CSPI02G22980 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G22980
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 19910746 .. 19910988 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAAATTCAGAGAAAAAGGGGAAGCAGAACCCTAGATCTGGATCGAAATCGCCATTCACCCCAATCGACCAGAAACGCGTTGAATATCCCGTCGGTGCAGTTAATCGAACGTAGAAGAAACAAATTGGAGATGAAAGAGAGCAAGAAATCGATTGAGTTTGATCACAGATTGAAATTGAAGGCGAAAGGGAATGAAATTGGGGGAAAGAAGAACAAATATGGCGGTAACGGACGTAGT

mRNA sequence

ATGCACAAAATTCAGAGAAAAAGGGGAAGCAGAACCCTAGATCTGGATCGAAATCGCCATTCACCCCAATCGACCAGAAACGCGTTGAATATCCCGTCGGTGCAGTTAATCGAACGTAGAAGAAACAAATTGGAGATGAAAGAGAGCAAGAAATCGATTGAGTTTGATCACAGATTGAAATTGAAGGCGAAAGGGAATGAAATTGGGGGAAAGAAGAACAAATATGGCGGTAACGGACGTAGT

Coding sequence (CDS)

ATGCACAAAATTCAGAGAAAAAGGGGAAGCAGAACCCTAGATCTGGATCGAAATCGCCATTCACCCCAATCGACCAGAAACGCGTTGAATATCCCGTCGGTGCAGTTAATCGAACGTAGAAGAAACAAATTGGAGATGAAAGAGAGCAAGAAATCGATTGAGTTTGATCACAGATTGAAATTGAAGGCGAAAGGGAATGAAATTGGGGGAAAGAAGAACAAATATGGCGGTAACGGACGTAGT
Homology
[Close]
BLAST of CSPI02G22980 vs. TrEMBL
Match: A0A0A0LSB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379230 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.7e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MHKIQRKRGSRTLDLDRNRHSPQSTRNALNIPSVQLIERRRNKLEMKESKKSIEFDHRLK 60
          MHKIQRKRGSRTLDLDRNRHSPQSTRNALNIPSVQLIERRRNKLEMKESKKSIEFDHRLK
Sbjct: 1  MHKIQRKRGSRTLDLDRNRHSPQSTRNALNIPSVQLIERRRNKLEMKESKKSIEFDHRLK 60

Query: 61 LKAKGNEIGGKKNKYGGNGRS 82
          LKAKGNEIGGKKNKYGGNGRS
Sbjct: 61 LKAKGNEIGGKKNKYGGNGRS 81

[Close]
BLAST of CSPI02G22980 vs. NCBI nr
Match: gi|700207772|gb|KGN62891.1| (hypothetical protein Csa_2G379230 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 8.2e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1  MHKIQRKRGSRTLDLDRNRHSPQSTRNALNIPSVQLIERRRNKLEMKESKKSIEFDHRLK 60
          MHKIQRKRGSRTLDLDRNRHSPQSTRNALNIPSVQLIERRRNKLEMKESKKSIEFDHRLK
Sbjct: 1  MHKIQRKRGSRTLDLDRNRHSPQSTRNALNIPSVQLIERRRNKLEMKESKKSIEFDHRLK 60

Query: 61 LKAKGNEIGGKKNKYGGNGRS 82
          LKAKGNEIGGKKNKYGGNGRS
Sbjct: 61 LKAKGNEIGGKKNKYGGNGRS 81

The following BLAST results are available for this feature:
BLAST of CSPI02G22980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G22980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSB3_CUCSA5.7e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379230 PE=4 SV=1[more]
BLAST of CSPI02G22980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G22980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207772|gb|KGN62891.1|8.2e-35100.00hypothetical protein Csa_2G379230 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G22980.1CSPI02G22980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G22980Csa2G379230Cucumber (Chinese Long) v2cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G22980Bottle gourd (USVL1VR-Ls)cpilsiB120
CSPI02G22980Bottle gourd (USVL1VR-Ls)cpilsiB136
CSPI02G22980Bottle gourd (USVL1VR-Ls)cpilsiB139
CSPI02G22980Melon (DHL92) v3.6.1cpimedB119
CSPI02G22980Melon (DHL92) v3.6.1cpimedB114
CSPI02G22980Cucumber (Gy14) v2cgybcpiB057
CSPI02G22980Cucumber (Gy14) v2cgybcpiB105
CSPI02G22980Silver-seed gourdcarcpiB0063
CSPI02G22980Silver-seed gourdcarcpiB0664
CSPI02G22980Silver-seed gourdcarcpiB1010
CSPI02G22980Silver-seed gourdcarcpiB1014
CSPI02G22980Cucumber (Chinese Long) v3cpicucB081
CSPI02G22980Cucumber (Chinese Long) v3cpicucB095
CSPI02G22980Watermelon (97103) v2cpiwmbB143
CSPI02G22980Watermelon (97103) v2cpiwmbB160
CSPI02G22980Watermelon (97103) v2cpiwmbB162
CSPI02G22980Wax gourdcpiwgoB160
CSPI02G22980Wax gourdcpiwgoB202
CSPI02G22980Wild cucumber (PI 183967)cpicpiB066
CSPI02G22980Cucumber (Gy14) v1cgycpiB239
CSPI02G22980Cucumber (Gy14) v1cgycpiB469
CSPI02G22980Cucurbita maxima (Rimu)cmacpiB013
CSPI02G22980Cucurbita maxima (Rimu)cmacpiB165
CSPI02G22980Cucurbita maxima (Rimu)cmacpiB179
CSPI02G22980Cucurbita maxima (Rimu)cmacpiB442
CSPI02G22980Cucurbita maxima (Rimu)cmacpiB445
CSPI02G22980Cucurbita maxima (Rimu)cmacpiB794
CSPI02G22980Cucurbita moschata (Rifu)cmocpiB003
CSPI02G22980Cucurbita moschata (Rifu)cmocpiB150
CSPI02G22980Cucurbita moschata (Rifu)cmocpiB164
CSPI02G22980Cucurbita moschata (Rifu)cmocpiB431
CSPI02G22980Cucurbita moschata (Rifu)cmocpiB434
CSPI02G22980Cucurbita moschata (Rifu)cmocpiB783
CSPI02G22980Cucumber (Chinese Long) v2cpicuB075
CSPI02G22980Melon (DHL92) v3.5.1cpimeB118
CSPI02G22980Melon (DHL92) v3.5.1cpimeB124
CSPI02G22980Watermelon (Charleston Gray)cpiwcgB148
CSPI02G22980Watermelon (Charleston Gray)cpiwcgB166
CSPI02G22980Watermelon (Charleston Gray)cpiwcgB168
CSPI02G22980Watermelon (97103) v1cpiwmB112
CSPI02G22980Watermelon (97103) v1cpiwmB124
CSPI02G22980Watermelon (97103) v1cpiwmB133
CSPI02G22980Cucurbita pepo (Zucchini)cpecpiB093
CSPI02G22980Cucurbita pepo (Zucchini)cpecpiB540
CSPI02G22980Cucurbita pepo (Zucchini)cpecpiB775
CSPI02G22980Cucurbita pepo (Zucchini)cpecpiB811
CSPI02G22980Cucurbita pepo (Zucchini)cpecpiB819
CSPI02G22980Cucurbita pepo (Zucchini)cpecpiB826