CSPI02G16360 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G16360
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Chr2 : 15759836 .. 15761626 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGATGAACGCAATGCTTATAAGTTCAGGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTAACATCAAATTATTTATTAAACAGAATTCCTCATAAGAAGTCACAAAATATTTCTTATGAAAAATGGAAAGGAAGAAAACTTTCATATAAATTCTTAAAAGTATGGGGGTGCCTAGCAAAGGTTGTCATGCCTAAACCTAAAATGGTTAAAATTGGACCAAAAACTATTGATTGCATATTCATTGGTTATGCTAGTAACAGTTGTGCATATCGATTTATAGTTCATAAATCAGATATTTCAGATATACATGTTAATACAATCATGGTATCGAGGAATGCAACATTCTTTGAGAATATTTTTCCTCATAAAATGTTTTGTGAAGCAAGGTTACAAAAACGTTCGTTTGATGCTATAACGAGTGAATATCACAATAGATCAAATGTTGAGTTAACGAACAATGAGGAACTCCGACAAAGTAAAAGGATGAGGATCTCAAAATCATTTGGTCCTGATTATTTAACTTATTTGTTAGAAAACGAACCTCAAACATTTAAAGAGGCCATGTCCTCTCCTGAAGCTTCATATTGGAAAGAGGCTGTGAATAGTGAAATTGAGTCCATTATGCATAACCATACTTGGGAACCAGTTAATCTTCCATTAGTAAGTAAACCACCTGGTTGCAAGTGGATTTTCAAATGGAAATTGAAGACCGATGGGTCAATAGATAAATATAAAGCAAGACTTGTCGCTAAAGGTTACAAGCAACAAGAAGGACTTGACTATTTTGTTACATACTCACCAGTTACTCGAATTACTTCCATTCGCATGCTCATAGCAACATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGACATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATGCAACAACCCGAAAGGTTTGTTTCTTTAAGTCAAGAAAAGAAAGTCTGCAAAATTAATTAGGTCTCTTTATGAACTAAAACAAGCATCGAAACAATGGCATGAAAAATTTGGCAGTGCAATGATGGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATGTCAAAAACAATGAGCATGACCATGTCATTGTGTGCTTATATGTTGATGATATGCTAATTATAGGTAGCAATATCAACATTATTAAGAAAACCAAACAAATGTTGGCCAATAAATTTGAGATGAAAGACATGGGTGTCGCAGATGTTATTCTAGGTATCAAAAAATTCTAGAACCCCACAAGGGTTAGTGCTATCTCAATCACATTATATTGATAAAATATTGAAGAAATATACAAAACATGAAATTGTGATTGCAAAGACCCCAATTGATGGAAGTCTCCATTTAAGTAAAAATAATGGAGATAGTATAGCACAATTGGAATACTCTCGCATCATTGGTAGTTTGATGTGCATCATGAGTTGTACACGTCCTGATATAGCGTATGCGGTAAGCAAATTAAGTCGCTATACAAGTAATCCAGGTCGTGATCATTGGAAAGTTATCTTGAGAGTTTTGGGATACTTAAAGCATACTAAAAATTATGGAATAAACTATACTCGATATCCTGCTGTACTTGAAGGCTATAGTGATGTCAATTGGATATCGAGCACTAAAGACTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAGGCGGTGCTGTTTCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCCACAATGGAATTTGAATTTATAGCCTTAGACAAGGCTGGAGAAGAAGCATAA

mRNA sequence

ATGATGAACGCAATGCTTATAAGTTCAGGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTAACATCAAATTATTTATTAAACAGAATTCCTCATAAGAAGTCACAAAATATTTCTTATGAAAAATGGAAAGGAAGAAAACTTTCATATAAATTCTTAAAAGTATGGGGGTGCCTAGCAAAGGTTGTCATGCCTAAACCTAAAATGGTTAAAATTGGACCAAAAACTATTGATTGCATATTCATTGGTTATGCTAGTAACAGTTGTGCATATCGATTTATAGTTCATAAATCAGATATTTCAGATATACATGTTAATACAATCATGGTATCGAGGAATGCAACATTCTTTGAGAATATTTTTCCTCATAAAATGTTTTGTGAAGCAAGGTTACAAAAACGTTCGTTTGATGCTATAACGAGTGAATATCACAATAGATCAAATGTTGAGTTAACGAACAATGAGGAACTCCGACAAAGTAAAAGGATGAGGATCTCAAAATCATTTGGTCCTGATTATTTAACTTATTTGTTAGAAAACGAACCTCAAACATTTAAAGAGGCCATGTCCTCTCCTGAAGCTTCATATTGGAAAGAGGCTGTGAATAGTGAAATTGAGTCCATTATGCATAACCATACTTGGGAACCAGTTAATCTTCCATTAGTAAGTAAACCACCTGGTTGCAAGTGGATTTTCAAATGGAAATTGAAGACCGATGGGTCAATAGATAAATATAAAGCAAGACTTGTCGCTAAAGGTTACAAGCAACAAGAAGGACTTGACTATTTTGTTACATACTCACCAGTTACTCGAATTACTTCCATTCGCATGCTCATAGCAACATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGACATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATGCAACAACCCGAAAGTGCAATGATGGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATGTCAAAAACAATGAGCATGACCATGTCATTGTATCAAAAAATTCTAGAACCCCACAAGGGTTAGTGCTATCTCAATCACATTATATTGATAAAATATTGAAGAAATATACAAAACATGAAATTGTGATTGCAAAGACCCCAATTGATGGAAGTCTCCATTTAAGTAAAAATAATGGAGATAGTATAGCACAATTGGAATACTCTCGCATCATTGGTAGTTTGATGTGCATCATGAGTTGTACACGTCCTGATATAGCGTATGCGGTAAGCAAATTAAGTCGCTATACAAGTAATCCAGGTCGTGATCATTGGAAAGTTATCTTGAGAGTTTTGGGATACTTAAAGCATACTAAAAATTATGGAATAAACTATACTCGATATCCTGCTGTACTTGAAGGCTATAGTGATGTCAATTGGATATCGAGCACTAAAGACTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAGGCGGTGCTGTTTCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCCACAATGGAATTTGAATTTATAGCCTTAGACAAGGCTGGAGAAGAAGCATAA

