CSPI02G23340 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G23340
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BnaA03g03290D protein
Location	Chr2 : 20195193 .. 20195659 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTCCACTTCTTGCGAATTAAGGGCTCTTCTGTAGAAGGAAAGGATTATGGTTTATGGATCTCAATTGAATTAATATGTAGCCTTTTCCATAGGTTTGAAATGTTTCCATTATTCTTATAAAATCAATTAAGAAAATGGATCAAGGAATTGCCTAAGGGATAACTTTGAGAATTTGCTATATCCTCCTGAGCACCAGAGAATCCTTTTTAGAGGAATCAATTTGGACTGCAAGATAGTCTATTTTGTATCCTAGCTTGGTATTTTATTTCAAAATATTGATATCATTTGGTAATTTTGGATCTTGTTAAGGAAGGAATCGGCTTGGGAAAGCTGTTTATGTTTATCCTACAATGATTCTCACTGTGATCTGTGCTTTCTCATCGGTTAAATATGATGTGAAGAAGGTTCCTAGAGGTGCCCCTGCTCGACCAATTGCAAAGCCACCTCAAAGCCAATATTAA

mRNA sequence

ATGTGTTTCCACTTCTTGCGAATTAAGGGCTCTTCTGTAGAAGGAAAGGATTATGGAAGGAATCGGCTTGGGAAAGCTGTTTATGTTTATCCTACAATGATTCTCACTGTGATCTGTGCTTTCTCATCGGTTAAATATGATGTGAAGAAGGTTCCTAGAGGTGCCCCTGCTCGACCAATTGCAAAGCCACCTCAAAGCCAATATTAA

Coding sequence (CDS)

ATGTGTTTCCACTTCTTGCGAATTAAGGGCTCTTCTGTAGAAGGAAAGGATTATGGAAGGAATCGGCTTGGGAAAGCTGTTTATGTTTATCCTACAATGATTCTCACTGTGATCTGTGCTTTCTCATCGGTTAAATATGATGTGAAGAAGGTTCCTAGAGGTGCCCCTGCTCGACCAATTGCAAAGCCACCTCAAAGCCAATATTAA

Homology

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BLAST of CSPI02G23340 vs. TrEMBL
Match: A0A0A0LMA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380620 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 3.8e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MCFHFLRIKGSSVEGKDYGRNRLGKAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPI 60
          MCFHFLRIKGSSVEGKDYGRNRLGKAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPI
Sbjct: 6  MCFHFLRIKGSSVEGKDYGRNRLGKAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPI 65

Query: 61 AKPPQSQY 69
          AKPPQSQY
Sbjct: 66 AKPPQSQY 73

[Close]

BLAST of CSPI02G23340 vs. TrEMBL
Match: A0A0A0LMA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381640 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-12
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 25  KAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           KAVYVYPTMIL VICAFSSVKYDVKKV RGAPARPIAKP QS
Sbjct: 167 KAVYVYPTMILAVICAFSSVKYDVKKVARGAPARPIAKPLQS 208

[Close]

BLAST of CSPI02G23340 vs. TrEMBL
Match: B9RP71_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0924570 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 1


Query: 25  KAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           KAVYVYPTM+L VICAFSSVKYD KKV R APARPIAKP QS
Sbjct: 164 KAVYVYPTMVLAVICAFSSVKYDAKKVVRSAPARPIAKPLQS 205

[Close]

BLAST of CSPI02G23340 vs. TrEMBL
Match: A0A0B0MEG5_GOSAR (Putative tail fiber OS=Gossypium arboreum GN=F383_15781 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1


Query: 25  KAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           KAVYVYPTM+L +ICA SS+KYDVKKV R APARPIAKP QS
Sbjct: 172 KAVYVYPTMVLALICALSSIKYDVKKVMRTAPARPIAKPLQS 213

[Close]

BLAST of CSPI02G23340 vs. TrEMBL
Match: A0A0D2R545_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G274300 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.1e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1


Query: 23  LGKAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           L KAVYVYPTM+L +ICA SS+KYDVKKV R APARP+AKP QS
Sbjct: 173 LTKAVYVYPTMVLALICALSSIKYDVKKVMRTAPARPMAKPLQS 216

