CSPI02G19210 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G19210
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 17522331 .. 17522522 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCCCTAAGCTCTACGGGGTTTATGATCAATTCATTCCAGAAAGCTTTCTATGGGATGGCTTTTGCTGACAAAGATGGTGATGGTTTCTGTGATGAAAACGAGTTGGAGAAACTCGTCGACCATGTCATGAGGTTTAATAATGCAAAGCAACGGCAGGATGATAAATCAAATCGATCGACCAAGTAA

mRNA sequence

ATGCAAGCCCTAAGCTCTACGGGGTTTATGATCAATTCATTCCAGAAAGCTTTCTATGGGATGGCTTTTGCTGACAAAGATGGTGATGGTTTCTGTGATGAAAACGAGTTGGAGAAACTCGTCGACCATGTCATGAGGTTTAATAATGCAAAGCAACGGCAGGATGATAAATCAAATCGATCGACCAAGTAA

Coding sequence (CDS)

ATGCAAGCCCTAAGCTCTACGGGGTTTATGATCAATTCATTCCAGAAAGCTTTCTATGGGATGGCTTTTGCTGACAAAGATGGTGATGGTTTCTGTGATGAAAACGAGTTGGAGAAACTCGTCGACCATGTCATGAGGTTTAATAATGCAAAGCAACGGCAGGATGATAAATCAAATCGATCGACCAAGTAA
Homology
[Close]
BLAST of CSPI02G19210 vs. TrEMBL
Match: A0A0A0LNG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358890 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.7e-27
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSNR 60
          MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKS+R
Sbjct: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSSR 60

Query: 61 STK 64
          STK
Sbjct: 61 STK 63

[Close]
BLAST of CSPI02G19210 vs. TrEMBL
Match: A0A0A0LRC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-06
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCD--ENELEKLVDHVMRFNNAKQRQDDKS 59
          MQAL+S G M+ SFQKA YG+AFADKDGDG  D    E++ LVD+VMRF  +K    D S
Sbjct: 36 MQALNSMGVMM-SFQKAHYGVAFADKDGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDAS 94

[Close]
BLAST of CSPI02G19210 vs. NCBI nr
Match: gi|700207400|gb|KGN62519.1| (hypothetical protein Csa_2G358890 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSNR 60
          MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKS+R
Sbjct: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSSR 60

Query: 61 STK 64
          STK
Sbjct: 61 STK 63

[Close]
BLAST of CSPI02G19210 vs. NCBI nr
Match: gi|700207402|gb|KGN62521.1| (hypothetical protein Csa_2G359900 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-06
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCD--ENELEKLVDHVMRFNNAKQRQDDKS 59
          MQAL+S G M+ SFQKA YG+AFADKDGDG  D    E++ LVD+VMRF  +K    D S
Sbjct: 36 MQALNSMGVMM-SFQKAHYGVAFADKDGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDAS 94

The following BLAST results are available for this feature:
BLAST of CSPI02G19210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G19210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNG5_CUCSA7.7e-2798.41Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358890 PE=4 SV=1[more]
A0A0A0LRC3_CUCSA1.5e-0658.33Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1[more]
BLAST of CSPI02G19210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G19210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207400|gb|KGN62519.1|1.1e-2698.41hypothetical protein Csa_2G358890 [Cucumis sativus][more]
gi|700207402|gb|KGN62521.1|2.2e-0658.33hypothetical protein Csa_2G359900 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G19210.1CSPI02G19210.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 23..57
score: 4.
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 25..37
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G19210Csa2G358890Cucumber (Chinese Long) v2cpicuB065
CSPI02G19210MELO3C010871.2Melon (DHL92) v3.6.1cpimedB114
CSPI02G19210Cla97C08G159450Watermelon (97103) v2cpiwmbB166
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G19210Wax gourdcpiwgoB159
CSPI02G19210Wax gourdcpiwgoB198
CSPI02G19210Wild cucumber (PI 183967)cpicpiB074
CSPI02G19210Wild cucumber (PI 183967)cpicpiB091
CSPI02G19210Cucumber (Gy14) v1cgycpiB331
CSPI02G19210Cucumber (Gy14) v1cgycpiB341
CSPI02G19210Cucurbita maxima (Rimu)cmacpiB011
CSPI02G19210Cucurbita maxima (Rimu)cmacpiB175
CSPI02G19210Cucurbita maxima (Rimu)cmacpiB439
CSPI02G19210Cucurbita maxima (Rimu)cmacpiB513
CSPI02G19210Cucurbita maxima (Rimu)cmacpiB793
CSPI02G19210Cucurbita moschata (Rifu)cmocpiB002
CSPI02G19210Cucurbita moschata (Rifu)cmocpiB160
CSPI02G19210Cucurbita moschata (Rifu)cmocpiB428
CSPI02G19210Cucurbita moschata (Rifu)cmocpiB782
CSPI02G19210Cucumber (Chinese Long) v2cpicuB080
CSPI02G19210Cucumber (Chinese Long) v2cpicuB096
CSPI02G19210Melon (DHL92) v3.5.1cpimeB105
CSPI02G19210Melon (DHL92) v3.5.1cpimeB118
CSPI02G19210Melon (DHL92) v3.5.1cpimeB148
CSPI02G19210Watermelon (Charleston Gray)cpiwcgB136
CSPI02G19210Watermelon (Charleston Gray)cpiwcgB144
CSPI02G19210Watermelon (Charleston Gray)cpiwcgB172
CSPI02G19210Watermelon (97103) v1cpiwmB116
CSPI02G19210Watermelon (97103) v1cpiwmB129
CSPI02G19210Watermelon (97103) v1cpiwmB153
CSPI02G19210Cucurbita pepo (Zucchini)cpecpiB092
CSPI02G19210Cucurbita pepo (Zucchini)cpecpiB541
CSPI02G19210Cucurbita pepo (Zucchini)cpecpiB773
CSPI02G19210Cucurbita pepo (Zucchini)cpecpiB820
CSPI02G19210Bottle gourd (USVL1VR-Ls)cpilsiB114
CSPI02G19210Bottle gourd (USVL1VR-Ls)cpilsiB141
CSPI02G19210Melon (DHL92) v3.6.1cpimedB100
CSPI02G19210Melon (DHL92) v3.6.1cpimedB142
CSPI02G19210Cucumber (Gy14) v2cgybcpiB057
CSPI02G19210Cucumber (Gy14) v2cgybcpiB163
CSPI02G19210Cucumber (Gy14) v2cgybcpiB305
CSPI02G19210Silver-seed gourdcarcpiB0209
CSPI02G19210Silver-seed gourdcarcpiB0806
CSPI02G19210Cucumber (Chinese Long) v3cpicucB081
CSPI02G19210Cucumber (Chinese Long) v3cpicucB103
CSPI02G19210Watermelon (97103) v2cpiwmbB137