKLSSHHSRSVPAVNLEREFSRQSEAAGRD-LQHN 1130

Query: 61   DSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELP----QIMVTQQQKNIPIDTSPSF 119
            D+N +V  DD  F+EGLDLDAVEA A LLL++K ELP    Q++     +N  +  SP+F
Sbjct: 1131 DANGDVLYDD-LFFEGLDLDAVEAQATLLLKQKSELPRQRQQMVPNIHPQNPSLQHSPTF 1190

[Close]

BLAST of CSPI02G24450 vs. TrEMBL
Match: F6GY81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0075g00130 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-11
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1


Query: 4   SPEVV----IATIGVCPRTTD--VESMNRNSTFCTSEPVPVLNLDKQFELVVAGRES--- 63
           +PE++    I    V PR  +  +ES  R         VP +NL++QF+L  A +ES   
Sbjct: 571 NPEIISSEAIPLTSVSPRENERKLESRKRKLGIYQGGSVPAINLERQFQLEAASKESSLQ 630

Query: 64  --ISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSP 119
               ++++N +VF DD +FYEGLDLDAVEA A +LL+ K EL      Q  +++ +  SP
Sbjct: 631 HQAEKIETNGDVFYDD-QFYEGLDLDAVEAQATMLLRHKSEL--FTQKQDPQSLDLFGSP 690

[Close]

BLAST of CSPI02G24450 vs. TrEMBL
Match: A5BVD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033355 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-11
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1


Query: 4   SPEVV----IATIGVCPRTTD--VESMNRNSTFCTSEPVPVLNLDKQFELVVAGRES--- 63
           +PE++    I    V PR  +  +ES  R         VP +NL++QF+L  A +ES   
Sbjct: 100 NPEIISSEAIPLTSVSPRENERKLESRKRKLGIYQGGSVPAINLERQFQLEAASKESSLQ 159

Query: 64  --ISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSP 119
               ++++N +VF DD +FYEGLDLDAVEA A +LL+ K EL      Q  +++ +  SP
Sbjct: 160 HQAEKIETNGDVFYDD-QFYEGLDLDAVEAQATMLLRHKSEL--FTQKQDPQSLDLFGSP 219

[Close]

BLAST of CSPI02G24450 vs. TrEMBL
Match: M5X547_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021892mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-09
Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 1


Query: 1   MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEV 60
           MNC+ E    T G+ P   ++ES  R  +   S  VP +NL+++F  +   AGR+ +   
Sbjct: 84  MNCNAEGTPCTTGISPGY-EIESRKRKLSSHHSRSVPAVNLEREFSRQSEAAGRD-LQHN 143

Query: 61  DSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 119
           D+N +V  DD  F+EGLD  AVEA A LLL++K ELP      +QK+  +  SP+FDLGI
Sbjct: 144 DANGDVLYDD-LFFEGLDRAAVEAQATLLLKQKSELP------RQKH--LQHSPTFDLGI 192

[Close]

BLAST of CSPI02G24450 vs. TAIR10
Match: AT1G35530.2 (AT1G35530.2 DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 48.1 bits (113), Expect = 4.3e-06
Identity = 38/111 (34.23%), Postives = 53/111 (47.75%), Query Frame = 1


Query: 22   ESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEVDSNRNVFI----DDDEFYEGL 81
            +S  R  + C S   PV+NL+ +F        +ES   V SN         DDD F+  L
Sbjct: 1279 DSRKRKFSLCNSANAPVINLESKFAAHAQATEKESHEGVRSNAGALEYNDDDDDAFFATL 1338

Query: 82   DLDAVEAHAKLLLQK-------KVELPQIMVTQQQKNIPID-TSPSFDLGI 119
            D DA+EA A LLL K       K +   I     Q++  ++  +PSFDLG+
Sbjct: 1339 DFDAMEAQATLLLSKQRSEAKEKEDATVIPNPGMQRSDGMEKDAPSFDLGL 1389

[Close]

BLAST of CSPI02G24450 vs. NCBI nr
Match: gi|700207933|gb|KGN63052.1| (hypothetical protein Csa_2G393190 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 60
           MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS
Sbjct: 735 MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 794

Query: 61  NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 119
           NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI
Sbjct: 795 NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 852

[Close]

BLAST of CSPI02G24450 vs. NCBI nr
Match: gi|778672811|ref|XP_011649876.1| (PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1    MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 60
            MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS
Sbjct: 1197 MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 1256

Query: 61   NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 119
            NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI
Sbjct: 1257 NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 1314

[Close]

BLAST of CSPI02G24450 vs. NCBI nr
Match: gi|778672808|ref|XP_011649875.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1    MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 60
            MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS
Sbjct: 1211 MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 1270

Query: 61   NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 119
            NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI
Sbjct: 1271 NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 1328

[Close]