[Close]

BLAST of CSPI02G23340 vs. TAIR10
Match: AT5G11280.1 (AT5G11280.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-11
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1


Query: 25  KAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           K VYVYPTM+L +ICAFS +KYD++K  R APARPIAKP  S
Sbjct: 161 KTVYVYPTMVLAMICAFSMIKYDLRKATRAAPARPIAKPLMS 202

[Close]

BLAST of CSPI02G23340 vs. NCBI nr
Match: gi|700207814|gb|KGN62933.1| (hypothetical protein Csa_2G380620 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  MCFHFLRIKGSSVEGKDYGRNRLGKAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPI 60
          MCFHFLRIKGSSVEGKDYGRNRLGKAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPI
Sbjct: 6  MCFHFLRIKGSSVEGKDYGRNRLGKAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPI 65

Query: 61 AKPPQSQY 69
          AKPPQSQY
Sbjct: 66 AKPPQSQY 73

[Close]

BLAST of CSPI02G23340 vs. NCBI nr
Match: gi|449441924|ref|XP_004138732.1| (PREDICTED: uncharacterized protein LOC101218289 isoform X1 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-12
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 25  KAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           KAVYVYPTMIL VICAFSSVKYDVKKV RGAPARPIAKP QS
Sbjct: 167 KAVYVYPTMILAVICAFSSVKYDVKKVARGAPARPIAKPLQS 208

[Close]

BLAST of CSPI02G23340 vs. NCBI nr
Match: gi|659088844|ref|XP_008445191.1| (PREDICTED: uncharacterized protein LOC103488297 isoform X1 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-12
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 25  KAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           KAVYVYPTMIL VICAFSSVKYDVKKV RGAPARPIAKP QS
Sbjct: 167 KAVYVYPTMILAVICAFSSVKYDVKKVVRGAPARPIAKPLQS 208

[Close]

BLAST of CSPI02G23340 vs. NCBI nr
Match: gi|659088846|ref|XP_008445192.1| (PREDICTED: uncharacterized protein LOC103488297 isoform X2 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-12
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 25  KAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           KAVYVYPTMIL VICAFSSVKYDVKKV RGAPARPIAKP QS
Sbjct: 167 KAVYVYPTMILAVICAFSSVKYDVKKVVRGAPARPIAKPLQS 208

[Close]

BLAST of CSPI02G23340 vs. NCBI nr
Match: gi|659088848|ref|XP_008445193.1| (PREDICTED: uncharacterized protein LOC103488297 isoform X3 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-12
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 25  KAVYVYPTMILTVICAFSSVKYDVKKVPRGAPARPIAKPPQS 67
           KAVYVYPTMIL VICAFSSVKYDVKKV RGAPARPIAKP QS
Sbjct: 167 KAVYVYPTMILAVICAFSSVKYDVKKVVRGAPARPIAKPLQS 208

The following BLAST results are available for this feature:

BLAST of CSPI02G23340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G23340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMA1_CUCSA	3.8e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380620 PE=4 SV=1	[more]
A0A0A0LMA7_CUCSA	2.6e-12	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381640 PE=4 SV=1	[more]
B9RP71_RICCO	6.4e-11	85.71	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0924570 PE=4 SV=1	[more]
A0A0B0MEG5_GOSAR	5.4e-10	80.95	Putative tail fiber OS=Gossypium arboreum GN=F383_15781 PE=4 SV=1	[more]
A0A0D2R545_GOSRA	7.1e-10	77.27	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G274300 PE=4 SV=1	[more]

BLAST of CSPI02G23340 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11280.1	1.5e-11	69.05	unknown protein	[more]

