CSPI02G19660 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G19660
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mediator of RNA polymerase II transcription subunit 18
Location	Chr2 : 17744757 .. 17747145 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATCGTTGGTTCAAACTTTGAACTTGAAGGCAGTGGAAGTGGAGATACAGCTTGGAATTTGAAGCTTCGGGATATGCCCATGATTTCAAACTGAACCAAATCCAAGTGGCCGCAGCTTAGACTTCAATGGAGTGTGTGGTTCAGGGCATAATTGAAACCCAGGCAAGTTCCTTTTTCCTTTTCATTTCTGATTAATTTTCTTCTAGGTTTTCCGTTTTACCAAGTATAATTCATCTATTCTTGAAATCTACTCAACCCTTTTATTCGTTCTCTTCATAAGATCTTGAAATAATAAGCACTTATGTTCTAGTTGACCCTTGAATCAATGTCTTCCTGCATTCTGCTAGTGCTCGCCATTCTTTATGACTATTATCTGTTATTGTCTACCACTTTCAATGAAGGTTACTTTTTCCCTTGGTTATTCCTTACTTGACAGTAGCAAGAAGTTTTGTGCTTTCGACTTTTATTCTTGACAGTTTGATTCTGCAGCACGTTGAAGCCCTTGAGATACTTCTTCAAGGTATTTGCGGCGTTCCTAGAGAAAGATTGAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAGCCTAGGTATCCTTGTTTTTCTTTATCCTATTATTTCATATTTTGCATTCTTACCATCTGATGGTACTTTTAAGTTTTATACTAGTTTTTTTTTTAACCCCTGATTTCGTTAGCACTGTTTGATTATATAATATTTAAATTTACCTTAGTCCCTCTTAAGCTTTTTGGTCAATGGGTGATTTAATTGAGTGATTGATACAAGTAGCATTTCTCCAAGTAAAATGGAGGTTGTAGTTTGCTTTTATAATACAATGTCTTATTTCGTAATCAATCAGCATGATTTTAGGTGCTGTAGCATCTGAGGTTCGGATCTTATGCGACCTTGAGCAAGCTGAACCGACATGGTATAATTTGATATTTTGTAGTAATGGTGTGTTGTTTACTTTGAACTTGGAGCCTACTGAACTAATGAGAACTGTCTCCATGAGTTTTTAGGACGGTTAAACATATTGGAGGGGCAATTAGAGGTGCAGGTGCTGAACAACTCTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGTTTATTCTATGCACTTGGCTATAAGTTAGATCATGAGCTGCTGAGAGTTGGTTTTGCCTTCCGCTTCCATCGGGGTGCCCACATAACAGTGACAGTTTCATCAGTTAATAAGATGTTAAAGCTACATTCGACTGATGAGGCTGTACCTGTAACGCCTGGTATACAGCTGGTGGAAGTGACAGCCCCAGCAACTTCTGATAACTATTCTGAAGTAGCCGGGGCAGTGTCGACTTTCTGTGAATATCTTGCACCGTAAGTACTTCTATTGTTAATGAACAATTTCAGTTGATGCATATTCAACAACCTATGAACACTGGAGCTTGATGTTGATTTGAGAAAACCCTCCTTATGTATAGTATATGTGTGTCATCTAACCTAATTTGAACATGAAACGATTCACAATTATCAATCACAATTTGTATGCTGATTGAATTGTTTTTTGACCTCGGTCAGTGTTTAGAAAACCCACTGAGGCCCCTTAATGAAGCCCACTTAAGGGGTGCACGTCAATGTCTTAAACCTGATTTCCTACCTTCTTTTTTGTGTACCATGCAAGAATATTCTTACCATCTTCACTAGAAGCTCTATTTTTTCTGAACGTTTTATCATCCCATTAATCATCATGCTATTTTTCTTCATACGCTATCTTTTTTTAGAGAATACTGACCAGGGCAAAAATAGAGATGAATGAAGTTAAAATGAATTGTTGTATTTCTGCCTTCTGGTATATAGATCGAATTAGAGATCAAATCCCAAATGTGCATGTCTTTAGCTTACTGTTTGTACTTTCTAAAGAGCGACAAAATCAATCTTTCTTCCTCTTTTACTTGTACAGGCTGCTGCATTTGTCGAAACCAGGAATATCCACAGGTGTTGTTCCTACTGCTGCGGCAGCTGCAGCCTCTCTTCTATCTGATGGGGCAGGAACAACAATGTAGATGGTTCGTTACAATGGTTGAACACTGACTGTTTTCTTTGCATTGAAGTTCTTGATCCATCTCTTTCTGAGCCTTGAAGGTTCTCTTGGTATAGATATGGTTGCAGTAAGTTCTGCTGAAGTTTAGGAGTTAACCAAAACTTAATCTAGAAATGATTTTCTATAGTTCCCATTGAGTTTAAAGTAGCAGCTAGGCTGTAGCATATCTCTTTGATATCTTCAAAGAATGAAGCTTATATTTACGTAAATATCTTCAACTACCAGATCTACTCCACCTGTTCAGAATTCTTTTTATCTAAATGATTGAAGAATTATATCGCATTTTGG