Coding sequence (CDS)

ATGATGAACGCAATGCTTATAAGTTCAGGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTAACATCAAATTATTTATTAAACAGAATTCCTCATAAGAAGTCACAAAATATTTCTTATGAAAAATGGAAAGGAAGAAAACTTTCATATAAATTCTTAAAAGTATGGGGGTGCCTAGCAAAGGTTGTCATGCCTAAACCTAAAATGGTTAAAATTGGACCAAAAACTATTGATTGCATATTCATTGGTTATGCTAGTAACAGTTGTGCATATCGATTTATAGTTCATAAATCAGATATTTCAGATATACATGTTAATACAATCATGGTATCGAGGAATGCAACATTCTTTGAGAATATTTTTCCTCATAAAATGTTTTGTGAAGCAAGGTTACAAAAACGTTCGTTTGATGCTATAACGAGTGAATATCACAATAGATCAAATGTTGAGTTAACGAACAATGAGGAACTCCGACAAAGTAAAAGGATGAGGATCTCAAAATCATTTGGTCCTGATTATTTAACTTATTTGTTAGAAAACGAACCTCAAACATTTAAAGAGGCCATGTCCTCTCCTGAAGCTTCATATTGGAAAGAGGCTGTGAATAGTGAAATTGAGTCCATTATGCATAACCATACTTGGGAACCAGTTAATCTTCCATTAGTAAGTAAACCACCTGGTTGCAAGTGGATTTTCAAATGGAAATTGAAGACCGATGGGTCAATAGATAAATATAAAGCAAGACTTGTCGCTAAAGGTTACAAGCAACAAGAAGGACTTGACTATTTTGTTACATACTCACCAGTTACTCGAATTACTTCCATTCGCATGCTCATAGCAACATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGACATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATGCAACAACCCGAAAGTGCAATGATGGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATGTCAAAAACAATGAGCATGACCATGTCATTGTATCAAAAAATTCTAGAACCCCACAAGGGTTAGTGCTATCTCAATCACATTATATTGATAAAATATTGAAGAAATATACAAAACATGAAATTGTGATTGCAAAGACCCCAATTGATGGAAGTCTCCATTTAAGTAAAAATAATGGAGATAGTATAGCACAATTGGAATACTCTCGCATCATTGGTAGTTTGATGTGCATCATGAGTTGTACACGTCCTGATATAGCGTATGCGGTAAGCAAATTAAGTCGCTATACAAGTAATCCAGGTCGTGATCATTGGAAAGTTATCTTGAGAGTTTTGGGATACTTAAAGCATACTAAAAATTATGGAATAAACTATACTCGATATCCTGCTGTACTTGAAGGCTATAGTGATGTCAATTGGATATCGAGCACTAAAGACTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAGGCGGTGCTGTTTCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCCACAATGGAATTTGAATTTATAGCCTTAGACAAGGCTGGAGAAGAAGCATAA

Homology

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BLAST of CSPI02G16360 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.1e-35
Identity = 111/359 (30.92%), Postives = 172/359 (47.91%), Query Frame = 1


Query: 2   MNAMLISSGLPQNLWGEALLTSNYLLNRIPHKK-SQNISYEKWKGRKLSYKFLKVWGCLA 61
           + +ML  + LP++ WGEA+ T+ YL+NR P    +  I    W  +++SY  LKV+GC A
Sbjct: 596 VRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRA 655

Query: 62  KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 121
              +PK +  K+  K+I CIFIGY      YR       + D     ++ SR+  F E+ 
Sbjct: 656 FAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYR-------LWDPVKKKVIRSRDVVFRESE 715

Query: 122 FPHKMFCEARLQK---RSFDAITSEYHNRSNVELTNNEELRQSKRMRISKSFGPDYLTYL 181
                    +++     +F  I S  +N ++ E T +E   Q ++       G      +
Sbjct: 716 VRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGV 775

Query: 182 LENEPQTFKEAMSSPEASYWKEAVNS----EIESIMHNHTWEPVNL-------------- 241
            E E  T  E    P     +  V S      E ++ +   EP +L              
Sbjct: 776 EEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMK 835

Query: 242 ---------------PLVSKPPG-----CKWIFKWKLKTDGSIDKYKARLVAKGYKQQEG 301
                           LV  P G     CKW+FK K   D  + +YKARLV KG++Q++G
Sbjct: 836 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 895

Query: 302 LDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDVKTTFLNGELDEEIYMQQPESAMMA 319
           +D+   +SPV ++TSIR +++ +A    E+ Q+DVKT FL+G+L+EEIYM+QPE   +A
Sbjct: 896 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947

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BLAST of CSPI02G16360 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-24
Identity = 63/190 (33.16%), Postives = 103/190 (54.21%), Query Frame = 1


Query: 149  VELTNNEELRQSKRMRISKSFGPDYLTYLLENE-------PQTFKEAMSSPEASYWKEAV 208
            +E+ N    R   + +IS +   + L  ++ N        P +F E     + S W+EA+
Sbjct: 851  IEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAI 910

Query: 209  NSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKWKLKTDGSIDKYKARLVAKGYKQQEGLD 268
            N+E+ +   N+TW     P        +W+F  K    G+  +YKARLVA+G+ Q+  +D
Sbjct: 911  NTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQID 970

Query: 269  YFVTYSPVTRITSIRMLIATSALHGFEIHQMDVKTTFLNGELDEEIYMQQPESAMMANGF 328
            Y  T++PV RI+S R +++    +  ++HQMDVKT FLNG L EEIYM+ P+  +  N  
Sbjct: 971  YEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQ-GISCNSD 1030

Query: 329  KINECDKCVY 332
             + + +K +Y
Sbjct: 1031 NVCKLNKAIY 1039

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BLAST of CSPI02G16360 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-17
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1