BLAST of CSPI02G23340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207814\|gb\|KGN62933.1\|	5.5e-32	100.00	hypothetical protein Csa_2G380620 [Cucumis sativus]	[more]
gi\|449441924\|ref\|XP_004138732.1\|	3.7e-12	92.86	PREDICTED: uncharacterized protein LOC101218289 isoform X1 [Cucumis sativus]	[more]
gi\|659088844\|ref\|XP_008445191.1\|	4.9e-12	92.86	PREDICTED: uncharacterized protein LOC103488297 isoform X1 [Cucumis melo]	[more]
gi\|659088846\|ref\|XP_008445192.1\|	4.9e-12	92.86	PREDICTED: uncharacterized protein LOC103488297 isoform X2 [Cucumis melo]	[more]
gi\|659088848\|ref\|XP_008445193.1\|	4.9e-12	92.86	PREDICTED: uncharacterized protein LOC103488297 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G23340.1	CSPI02G23340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35288	FAMILY NOT NAMED	coord: 25..66 score: 1.9
None	No IPR available	PANTHER	PTHR35288:SF1	SUBFAMILY NOT NAMED	coord: 25..66 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G23340	Csa2G380620	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G23340	Bhi04G000797	Wax gourd	cpiwgoB160

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G23340	Wild cucumber (PI 183967)	cpicpiB055
CSPI02G23340	Wild cucumber (PI 183967)	cpicpiB072
CSPI02G23340	Wild cucumber (PI 183967)	cpicpiB097
CSPI02G23340	Cucumber (Gy14) v1	cgycpiB101
CSPI02G23340	Cucumber (Gy14) v1	cgycpiB239
CSPI02G23340	Cucurbita maxima (Rimu)	cmacpiB165
CSPI02G23340	Cucurbita maxima (Rimu)	cmacpiB442
CSPI02G23340	Cucurbita maxima (Rimu)	cmacpiB801
CSPI02G23340	Cucurbita moschata (Rifu)	cmocpiB150
CSPI02G23340	Cucurbita moschata (Rifu)	cmocpiB431
CSPI02G23340	Cucurbita moschata (Rifu)	cmocpiB788
CSPI02G23340	Cucumber (Chinese Long) v2	cpicuB067
CSPI02G23340	Cucumber (Chinese Long) v2	cpicuB101
CSPI02G23340	Melon (DHL92) v3.5.1	cpimeB118
CSPI02G23340	Melon (DHL92) v3.5.1	cpimeB150
CSPI02G23340	Watermelon (Charleston Gray)	cpiwcgB107
CSPI02G23340	Watermelon (Charleston Gray)	cpiwcgB100
CSPI02G23340	Watermelon (Charleston Gray)	cpiwcgB166
CSPI02G23340	Watermelon (Charleston Gray)	cpiwcgB168
CSPI02G23340	Watermelon (97103) v1	cpiwmB109
CSPI02G23340	Watermelon (97103) v1	cpiwmB112
CSPI02G23340	Watermelon (97103) v1	cpiwmB124
CSPI02G23340	Cucurbita pepo (Zucchini)	cpecpiB101
CSPI02G23340	Cucurbita pepo (Zucchini)	cpecpiB544
CSPI02G23340	Cucurbita pepo (Zucchini)	cpecpiB811
CSPI02G23340	Bottle gourd (USVL1VR-Ls)	cpilsiB112
CSPI02G23340	Bottle gourd (USVL1VR-Ls)	cpilsiB136
CSPI02G23340	Bottle gourd (USVL1VR-Ls)	cpilsiB139
CSPI02G23340	Melon (DHL92) v3.6.1	cpimedB102
CSPI02G23340	Melon (DHL92) v3.6.1	cpimedB114
CSPI02G23340	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G23340	Cucumber (Gy14) v2	cgybcpiB061
CSPI02G23340	Cucumber (Gy14) v2	cgybcpiB312
CSPI02G23340	Silver-seed gourd	carcpiB0155
CSPI02G23340	Silver-seed gourd	carcpiB0225
CSPI02G23340	Silver-seed gourd	carcpiB1010
CSPI02G23340	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G23340	Cucumber (Chinese Long) v3	cpicucB084
CSPI02G23340	Cucumber (Chinese Long) v3	cpicucB102
CSPI02G23340	Cucumber (Chinese Long) v3	cpicucB125
CSPI02G23340	Watermelon (97103) v2	cpiwmbB110
CSPI02G23340	Watermelon (97103) v2	cpiwmbB160
CSPI02G23340	Watermelon (97103) v2	cpiwmbB162
CSPI02G23340	Watermelon (97103) v2	cpiwmbB172
CSPI02G23340	Wax gourd	cpiwgoB208