mRNA sequence

ATGGAGTGTGTGGTTCAGGGCATAATTGAAACCCAGCACGTTGAAGCCCTTGAGATACTTCTTCAAGGTATTTGCGGCGTTCCTAGAGAAAGATTGAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAGCCTAGGTGCTGTAGCATCTGAGGTTCGGATCTTATGCGACCTTGAGCAAGCTGAACCGACATGGACGGTTAAACATATTGGAGGGGCAATTAGAGGTGCAGGTGCTGAACAACTCTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGTTTATTCTATGCACTTGGCTATAAGTTAGATCATGAGCTGCTGAGAGTTGGTTTTGCCTTCCGCTTCCATCGGGGTGCCCACATAACAGTGACAGTTTCATCAGTTAATAAGATGTTAAAGCTACATTCGACTGATGAGGCTGTACCTGTAACGCCTGGTATACAGCTGGTGGAAGTGACAGCCCCAGCAACTTCTGATAACTATTCTGAAGTAGCCGGGGCAGTGTCGACTTTCTGTGAATATCTTGCACCGCTGCTGCATTTGTCGAAACCAGGAATATCCACAGGTGTTGTTCCTACTGCTGCGGCAGCTGCAGCCTCTCTTCTATCTGATGGGGCAGGAACAACAATGTAG

Coding sequence (CDS)

ATGGAGTGTGTGGTTCAGGGCATAATTGAAACCCAGCACGTTGAAGCCCTTGAGATACTTCTTCAAGGTATTTGCGGCGTTCCTAGAGAAAGATTGAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAGCCTAGGTGCTGTAGCATCTGAGGTTCGGATCTTATGCGACCTTGAGCAAGCTGAACCGACATGGACGGTTAAACATATTGGAGGGGCAATTAGAGGTGCAGGTGCTGAACAACTCTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGTTTATTCTATGCACTTGGCTATAAGTTAGATCATGAGCTGCTGAGAGTTGGTTTTGCCTTCCGCTTCCATCGGGGTGCCCACATAACAGTGACAGTTTCATCAGTTAATAAGATGTTAAAGCTACATTCGACTGATGAGGCTGTACCTGTAACGCCTGGTATACAGCTGGTGGAAGTGACAGCCCCAGCAACTTCTGATAACTATTCTGAAGTAGCCGGGGCAGTGTCGACTTTCTGTGAATATCTTGCACCGCTGCTGCATTTGTCGAAACCAGGAATATCCACAGGTGTTGTTCCTACTGCTGCGGCAGCTGCAGCCTCTCTTCTATCTGATGGGGCAGGAACAACAATGTAG

Homology

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BLAST of CSPI02G19660 vs. Swiss-Prot
Match: MED18_ARATH (Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana GN=MED18 PE=1 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.3e-98
Identity = 176/217 (81.11%), Postives = 204/217 (94.01%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CL+SGP+LG V+SEVR+LCDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTVKH+GGA+RGAGA+Q+SVLVR M+ESKVSKN LR+FYALGYKLDHELL+VGFAF
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F R AHI+V+VSSVNKM K+H+ DEAVPVTPG+Q+V+VTAPATS+NYSEVA AVS+FCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           +LAPL+HLSKP ISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

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BLAST of CSPI02G19660 vs. TrEMBL
Match: A0A0A0LNJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360810 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 4.8e-113
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLS-DGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLS DGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSADGAGTTM 218