Query: 174 LTYLLENEPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFK 233
           +T  ++ EP++   A+  P    W +A+  E++++  N TW  V  P+     GCKW+FK
Sbjct: 20  ITTTIKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFK 79

Query: 234 WKLKTDGSIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLI 280
            KL +DG++D+ KARLVAKG+ Q+EG+ +  TYSPV R  +IR ++
Sbjct: 80  TKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122

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BLAST of CSPI02G16360 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-14
Identity = 49/167 (29.34%), Postives = 88/167 (52.69%), Query Frame = 1


Query: 349 PQGLVLSQSHYIDKILKKYTKHEIVIAKTPIDGSLHLSKNNGDSIAQLEYSRIIGSLMCI 408
           P GL LSQ+ Y ++IL      +     TP+   L+ S +        ++  I+G+L   
Sbjct: 51  PSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQ-Y 110

Query: 409 MSCTRPDIAYAVSKLSRYTSNPGRDHWKVILRVLGYLKHTKNYGINYTRYPAV-LEGYSD 468
           ++ TRPDI+YAV+ + +    P    + ++ RVL Y+K T  +G+   +   + ++ + D
Sbjct: 111 LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCD 170

Query: 469 VNWISSTKDSKSTSGYIFTLGGGAVSWKSSKQTCIARSTMEFEFIAL 515
            +W   T   +ST+G+   LG   +SW + +Q  ++RS+ E E+ AL
Sbjct: 171 SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 216

[Close]

BLAST of CSPI02G16360 vs. TrEMBL
Match: Q2QY02_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g04310 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 2.2e-151
Identity = 284/563 (50.44%), Postives = 372/563 (66.07%), Query Frame = 1


Query: 1    MMNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLA 60
            ++NAML ++GLP+  WGEALLTSN++LNR+P++      YE W GRK S  +L+ WGCLA
Sbjct: 475  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 534

Query: 61   KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 120
            KV +P  K  K+GPKT+DC+F+GYA +S AYRF++ KS++ D+HV TIM SR+ATFFE+ 
Sbjct: 535  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 594

Query: 121  FPHKMFCEARLQKRSF--DAITSEYHNRSNVELTNNEEL----RQSKRMRISKSFGPDYL 180
            FP K       Q       +IT         EL + E++    R+SKR R +KSFG D+ 
Sbjct: 595  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 654

Query: 181  TYLLENEPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKW 240
             YL+++ P++  EA +SP+A YWKEAV SE++SI+ N TWE    P   KP GCKW+FK 
Sbjct: 655  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 714

Query: 241  KLKTDGSIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDV 300
            KL+ +G+I+KYKARLVAKGY Q+EG D+F TYSPV R+T+IR+L++ +A HG  +HQMDV
Sbjct: 715  KLRPNGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDV 774

Query: 301  KTTFLNGELDEEIYMQQPE---------------------------------SAMMANGF 360
            KT FLNGELDEEIYM QP+                                   + + GF
Sbjct: 775  KTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 834

Query: 361  KINECDKCVYVKNNEHDHVIVSKNSRTPQGLVLS---QSHYIDKILKKYTKHEIVIAKTP 420
             +NE DKCVY ++   + VI+         L+     +SHY++KIL ++   +   + TP
Sbjct: 835  AVNEADKCVYYRHGGGEGVILCLY--VDDILIFGTNLESHYVEKILNRFGYIDSKPSPTP 894

Query: 421  IDGSLHLSKNNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTSNPGRDHWKVI 480
             D SL L KN   +  QLEYS+IIGSLM + S TRPDI++AVSKLSR+TSNPG DHW+ +
Sbjct: 895  YDPSLLLRKNKRIARNQLEYSQIIGSLMYLTSATRPDISFAVSKLSRFTSNPGDDHWRAL 954

Query: 481  LRVLGYLKHTKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLGGGAVSWKSSK 522
             RV+ YLK T   G++YT YPAVLEGYSD NWIS   + K+TSGY+FTLGGGAVSW+S K
Sbjct: 955  ERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCK 1014

[Close]

BLAST of CSPI02G16360 vs. TrEMBL
Match: A0A151R256_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_042281 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 8.2e-151
Identity = 281/561 (50.09%), Postives = 374/561 (66.67%), Query Frame = 1


Query: 2   MNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLAK 61
           MNA+L SS  P NLWGEALLT+ +L NRIPH+++    YE WKG   + K+L+VWGCLAK
Sbjct: 1   MNALLNSSYAPDNLWGEALLTACFLQNRIPHRRTGKTPYELWKGYVPNLKYLRVWGCLAK 60

Query: 62  VVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENIF 121
           V++P PK  KIGPKT DC+FIGYA  S AYRF+V KS + D   NTI+ ++NA FFENIF
Sbjct: 61  VLLPDPKKRKIGPKTSDCMFIGYAERSAAYRFLVLKSSVIDC--NTIVETKNAEFFENIF 120

Query: 122 PHKMFCEARLQKRSFDAITSEYHNRSNVELTNNEELRQSKRMRISKSFGPDYLTYLLENE 181
           P K        + S    +SE+           E+LR+SKR R   SFG D+ TYL+EN+
Sbjct: 121 PLKSSINTSSTQPSPLETSSEHMF---------EDLRRSKRQRKETSFGSDFYTYLVEND 180

Query: 182 PQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKWKLKTDGS 241
           P +F EA+SS +A +WKEA+  EI+SI  N+TW  V+LP  +KP GCKWIFK K   DGS
Sbjct: 181 PISFSEAISSSDAIFWKEAIRIEIDSINENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGS 240

Query: 242 IDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDVKTTFLNG 301
           I+KYKARLVAKG+ Q++ +D+F T++PV RI+SIR+LIA +++H   IHQMDVKT FLNG
Sbjct: 241 IEKYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLNG 300

Query: 302 ELDEEIYMQQPE---------------------------------SAMMANGFKINECDK 361
           EL+EEIYM QPE                                   ++ +GF  +  DK
Sbjct: 301 ELEEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSADK 360