BLAST of CSPI02G24450 vs. NCBI nr
Match: gi|659081089|ref|XP_008441146.1| (PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-53
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 1


Query: 1    MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 60
            MNCSPEVVIAT GVCPR TDVES NRNSTFCTSE VPVLNLDKQFELVVAGRESISEVDS
Sbjct: 1198 MNCSPEVVIATTGVCPRATDVESRNRNSTFCTSESVPVLNLDKQFELVVAGRESISEVDS 1257

Query: 61   NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 119
            NRNV+IDDDEFYEGLDLDAVEAHAKLLL+KKVELP  MVTQQQKNIPID SPSFDLGI
Sbjct: 1258 NRNVYIDDDEFYEGLDLDAVEAHAKLLLEKKVELPLTMVTQQQKNIPIDISPSFDLGI 1315

[Close]

BLAST of CSPI02G24450 vs. NCBI nr
Match: gi|659081087|ref|XP_008441145.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-53
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 1


Query: 1    MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDS 60
            MNCSPEVVIAT GVCPR TDVES NRNSTFCTSE VPVLNLDKQFELVVAGRESISEVDS
Sbjct: 1212 MNCSPEVVIATTGVCPRATDVESRNRNSTFCTSESVPVLNLDKQFELVVAGRESISEVDS 1271

Query: 61   NRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDTSPSFDLGI 119
            NRNV+IDDDEFYEGLDLDAVEAHAKLLL+KKVELP  MVTQQQKNIPID SPSFDLGI
Sbjct: 1272 NRNVYIDDDEFYEGLDLDAVEAHAKLLLEKKVELPLTMVTQQQKNIPIDISPSFDLGI 1329

The following BLAST results are available for this feature:

BLAST of CSPI02G24450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G24450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQJ7_CUCSA	2.9e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G393190 PE=4 SV=1	[more]
M5XL34_PRUPE	1.0e-11	42.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000428mg PE=4 SV=1	[more]
F6GY81_VITVI	3.8e-11	39.68	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0075g00130 PE=4 SV=...	[more]
A5BVD6_VITVI	3.8e-11	39.68	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033355 PE=4 SV=1	[more]
M5X547_PRUPE	2.7e-09	41.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021892mg PE=4 SV=1	[more]

BLAST of CSPI02G24450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G35530.2	4.3e-06	34.23	DEAD/DEAH box RNA helicase family protein	[more]

BLAST of CSPI02G24450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207933\|gb\|KGN63052.1\|	4.1e-59	100.00	hypothetical protein Csa_2G393190 [Cucumis sativus]	[more]
gi\|778672811\|ref\|XP_011649876.1\|	4.1e-59	100.00	PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis sativus]	[more]
gi\|778672808\|ref\|XP_011649875.1\|	4.1e-59	100.00	PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus]	[more]
gi\|659081089\|ref\|XP_008441146.1\|	1.5e-53	92.37	PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis melo]	[more]
gi\|659081087\|ref\|XP_008441145.1\|	1.5e-53	92.37	PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G24450.1	CSPI02G24450.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G24450	Cla011966	Watermelon (97103) v1	cpiwmB159
CSPI02G24450	Csa2G393190	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G24450	MELO3C008071	Melon (DHL92) v3.5.1	cpimeB116
CSPI02G24450	ClCG11G008660	Watermelon (Charleston Gray)	cpiwcgB103
CSPI02G24450	Lsi11G010020	Bottle gourd (USVL1VR-Ls)	cpilsiB098
CSPI02G24450	MELO3C008073.2	Melon (DHL92) v3.6.1	cpimedB112
CSPI02G24450	Cla97C11G214980	Watermelon (97103) v2	cpiwmbB113
CSPI02G24450	CmaCh15G000060	Cucurbita maxima (Rimu)	cmacpiB281
CSPI02G24450	CmoCh15G000050	Cucurbita moschata (Rifu)	cmocpiB271
CSPI02G24450	Cp4.1LG13g11740	Cucurbita pepo (Zucchini)	cpecpiB168
CSPI02G24450	CsGy2G024230	Cucumber (Gy14) v2	cgybcpiB057

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G24450	Silver-seed gourd	carcpiB0018
CSPI02G24450	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G24450	Wax gourd	cpiwgoB157
CSPI02G24450	Wax gourd	cpiwgoB161
CSPI02G24450	Cucumber (Gy14) v1	cgycpiB239
CSPI02G24450	Cucurbita maxima (Rimu)	cmacpiB702
CSPI02G24450	Cucurbita moschata (Rifu)	cmocpiB695
CSPI02G24450	Watermelon (Charleston Gray)	cpiwcgB112
CSPI02G24450	Watermelon (97103) v1	cpiwmB167
CSPI02G24450	Cucurbita pepo (Zucchini)	cpecpiB385
CSPI02G24450	Cucurbita pepo (Zucchini)	cpecpiB777