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BLAST of CSPI02G19660 vs. TrEMBL
Match: B9T3Q6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0038350 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.7e-102
Identity = 191/217 (88.02%), Postives = 205/217 (94.47%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CLKSGP+LG VASEVR+LCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGIVASEVRLLCDLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTVKH+GGA+RGAGAEQ+SVLVRTMVESK SKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  PEPTWTVKHVGGAMRGAGAEQISVLVRTMVESKASKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F RGA ITV VSSVNKMLKLH+TDEAVPVTPGIQLVEVTAPAT +NYSEV  AVS+FCE
Sbjct: 121 HFQRGARITVRVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPATPENYSEVVAAVSSFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPG+STGVVPTAAAAAASL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTTL 217

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BLAST of CSPI02G19660 vs. TrEMBL
Match: M5XLP4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011256mg PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.9e-102
Identity = 190/217 (87.56%), Postives = 207/217 (95.39%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HEICLKSGP+LGAVASEVR++C+LEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVRRERLRVHEICLKSGPNLGAVASEVRLICNLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTV+HIGGA+RGAGAEQ+SVLVRTMVESK SKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  TEPTWTVRHIGGAMRGAGAEQISVLVRTMVESKASKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F RG  ITVTVSSVNKML+LH+TDEAVPVTPGIQLVEVTAPATS+NY+EV  A+S+FCE
Sbjct: 121 HFQRGTQITVTVSSVNKMLQLHATDEAVPVTPGIQLVEVTAPATSENYTEVVAAISSFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGGTTL 217

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BLAST of CSPI02G19660 vs. TrEMBL
Match: A0A067K0T3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18642 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.9e-102
Identity = 190/217 (87.56%), Postives = 206/217 (94.93%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CLKSGP+LG VASEVR+LCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGLVASEVRLLCDLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTVKH+GGA+RGAGAEQ+SVLVRTMVESK SKNVLRLF+ALGYKLDHELLRVGFAF
Sbjct: 61  PEPTWTVKHVGGAMRGAGAEQISVLVRTMVESKASKNVLRLFHALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F RGA ITVTVSSVNKMLKLH+TDEAVPVTPGIQLVEVTAPAT +NYSEV  A+S+FCE
Sbjct: 121 HFQRGARITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPATPENYSEVVAAMSSFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPG+STGVVPTAAAAAASL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTTL 217

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BLAST of CSPI02G19660 vs. TrEMBL
Match: M5XT22_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011250mg PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 8.5e-102
Identity = 190/217 (87.56%), Postives = 206/217 (94.93%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RE LR+HEICLKSGP+LGAVASEVR++C+LEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVRRENLRVHEICLKSGPNLGAVASEVRLICNLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTV+HIGGA+RGAGAEQ+SVLVRTMVESK SKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  TEPTWTVRHIGGAMRGAGAEQISVLVRTMVESKASKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F RG  ITVTVSSVNKML+LH+TDEAVPVTPGIQLVEVTAPATS+NY+EV  AVS+FCE
Sbjct: 121 HFQRGTQITVTVSSVNKMLQLHATDEAVPVTPGIQLVEVTAPATSENYTEVVAAVSSFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGGTTL 217

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BLAST of CSPI02G19660 vs. TAIR10
Match: AT2G22370.1 (AT2G22370.1 unknown protein)

HSP 1 Score: 360.5 bits (924), Expect = 7.1e-100
Identity = 176/217 (81.11%), Postives = 204/217 (94.01%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CL+SGP+LG V+SEVR+LCDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTVKH+GGA+RGAGA+Q+SVLVR M+ESKVSKN LR+FYALGYKLDHELL+VGFAF
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F R AHI+V+VSSVNKM K+H+ DEAVPVTPG+Q+V+VTAPATS+NYSEVA AVS+FCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           +LAPL+HLSKP ISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

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BLAST of CSPI02G19660 vs. NCBI nr
Match: gi|659087851|ref|XP_008444669.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cucumis melo])

HSP 1 Score: 417.5 bits (1072), Expect = 1.4e-113
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RF+RGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE
Sbjct: 121 RFYRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of CSPI02G19660 vs. NCBI nr
Match: gi|778671225|ref|XP_011649597.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cucumis sativus])

HSP 1 Score: 415.2 bits (1066), Expect = 6.9e-113
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLS-DGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLS DGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSADGAGTTM 218

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BLAST of CSPI02G19660 vs. NCBI nr
Match: gi|255584277|ref|XP_002532875.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Ricinus communis])