Query: 362 CVYVKNNEHDHVIVSKN--------SRTPQGLVLSQSHYIDKILKKYTKHEIVIAKTPID 421
           CVY K+   D VI+            R    ++LSQ HY++++LKK+  ++     TP D
Sbjct: 361 CVYTKSMNDDCVIICLYVDDMLIFVVRKGDSILLSQRHYVERLLKKFDYYDCKYVTTPYD 420

Query: 422 GSLHLSKNNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTSNPGRDHWKVILR 481
            +  L +N GDS+AQ +Y++IIGSL+ +M+ +RPDIAYAVS+LSRYT  P +DHW+ + R
Sbjct: 421 VNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIAYAVSRLSRYTHCPNQDHWEALAR 480

Query: 482 VLGYLKHTKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLGGGAVSWKSSKQT 522
           ++ YL+ T +YGI Y+ +PAVLEGYSD NWIS + ++KSTS Y+FTLGGGA+SW+S +Q+
Sbjct: 481 LMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSYYVFTLGGGAISWRSVRQS 540

[Close]

BLAST of CSPI02G16360 vs. TrEMBL
Match: A0A151TB57_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_018882 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 1.3e-148
Identity = 278/573 (48.52%), Postives = 374/573 (65.27%), Query Frame = 1


Query: 1    MMNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLA 60
            MMNA+L SS  P NLWGEALLT+ +L NRIPH+++    YE WKG   + K+L+VWGCLA
Sbjct: 546  MMNALLNSSSAPDNLWGEALLTACFLQNRIPHRRTGKTPYELWKGYVPNLKYLRVWGCLA 605

Query: 61   KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 120
            KV++P PK  KIGPKT DC+FIGYA  S AYRF+V KS + D   NTI+ ++NA FFENI
Sbjct: 606  KVLLPDPKKRKIGPKTSDCMFIGYAERSAAYRFLVLKSSVIDC--NTIVETKNAEFFENI 665

Query: 121  FPHKMFCEARLQKRSFDAITSEYHNRSNVELTNNEELRQSKRMRISKSFGPDYLTYLLEN 180
            FP K        + S    +SE+           E+LR+SKR R   SFG D+ TYL+EN
Sbjct: 666  FPLKSSINTSSTQPSPLETSSEHMF---------EDLRRSKRQRKETSFGSDFYTYLVEN 725

Query: 181  EPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKWKLKTDG 240
            +P +F EA+SS +A +WKEA+  EI+SI  N+TW  V+LP  +KP GCKWIFK K   DG
Sbjct: 726  DPISFSEAISSSDAIFWKEAIRIEIDSIKENNTWTLVDLPKGAKPIGCKWIFKRKYNPDG 785

Query: 241  SIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDVKTTFLN 300
            SI+KYKARLVAKG+ Q++ +D+F T++PV RI+SIR+LIA +++H   IHQMDVKT FLN
Sbjct: 786  SIEKYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLN 845

Query: 301  GELDEEIYMQQPES---------------------------------AMMANGFKINECD 360
            GEL+EEIYM QPE                                   ++ +GF  +  D
Sbjct: 846  GELEEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSAD 905

Query: 361  KCVYVKNNEHDHVIV-------------------SKNSRTPQGLVLSQSHYIDKILKKYT 420
            +CVY K  + D VI+                   +K+       +    HY++++LKK+ 
Sbjct: 906  RCVYTKCMDDDCVIICLYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGHYVERLLKKFD 965

Query: 421  KHEIVIAKTPIDGSLHLSKNNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTS 480
             ++     TP D +  L +N GDS+AQ +Y++IIGSL+ +M+ +RPDIAYAVS+LSRYT 
Sbjct: 966  YYDCKSVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIAYAVSRLSRYTH 1025

Query: 481  NPGRDHWKVILRVLGYLKHTKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLG 522
             P +DHW+ + R++ YL+ T +YGI Y+ +PAVLEGYSD NWIS + ++KSTSGY+FTLG
Sbjct: 1026 CPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSGYVFTLG 1085

[Close]

BLAST of CSPI02G16360 vs. TrEMBL
Match: Q2QRF6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g27730 PE=4 SV=2)

HSP 1 Score: 534.6 bits (1376), Expect = 1.3e-148
Identity = 283/554 (51.08%), Postives = 365/554 (65.88%), Query Frame = 1


Query: 1    MMNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLA 60
            ++NAML ++GLP+  WGEALLTSN++LNR+P++      YE W GRK S  +L+ WGCLA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 61   KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 120
            KV +P  K  K+GPKT+DC+F+GYA +S AYRF++ KS++ D+HV TIM SR+ATFFE+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 121  FPHKMFCEARLQKRSF--DAITSEYHNRSNVELTNNEEL----RQSKRMRISKSFGPDYL 180
            FP K       Q       +IT         EL + E++    R+SKR R +KSFG D+ 
Sbjct: 724  FPMKDTHSGSNQPFEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 181  TYLLENEPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKW 240
             YL+++ P++  EA +SP+A YWKE V+SE++SI+ N TWE    P   KP GCKW+FK 
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEVVHSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 241  KLKTDGSIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDV 300
            KL+ DG+I+KYKARLVAKGY Q+EG D F TYSPV R+T+IR+L++ +A HG  +HQMDV
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDLFDTYSPVARLTTIRVLLSLAASHGLLVHQMDV 903

Query: 301  KTTFLNGELDEEIYMQQPESAMMANGFKINECDKCVYVKNNEHDHVIV------------ 360
            KT FLNGELDEEIYM QP+   +  GF +NE DKCVY ++   + VI+            
Sbjct: 904  KTAFLNGELDEEIYMYQPDG-FVVEGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGT 963

Query: 361  ------SKNSRTPQGLVLSQSHYIDKILK-KYTKHEIVI--------AKTPIDGSLHLSK 420
                     S   Q   +      D IL  K  + ++          + TP D SL L K
Sbjct: 964  NLEVINEVKSFLSQNFDMKDLGVADVILNIKLIREDLESFGYIDSKPSPTPYDPSLLLRK 1023

