CSPI02G18070 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G18070
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 16817312 .. 16817507 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAACCAACCAGGGTATCGGGTTATAGTTTGTTCGTTACAGGGCGCTCGTGAGGTTTCTGTCAATGTGCGATGGAAGGGGAACGCGGCGTCGGTGACTCGTCTTGACTCGGACGATTCGAAGGGACGAGTTGAAATTTTTCCCCCAAATAATGTAGTGGTGGAATTGTTGAAGAGATTTGGTGGTATATAA

mRNA sequence

ATGGTTAAACCAACCAGGGGCGCTCGTGAGGTTTCTGTCAATGTGCGATGGAAGGGGAACGCGGCGTCGGTGACTCGTCTTGACTCGGACGATTCGAAGGGACGAGTTGAAATTTTTCCCCCAAATAATGTAGTGGTGGAATTGTTGAAGAGATTTGGTGGTATATAA

Coding sequence (CDS)

ATGGTTAAACCAACCAGGGGCGCTCGTGAGGTTTCTGTCAATGTGCGATGGAAGGGGAACGCGGCGTCGGTGACTCGTCTTGACTCGGACGATTCGAAGGGACGAGTTGAAATTTTTCCCCCAAATAATGTAGTGGTGGAATTGTTGAAGAGATTTGGTGGTATATAA
Homology
[Close]
BLAST of CSPI02G18070 vs. TrEMBL
Match: A0A0A0LNM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351780 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.7e-23
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MVKPTRGAREVSVNVRWKGNAASVTRLDSDDSKGRVEIFPPNNVVVELLKRFGGI 56
          MVKPTRGAREVSVNVRWKGNAASVTR+DSDDSKGRVEIFPPNNVVVELLKRFGGI
Sbjct: 1  MVKPTRGAREVSVNVRWKGNAASVTRIDSDDSKGRVEIFPPNNVVVELLKRFGGI 55

[Close]
BLAST of CSPI02G18070 vs. NCBI nr
Match: gi|700207278|gb|KGN62397.1| (hypothetical protein Csa_2G351780 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 1  MVKPTRGAREVSVNVRWKGNAASVTRLDSDDSKGRVEIFPPNNVVVELLKRFGGI 56
          MVKPTRGAREVSVNVRWKGNAASVTR+DSDDSKGRVEIFPPNNVVVELLKRFGGI
Sbjct: 1  MVKPTRGAREVSVNVRWKGNAASVTRIDSDDSKGRVEIFPPNNVVVELLKRFGGI 55

The following BLAST results are available for this feature:
BLAST of CSPI02G18070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G18070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNM1_CUCSA7.7e-2398.18Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351780 PE=4 SV=1[more]
BLAST of CSPI02G18070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G18070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207278|gb|KGN62397.1|1.1e-2298.18hypothetical protein Csa_2G351780 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G18070.1CSPI02G18070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G18070Csa2G351780Cucumber (Chinese Long) v2cpicuB065
CSPI02G18070CsaV3_2G025650Cucumber (Chinese Long) v3cpicucB081
CSPI02G18070CsGy2G018000Cucumber (Gy14) v2cgybcpiB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G18070Cucurbita pepo (Zucchini)cpecpiB092
CSPI02G18070Cucurbita pepo (Zucchini)cpecpiB541
CSPI02G18070Cucurbita pepo (Zucchini)cpecpiB820
CSPI02G18070Bottle gourd (USVL1VR-Ls)cpilsiB114
CSPI02G18070Bottle gourd (USVL1VR-Ls)cpilsiB141
CSPI02G18070Melon (DHL92) v3.6.1cpimedB114
CSPI02G18070Melon (DHL92) v3.6.1cpimedB142
CSPI02G18070Cucumber (Gy14) v2cgybcpiB163
CSPI02G18070Silver-seed gourdcarcpiB0209
CSPI02G18070Silver-seed gourdcarcpiB0352
CSPI02G18070Silver-seed gourdcarcpiB0732
CSPI02G18070Silver-seed gourdcarcpiB0806
CSPI02G18070Cucumber (Chinese Long) v3cpicucB103
CSPI02G18070Watermelon (97103) v2cpiwmbB141
CSPI02G18070Watermelon (97103) v2cpiwmbB166
CSPI02G18070Wax gourdcpiwgoB159
CSPI02G18070Wax gourdcpiwgoB198
CSPI02G18070Wild cucumber (PI 183967)cpicpiB074
CSPI02G18070Cucumber (Gy14) v1cgycpiB578
CSPI02G18070Cucurbita maxima (Rimu)cmacpiB011
CSPI02G18070Cucurbita maxima (Rimu)cmacpiB175
CSPI02G18070Cucurbita maxima (Rimu)cmacpiB439
CSPI02G18070Cucurbita maxima (Rimu)cmacpiB793
CSPI02G18070Cucurbita moschata (Rifu)cmocpiB002
CSPI02G18070Cucurbita moschata (Rifu)cmocpiB160
CSPI02G18070Cucurbita moschata (Rifu)cmocpiB782
CSPI02G18070Cucumber (Chinese Long) v2cpicuB080
CSPI02G18070Melon (DHL92) v3.5.1cpimeB118
CSPI02G18070Melon (DHL92) v3.5.1cpimeB148
CSPI02G18070Watermelon (Charleston Gray)cpiwcgB147
CSPI02G18070Watermelon (Charleston Gray)cpiwcgB172
CSPI02G18070Watermelon (97103) v1cpiwmB116
CSPI02G18070Watermelon (97103) v1cpiwmB132