HSP 1 Score: 380.2 bits (975), Expect = 2.5e-102
Identity = 191/217 (88.02%), Postives = 205/217 (94.47%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CLKSGP+LG VASEVR+LCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGIVASEVRLLCDLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTVKH+GGA+RGAGAEQ+SVLVRTMVESK SKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  PEPTWTVKHVGGAMRGAGAEQISVLVRTMVESKASKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F RGA ITV VSSVNKMLKLH+TDEAVPVTPGIQLVEVTAPAT +NYSEV  AVS+FCE
Sbjct: 121 HFQRGARITVRVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPATPENYSEVVAAVSSFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPG+STGVVPTAAAAAASL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTTL 217

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BLAST of CSPI02G19660 vs. NCBI nr
Match: gi|802673444|ref|XP_012081604.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Jatropha curcas])

HSP 1 Score: 379.4 bits (973), Expect = 4.2e-102
Identity = 190/217 (87.56%), Postives = 206/217 (94.93%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CLKSGP+LG VASEVR+LCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGLVASEVRLLCDLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTVKH+GGA+RGAGAEQ+SVLVRTMVESK SKNVLRLF+ALGYKLDHELLRVGFAF
Sbjct: 61  PEPTWTVKHVGGAMRGAGAEQISVLVRTMVESKASKNVLRLFHALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F RGA ITVTVSSVNKMLKLH+TDEAVPVTPGIQLVEVTAPAT +NYSEV  A+S+FCE
Sbjct: 121 HFQRGARITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPATPENYSEVVAAMSSFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPG+STGVVPTAAAAAASL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTTL 217

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BLAST of CSPI02G19660 vs. NCBI nr
Match: gi|596287583|ref|XP_007225798.1| (hypothetical protein PRUPE_ppa011256mg [Prunus persica])

HSP 1 Score: 379.4 bits (973), Expect = 4.2e-102
Identity = 190/217 (87.56%), Postives = 207/217 (95.39%), Query Frame = 1


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HEICLKSGP+LGAVASEVR++C+LEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVRRERLRVHEICLKSGPNLGAVASEVRLICNLEQ 60

Query: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EPTWTV+HIGGA+RGAGAEQ+SVLVRTMVESK SKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  TEPTWTVRHIGGAMRGAGAEQISVLVRTMVESKASKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F RG  ITVTVSSVNKML+LH+TDEAVPVTPGIQLVEVTAPATS+NY+EV  A+S+FCE
Sbjct: 121 HFQRGTQITVTVSSVNKMLQLHATDEAVPVTPGIQLVEVTAPATSENYTEVVAAISSFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGGTTL 217

The following BLAST results are available for this feature:

BLAST of CSPI02G19660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED18_ARATH	1.3e-98	81.11	Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana G...	[more]

BLAST of CSPI02G19660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNJ4_CUCSA	4.8e-113	99.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360810 PE=4 SV=1	[more]
B9T3Q6_RICCO	1.7e-102	88.02	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0038350 PE=4 SV=1	[more]
M5XLP4_PRUPE	2.9e-102	87.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011256mg PE=4 SV=1	[more]
A0A067K0T3_JATCU	2.9e-102	87.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18642 PE=4 SV=1	[more]
M5XT22_PRUPE	8.5e-102	87.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011250mg PE=4 SV=1	[more]

BLAST of CSPI02G19660 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22370.1	7.1e-100	81.11	unknown protein	[more]

BLAST of CSPI02G19660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087851\|ref\|XP_008444669.1\|	1.4e-113	99.54	PREDICTED: mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cu...	[more]
gi\|778671225\|ref\|XP_011649597.1\|	6.9e-113	99.54	PREDICTED: mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cu...	[more]
gi\|255584277\|ref\|XP_002532875.1\|	2.5e-102	88.02	PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Ricinus commu...	[more]
gi\|802673444\|ref\|XP_012081604.1\|	4.2e-102	87.56	PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Jatropha curc...	[more]
gi\|596287583\|ref\|XP_007225798.1\|	4.2e-102	87.56	hypothetical protein PRUPE_ppa011256mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048440	carpel development
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0048441	petal development
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
biological_process	GO:0010219	regulation of vernalization response
biological_process	GO:0048442	sepal development
biological_process	GO:0048833	specification of floral organ number
biological_process	GO:0048443	stamen development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G19660.1	CSPI02G19660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13321	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18	coord: 1..206 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G19660	Cla022524	Watermelon (97103) v1	cpiwmB116
CSPI02G19660	Csa2G360810	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G19660	MELO3C010912	Melon (DHL92) v3.5.1	cpimeB118
CSPI02G19660	ClCG08G015430	Watermelon (Charleston Gray)	cpiwcgB172
CSPI02G19660	MELO3C010912.2	Melon (DHL92) v3.6.1	cpimedB114
CSPI02G19660	CsaV3_2G028360	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G19660	Cla97C08G159010	Watermelon (97103) v2	cpiwmbB166
CSPI02G19660	Bhi04G000259	Wax gourd	cpiwgoB159
CSPI02G19660	Cucsa.232460	Cucumber (Gy14) v1	cgycpiB341
CSPI02G19660	Cp4.1LG07g04640	Cucurbita pepo (Zucchini)	cpecpiB820
CSPI02G19660	Carg04077	Silver-seed gourd	carcpiB1012