Query: 421  NNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTSNPGRDHWKVILRVLGYLKH 480
            N   +  QLEYS+IIGSLM + S TRPDI++AVSKLSR+TSNPG DHW+   RV+ YLK 
Sbjct: 1024 NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRAFERVMRYLKG 1083

Query: 481  TKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLGGGAVSWKSSKQTCIARSTM 522
            T   G++YT YPAVLEGYSD NWIS   + K+TSGY+FTLGGGAVSW+S KQT + RSTM
Sbjct: 1084 TMELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTM 1143

[Close]

BLAST of CSPI02G16360 vs. TrEMBL
Match: Q5WMW8_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica GN=OJ1037_G10.4 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 1.7e-143
Identity = 277/561 (49.38%), Postives = 365/561 (65.06%), Query Frame = 1


Query: 1    MMNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLA 60
            M+NAML ++GL +  WGEA+LT+ ++LN+IP K  +   +E+W+ +KL+  +L+ WGCLA
Sbjct: 732  MVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWEWKKLNLSYLRTWGCLA 791

Query: 61   KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 120
            KV +P  K  K+GPKT+DC+F+GYA +S  YRF++  S + D+H  TI  SR+ATFFEN 
Sbjct: 792  KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIANSGVPDMHAGTIFESRDATFFENE 851

Query: 121  FPHKMFC-----EARLQKRSFDAIT-SEYHNRSNVELTNNEELRQSKRMRISKSFGPDYL 180
            FP K        E  +    F  I  ++     N E  N  + R+SKR R++KSFG DY+
Sbjct: 852  FPMKYTPSTSSKETVMPHEHFAPIEHNDQMPEENPEEDNIVDTRKSKRQRVAKSFGDDYI 911

Query: 181  TYLLENEPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKW 240
             YL+++ P+T +EA SSP+A YWKEAV SE++SIM N TWE V  P   KP GCKW+FK 
Sbjct: 912  VYLVDDTPRTVEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKK 971

Query: 241  KLKTDGSIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDV 300
            KL+ DG+I+KYKARLVAK Y Q+EG D+F TYSPV R+T+IR+L+A +A HG  +HQMDV
Sbjct: 972  KLRPDGTIEKYKARLVAKSYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV 1031

Query: 301  KTTFLNGELDEEIY--------------------------MQQP-------ESAMMANGF 360
            KT FLNGEL+EEIY                           Q P       ++ + + GF
Sbjct: 1032 KTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGF 1091

Query: 361  KINECDKCVYVKNNEHDHVIVSKNSRTPQGLVLSQS-HYIDKILKKYTKHEIVIAKTPID 420
             +NE DKCVY +    + VI+         L+   S + I+++L ++   +   A TP D
Sbjct: 1092 VVNEADKCVYYRYGGGEGVILCLY--VDDILIFGTSLNVIEEVLSRFGYSDCKPAPTPYD 1151

Query: 421  GSLHLSKNNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTSNPGRDHWKVILR 480
             S+ L KN   +  QL YS+IIGSLM + S TRPDI++AVSKLSR+ SNPG DHW+ + R
Sbjct: 1152 PSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALER 1211

Query: 481  VLGYLKHTKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLGGGAVSWKSSKQT 522
            V+ YLK T +YGI+YT YP VLEGYSD NWIS   + K+TSGY FTLGGGAVSWKS KQT
Sbjct: 1212 VMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAVSWKSCKQT 1271

[Close]

BLAST of CSPI02G16360 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-36
Identity = 90/257 (35.02%), Postives = 135/257 (52.53%), Query Frame = 1


Query: 138 AITSEYHNRSNVELTNNEELRQSKRMRISKSFGPDYLTYLLENEPQTFKEAMSSPEASYW 197
           A   +Y+  S   LT ++  +     ++S  +    +      EP T+ EA    E   W
Sbjct: 42  AYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAK---EFLVW 101

Query: 198 KEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKWKLKTDGSIDKYKARLVAKGYKQQ 257
             A++ EI ++   HTWE   LP   KP GCKW++K K  +DG+I++YKARLVAKGY QQ
Sbjct: 102 CGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQ 161

Query: 258 EGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDVKTTFLNGELDEEIYMQQPESAMM 317
           EG+D+  T+SPV ++TS+++++A SA++ F +HQ+D+   FLNG+LDEEIYM+ P     
Sbjct: 162 EGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAA 221

Query: 318 ANGFKINECDKCVYVKNNEHDHVIVS-----KNSRTPQGLVLSQSHYIDKILKKYTKHEI 377
             G  +     C Y+K + +     S     K S T  G    QSH       K T    
Sbjct: 222 RQGDSLPPNAVC-YLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 281

Query: 378 VIAKTPIDGSLHLSKNN 390
           +     +D  +  S N+
Sbjct: 282 LCVLVYVDDIIICSNND 294

[Close]

BLAST of CSPI02G16360 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-18
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1


Query: 174 LTYLLENEPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFK 233
           +T  ++ EP++   A+  P    W +A+  E++++  N TW  V  P+     GCKW+FK
Sbjct: 20  ITTTIKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFK 79

Query: 234 WKLKTDGSIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLI 280
            KL +DG++D+ KARLVAKG+ Q+EG+ +  TYSPV R  +IR ++
Sbjct: 80  TKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122

[Close]

BLAST of CSPI02G16360 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-15
Identity = 49/167 (29.34%), Postives = 88/167 (52.69%), Query Frame = 1


Query: 349 PQGLVLSQSHYIDKILKKYTKHEIVIAKTPIDGSLHLSKNNGDSIAQLEYSRIIGSLMCI 408
           P GL LSQ+ Y ++IL      +     TP+   L+ S +        ++  I+G+L   
Sbjct: 51  PSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQ-Y 110

Query: 409 MSCTRPDIAYAVSKLSRYTSNPGRDHWKVILRVLGYLKHTKNYGINYTRYPAV-LEGYSD 468
           ++ TRPDI+YAV+ + +    P    + ++ RVL Y+K T  +G+   +   + ++ + D
Sbjct: 111 LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCD 170

Query: 469 VNWISSTKDSKSTSGYIFTLGGGAVSWKSSKQTCIARSTMEFEFIAL 515
            +W   T   +ST+G+   LG   +SW + +Q  ++RS+ E E+ AL
Sbjct: 171 SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 216

[Close]

BLAST of CSPI02G16360 vs. NCBI nr
Match: gi|77552972|gb|ABA95768.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 543.9 bits (1400), Expect = 3.1e-151
Identity = 284/563 (50.44%), Postives = 372/563 (66.07%), Query Frame = 1


Query: 1    MMNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLA 60
            ++NAML ++GLP+  WGEALLTSN++LNR+P++      YE W GRK S  +L+ WGCLA
Sbjct: 475  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 534

Query: 61   KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 120
            KV +P  K  K+GPKT+DC+F+GYA +S AYRF++ KS++ D+HV TIM SR+ATFFE+ 
Sbjct: 535  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 594

Query: 121  FPHKMFCEARLQKRSF--DAITSEYHNRSNVELTNNEEL----RQSKRMRISKSFGPDYL 180
            FP K       Q       +IT         EL + E++    R+SKR R +KSFG D+ 
Sbjct: 595  FPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 654

Query: 181  TYLLENEPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKW 240
             YL+++ P++  EA +SP+A YWKEAV SE++SI+ N TWE    P   KP GCKW+FK 
Sbjct: 655  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 714

Query: 241  KLKTDGSIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDV 300
            KL+ +G+I+KYKARLVAKGY Q+EG D+F TYSPV R+T+IR+L++ +A HG  +HQMDV
Sbjct: 715  KLRPNGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDV 774

Query: 301  KTTFLNGELDEEIYMQQPE---------------------------------SAMMANGF 360
            KT FLNGELDEEIYM QP+                                   + + GF
Sbjct: 775  KTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGF 834

Query: 361  KINECDKCVYVKNNEHDHVIVSKNSRTPQGLVLS---QSHYIDKILKKYTKHEIVIAKTP 420
             +NE DKCVY ++   + VI+         L+     +SHY++KIL ++   +   + TP
Sbjct: 835  AVNEADKCVYYRHGGGEGVILCLY--VDDILIFGTNLESHYVEKILNRFGYIDSKPSPTP 894

Query: 421  IDGSLHLSKNNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTSNPGRDHWKVI 480
             D SL L KN   +  QLEYS+IIGSLM + S TRPDI++AVSKLSR+TSNPG DHW+ +
Sbjct: 895  YDPSLLLRKNKRIARNQLEYSQIIGSLMYLTSATRPDISFAVSKLSRFTSNPGDDHWRAL 954

Query: 481  LRVLGYLKHTKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLGGGAVSWKSSK 522
             RV+ YLK T   G++YT YPAVLEGYSD NWIS   + K+TSGY+FTLGGGAVSW+S K
Sbjct: 955  ERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCK 1014

[Close]

BLAST of CSPI02G16360 vs. NCBI nr
Match: gi|1012324613|gb|KYP36589.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 542.0 bits (1395), Expect = 1.2e-150
Identity = 281/561 (50.09%), Postives = 374/561 (66.67%), Query Frame = 1


Query: 2   MNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLAK 61
           MNA+L SS  P NLWGEALLT+ +L NRIPH+++    YE WKG   + K+L+VWGCLAK
Sbjct: 1   MNALLNSSYAPDNLWGEALLTACFLQNRIPHRRTGKTPYELWKGYVPNLKYLRVWGCLAK 60

Query: 62  VVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENIF 121
           V++P PK  KIGPKT DC+FIGYA  S AYRF+V KS + D   NTI+ ++NA FFENIF
Sbjct: 61  VLLPDPKKRKIGPKTSDCMFIGYAERSAAYRFLVLKSSVIDC--NTIVETKNAEFFENIF 120

Query: 122 PHKMFCEARLQKRSFDAITSEYHNRSNVELTNNEELRQSKRMRISKSFGPDYLTYLLENE 181
           P K        + S    +SE+           E+LR+SKR R   SFG D+ TYL+EN+
Sbjct: 121 PLKSSINTSSTQPSPLETSSEHMF---------EDLRRSKRQRKETSFGSDFYTYLVEND 180

Query: 182 PQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKWKLKTDGS 241
           P +F EA+SS +A +WKEA+  EI+SI  N+TW  V+LP  +KP GCKWIFK K   DGS
Sbjct: 181 PISFSEAISSSDAIFWKEAIRIEIDSINENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGS 240

Query: 242 IDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDVKTTFLNG 301
           I+KYKARLVAKG+ Q++ +D+F T++PV RI+SIR+LIA +++H   IHQMDVKT FLNG
Sbjct: 241 IEKYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLNG 300

Query: 302 ELDEEIYMQQPE---------------------------------SAMMANGFKINECDK 361
           EL+EEIYM QPE                                   ++ +GF  +  DK
Sbjct: 301 ELEEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSADK 360

Query: 362 CVYVKNNEHDHVIVSKN--------SRTPQGLVLSQSHYIDKILKKYTKHEIVIAKTPID 421
           CVY K+   D VI+            R    ++LSQ HY++++LKK+  ++     TP D
Sbjct: 361 CVYTKSMNDDCVIICLYVDDMLIFVVRKGDSILLSQRHYVERLLKKFDYYDCKYVTTPYD 420

Query: 422 GSLHLSKNNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTSNPGRDHWKVILR 481
            +  L +N GDS+AQ +Y++IIGSL+ +M+ +RPDIAYAVS+LSRYT  P +DHW+ + R
Sbjct: 421 VNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIAYAVSRLSRYTHCPNQDHWEALAR 480

Query: 482 VLGYLKHTKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLGGGAVSWKSSKQT 522
           ++ YL+ T +YGI Y+ +PAVLEGYSD NWIS + ++KSTS Y+FTLGGGA+SW+S +Q+
Sbjct: 481 LMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSYYVFTLGGGAISWRSVRQS 540