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G19660	Watermelon (97103) v2	cpiwmbB103
CSPI02G19660	Watermelon (97103) v2	cpiwmbB137
CSPI02G19660	Wax gourd	cpiwgoB187
CSPI02G19660	Wax gourd	cpiwgoB198
CSPI02G19660	Wild cucumber (PI 183967)	cpicpiB058
CSPI02G19660	Wild cucumber (PI 183967)	cpicpiB074
CSPI02G19660	Wild cucumber (PI 183967)	cpicpiB087
CSPI02G19660	Cucumber (Gy14) v1	cgycpiB118
CSPI02G19660	Cucumber (Gy14) v1	cgycpiB163
CSPI02G19660	Cucumber (Gy14) v1	cgycpiB502
CSPI02G19660	Cucurbita maxima (Rimu)	cmacpiB011
CSPI02G19660	Cucurbita maxima (Rimu)	cmacpiB175
CSPI02G19660	Cucurbita maxima (Rimu)	cmacpiB662
CSPI02G19660	Cucurbita maxima (Rimu)	cmacpiB793
CSPI02G19660	Cucurbita maxima (Rimu)	cmacpiB868
CSPI02G19660	Cucurbita moschata (Rifu)	cmocpiB002
CSPI02G19660	Cucurbita moschata (Rifu)	cmocpiB160
CSPI02G19660	Cucurbita moschata (Rifu)	cmocpiB428
CSPI02G19660	Cucurbita moschata (Rifu)	cmocpiB782
CSPI02G19660	Cucurbita moschata (Rifu)	cmocpiB848
CSPI02G19660	Cucumber (Chinese Long) v2	cpicuB070
CSPI02G19660	Cucumber (Chinese Long) v2	cpicuB093
CSPI02G19660	Melon (DHL92) v3.5.1	cpimeB158
CSPI02G19660	Watermelon (Charleston Gray)	cpiwcgB124
CSPI02G19660	Watermelon (Charleston Gray)	cpiwcgB136
CSPI02G19660	Watermelon (Charleston Gray)	cpiwcgB144
CSPI02G19660	Watermelon (97103) v1	cpiwmB129
CSPI02G19660	Watermelon (97103) v1	cpiwmB153
CSPI02G19660	Cucurbita pepo (Zucchini)	cpecpiB092
CSPI02G19660	Cucurbita pepo (Zucchini)	cpecpiB541
CSPI02G19660	Cucurbita pepo (Zucchini)	cpecpiB773
CSPI02G19660	Bottle gourd (USVL1VR-Ls)	cpilsiB104
CSPI02G19660	Bottle gourd (USVL1VR-Ls)	cpilsiB141
CSPI02G19660	Melon (DHL92) v3.6.1	cpimedB142
CSPI02G19660	Melon (DHL92) v3.6.1	cpimedB150
CSPI02G19660	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G19660	Cucumber (Gy14) v2	cgybcpiB261
CSPI02G19660	Cucumber (Gy14) v2	cgybcpiB305
CSPI02G19660	Silver-seed gourd	carcpiB0115
CSPI02G19660	Silver-seed gourd	carcpiB0209
CSPI02G19660	Silver-seed gourd	carcpiB0438
CSPI02G19660	Silver-seed gourd	carcpiB0839
CSPI02G19660	Cucumber (Chinese Long) v3	cpicucB089
CSPI02G19660	Cucumber (Chinese Long) v3	cpicucB103
CSPI02G19660	Cucumber (Chinese Long) v3	cpicucB114