[Close]

BLAST of CSPI02G16360 vs. NCBI nr
Match: gi|108862657|gb|ABA98136.2| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 534.6 bits (1376), Expect = 1.9e-148
Identity = 283/554 (51.08%), Postives = 365/554 (65.88%), Query Frame = 1


Query: 1    MMNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLA 60
            ++NAML ++GLP+  WGEALLTSN++LNR+P++      YE W GRK S  +L+ WGCLA
Sbjct: 604  LVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLA 663

Query: 61   KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 120
            KV +P  K  K+GPKT+DC+F+GYA +S AYRF++ KS++ D+HV TIM SR+ATFFE+ 
Sbjct: 664  KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESF 723

Query: 121  FPHKMFCEARLQKRSF--DAITSEYHNRSNVELTNNEEL----RQSKRMRISKSFGPDYL 180
            FP K       Q       +IT         EL + E++    R+SKR R +KSFG D+ 
Sbjct: 724  FPMKDTHSGSNQPFEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 181  TYLLENEPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKW 240
             YL+++ P++  EA +SP+A YWKE V+SE++SI+ N TWE    P   KP GCKW+FK 
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEVVHSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 241  KLKTDGSIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDV 300
            KL+ DG+I+KYKARLVAKGY Q+EG D F TYSPV R+T+IR+L++ +A HG  +HQMDV
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDLFDTYSPVARLTTIRVLLSLAASHGLLVHQMDV 903

Query: 301  KTTFLNGELDEEIYMQQPESAMMANGFKINECDKCVYVKNNEHDHVIV------------ 360
            KT FLNGELDEEIYM QP+   +  GF +NE DKCVY ++   + VI+            
Sbjct: 904  KTAFLNGELDEEIYMYQPDG-FVVEGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGT 963

Query: 361  ------SKNSRTPQGLVLSQSHYIDKILK-KYTKHEIVI--------AKTPIDGSLHLSK 420
                     S   Q   +      D IL  K  + ++          + TP D SL L K
Sbjct: 964  NLEVINEVKSFLSQNFDMKDLGVADVILNIKLIREDLESFGYIDSKPSPTPYDPSLLLRK 1023

Query: 421  NNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTSNPGRDHWKVILRVLGYLKH 480
            N   +  QLEYS+IIGSLM + S TRPDI++AVSKLSR+TSNPG DHW+   RV+ YLK 
Sbjct: 1024 NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRAFERVMRYLKG 1083

Query: 481  TKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLGGGAVSWKSSKQTCIARSTM 522
            T   G++YT YPAVLEGYSD NWIS   + K+TSGY+FTLGGGAVSW+S KQT + RSTM
Sbjct: 1084 TMELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTM 1143

[Close]

BLAST of CSPI02G16360 vs. NCBI nr
Match: gi|1012353102|gb|KYP64290.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 534.6 bits (1376), Expect = 1.9e-148
Identity = 278/573 (48.52%), Postives = 374/573 (65.27%), Query Frame = 1


Query: 1    MMNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLA 60
            MMNA+L SS  P NLWGEALLT+ +L NRIPH+++    YE WKG   + K+L+VWGCLA
Sbjct: 546  MMNALLNSSSAPDNLWGEALLTACFLQNRIPHRRTGKTPYELWKGYVPNLKYLRVWGCLA 605

Query: 61   KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 120
            KV++P PK  KIGPKT DC+FIGYA  S AYRF+V KS + D   NTI+ ++NA FFENI
Sbjct: 606  KVLLPDPKKRKIGPKTSDCMFIGYAERSAAYRFLVLKSSVIDC--NTIVETKNAEFFENI 665

Query: 121  FPHKMFCEARLQKRSFDAITSEYHNRSNVELTNNEELRQSKRMRISKSFGPDYLTYLLEN 180
            FP K        + S    +SE+           E+LR+SKR R   SFG D+ TYL+EN
Sbjct: 666  FPLKSSINTSSTQPSPLETSSEHMF---------EDLRRSKRQRKETSFGSDFYTYLVEN 725

Query: 181  EPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKWKLKTDG 240
            +P +F EA+SS +A +WKEA+  EI+SI  N+TW  V+LP  +KP GCKWIFK K   DG
Sbjct: 726  DPISFSEAISSSDAIFWKEAIRIEIDSIKENNTWTLVDLPKGAKPIGCKWIFKRKYNPDG 785

Query: 241  SIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDVKTTFLN 300
            SI+KYKARLVAKG+ Q++ +D+F T++PV RI+SIR+LIA +++H   IHQMDVKT FLN
Sbjct: 786  SIEKYKARLVAKGFTQKQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLN 845

Query: 301  GELDEEIYMQQPES---------------------------------AMMANGFKINECD 360
            GEL+EEIYM QPE                                   ++ +GF  +  D
Sbjct: 846  GELEEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSAD 905

Query: 361  KCVYVKNNEHDHVIV-------------------SKNSRTPQGLVLSQSHYIDKILKKYT 420
            +CVY K  + D VI+                   +K+       +    HY++++LKK+ 
Sbjct: 906  RCVYTKCMDDDCVIICLYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGHYVERLLKKFD 965

Query: 421  KHEIVIAKTPIDGSLHLSKNNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTS 480
             ++     TP D +  L +N GDS+AQ +Y++IIGSL+ +M+ +RPDIAYAVS+LSRYT 
Sbjct: 966  YYDCKSVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIAYAVSRLSRYTH 1025

Query: 481  NPGRDHWKVILRVLGYLKHTKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLG 522
             P +DHW+ + R++ YL+ T +YGI Y+ +PAVLEGYSD NWIS + ++KSTSGY+FTLG
Sbjct: 1026 CPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSGYVFTLG 1085

[Close]

BLAST of CSPI02G16360 vs. NCBI nr
Match: gi|54291731|gb|AAV32100.1| (putative polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 517.7 bits (1332), Expect = 2.4e-143
Identity = 277/561 (49.38%), Postives = 365/561 (65.06%), Query Frame = 1


Query: 1    MMNAMLISSGLPQNLWGEALLTSNYLLNRIPHKKSQNISYEKWKGRKLSYKFLKVWGCLA 60
            M+NAML ++GL +  WGEA+LT+ ++LN+IP K  +   +E+W+ +KL+  +L+ WGCLA
Sbjct: 732  MVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWEWKKLNLSYLRTWGCLA 791

Query: 61   KVVMPKPKMVKIGPKTIDCIFIGYASNSCAYRFIVHKSDISDIHVNTIMVSRNATFFENI 120
            KV +P  K  K+GPKT+DC+F+GYA +S  YRF++  S + D+H  TI  SR+ATFFEN 
Sbjct: 792  KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIANSGVPDMHAGTIFESRDATFFENE 851

Query: 121  FPHKMFC-----EARLQKRSFDAIT-SEYHNRSNVELTNNEELRQSKRMRISKSFGPDYL 180
            FP K        E  +    F  I  ++     N E  N  + R+SKR R++KSFG DY+
Sbjct: 852  FPMKYTPSTSSKETVMPHEHFAPIEHNDQMPEENPEEDNIVDTRKSKRQRVAKSFGDDYI 911

Query: 181  TYLLENEPQTFKEAMSSPEASYWKEAVNSEIESIMHNHTWEPVNLPLVSKPPGCKWIFKW 240
             YL+++ P+T +EA SSP+A YWKEAV SE++SIM N TWE V  P   KP GCKW+FK 
Sbjct: 912  VYLVDDTPRTVEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKK 971

Query: 241  KLKTDGSIDKYKARLVAKGYKQQEGLDYFVTYSPVTRITSIRMLIATSALHGFEIHQMDV 300
            KL+ DG+I+KYKARLVAK Y Q+EG D+F TYSPV R+T+IR+L+A +A HG  +HQMDV
Sbjct: 972  KLRPDGTIEKYKARLVAKSYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDV 1031

Query: 301  KTTFLNGELDEEIY--------------------------MQQP-------ESAMMANGF 360
            KT FLNGEL+EEIY                           Q P       ++ + + GF
Sbjct: 1032 KTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGF 1091

Query: 361  KINECDKCVYVKNNEHDHVIVSKNSRTPQGLVLSQS-HYIDKILKKYTKHEIVIAKTPID 420
             +NE DKCVY +    + VI+         L+   S + I+++L ++   +   A TP D
Sbjct: 1092 VVNEADKCVYYRYGGGEGVILCLY--VDDILIFGTSLNVIEEVLSRFGYSDCKPAPTPYD 1151

Query: 421  GSLHLSKNNGDSIAQLEYSRIIGSLMCIMSCTRPDIAYAVSKLSRYTSNPGRDHWKVILR 480
             S+ L KN   +  QL YS+IIGSLM + S TRPDI++AVSKLSR+ SNPG DHW+ + R
Sbjct: 1152 PSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALER 1211

Query: 481  VLGYLKHTKNYGINYTRYPAVLEGYSDVNWISSTKDSKSTSGYIFTLGGGAVSWKSSKQT 522
            V+ YLK T +YGI+YT YP VLEGYSD NWIS   + K+TSGY FTLGGGAVSWKS KQT
Sbjct: 1212 VMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAVSWKSCKQT 1271

The following BLAST results are available for this feature:

BLAST of CSPI02G16360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	8.1e-35	30.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	4.9e-24	33.16	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M820_ARATH	4.5e-17	40.57	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0...	[more]
M810_ARATH	2.1e-14	29.34	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CSPI02G16360 vs. TrEMBL


Match Name	E-value	Identity	Description
Q2QY02_ORYSJ	2.2e-151	50.44	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
A0A151R256_CAJCA	8.2e-151	50.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TB57_CAJCA	1.3e-148	48.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
Q2QRF6_ORYSJ	1.3e-148	51.08	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
Q5WMW8_ORYSJ	1.7e-143	49.38	Putative polyprotein OS=Oryza sativa subsp. japonica GN=OJ1037_G10.4 PE=4 SV=1	[more]

BLAST of CSPI02G16360 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	6.0e-36	35.02	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.5e-18	40.57	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	1.2e-15	29.34	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CSPI02G16360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|77552972\|gb\|ABA95768.1\|	3.1e-151	50.44	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|1012324613\|gb\|KYP36589.1\|	1.2e-150	50.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|108862657\|gb\|ABA98136.2\|	1.9e-148	51.08	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|1012353102\|gb\|KYP64290.1\|	1.9e-148	48.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|54291731\|gb\|AAV32100.1\|	2.4e-143	49.38	putative polyprotein [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
cellular_component	GO:0031410	cytoplasmic vesicle
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G16360.1	CSPI02G16360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 211..315 score: 1.8
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..521 score: 2.5E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 1..521 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G16360	Cucumber (Gy14) v1	cgycpiB339
CSPI02G16360	Cucurbita moschata (Rifu)	cmocpiB540
CSPI02G16360	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G16360	Melon (DHL92) v3.5.1	cpimeB101
CSPI02G16360	Watermelon (Charleston Gray)	cpiwcgB133
CSPI02G16360	Watermelon (97103) v1	cpiwmB146
CSPI02G16360	Cucurbita pepo (Zucchini)	cpecpiB273
CSPI02G16360	Cucurbita pepo (Zucchini)	cpecpiB711
CSPI02G16360	Bottle gourd (USVL1VR-Ls)	cpilsiB093
CSPI02G16360	Melon (DHL92) v3.6.1	cpimedB093
CSPI02G16360	Cucumber (Gy14) v2	cgybcpiB058
CSPI02G16360	Silver-seed gourd	carcpiB0754
CSPI02G16360	Cucumber (Chinese Long) v3	cpicucB082
CSPI02G16360	Watermelon (97103) v2	cpiwmbB125
CSPI02G16360	Wax gourd	cpiwgoB173