CSPI02G16010 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G16010
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionP-loop containing nucleoside triphosphate hydrolases superfamily protein
LocationChr2 : 15496392 .. 15498020 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTGTTTTGTGAGTTTGAGTTCTTCATGAAGTTGCTGTTATTAGATGTCTCTGACTTCTCTTTAAAGGTAATTTAACTACACATTTAAGTTCATCTTTTTGGTTTTATTTTGTGGCTTACATCAGCAATGTTAAATTTTCTACAGATGCAGAGCAAATATGGTTGTCCCAAGAAAGAATCTGTAAGTTCCAATTGCCATCAGTGAGGATTAAAATATTTTTACTTTCCTAAAGTATAGGTAATTGTCATGTTTTTAGAATGAAAGTTCTGAAAACTTCAACTAGGTTAGTAGGTATTTAGCCACAATCTGACGCGAGTGCTTAAACATGGAGATGTTGCTTGAGGAGGCCTAGTAAAAGAGTTATTCCTAATATGTTGGATTTCTTTTGTAGTCATTCAGGAGGTCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGTTTGGGGTTCCTTTTCCATTCTTCCTACAAGTGGAAATACTGGGGGTAAGAAAAACATATGTTTTCCTTTTCCAAGATAAATGTTCCTCCTACACTTGACAAGTTTATTCTGTCTTATCTAAATATACGAGTTCTGTGTTTTTATTTCTTATCAACAAAATGAAATTAATGGTTGATTTTAAGGTTATTCTGATTGATTTGTAATATCAATAAAGATGAACAACAAAATATTCCTTTATAATTGTTCTTTCGAAGTTCAACAAAAAGATTCATAGTTATTAATCAACAAAAAGAGGTATGCACCAAATTCCGAGTTAGGATTTTTATCCCAACCAATCTCCCACTCAACAAGAAGAGAGAAAATAATAGAGCCCCCATGAATGGGCCTCTATTAATATATTTTAATAAAATTTTGGTTTTGGAGCAGTTTATCCCATGGATTGAGTATATTCCAGGAAGACAATAGTGAAGGAAAAGACACTCTAAAGCTTGAGACAAATGCAGAATCATCGAAGGTTTGATTTAGCTTTAAAAAATTTGCTTCAAAAGCATGTGTCATTGTACATCTTTATTAATGTGATTCTAAAAAATGCAACTTTTGCAGGAAGCCCAAAGGGACGAAGCTGTTGGGGCAAAGACTGAAAATAAATCTAAAATCCAGCTACAGAGGCAGAGAAATCTGTTCCCATAGTGAAAAAATATGTTGAAAATGTGCCTCCACAAAAAGCACCTGTAAGTTCGTCTTTAGTGAAGGTGGAACTTGGAACATGTTTGATTCGATTTCTGACCTTTGAATACCTTAAATTATTGAGTCAATCGATGATTTACCAAGTATCATGTCAAACCTTCGCAATGTTATTATTTCTACTTGTTAAGTTTTCTACATATTCTAAATCACAGGTCCCTAGACCGTGCCTCAAAATGATAACCAATTTTACGAGCTTTTGGTACTCGAATTACATTGGATAAGAATCATGTGTATTTTATGAACATCATGTCCTTGTTGGTTTCTAATGTTTGGAAATGAGGTTTCAACTTTGTTACTTCTGAGTATTCTTTCACTTAATTCTCAGTTTATATGGTCACTGTTGACAGACACTTTCCCTCCTATATCTCATTCTTTCATCCTTTTAATATTTCCTTTAGTTTGACAAGAAATTCCTCCCGACAATGAATTTGAAAC

mRNA sequence

ATGGGATTGTTTTGTGAGTTTGAGTTCTTCATGAAGTTGCTGTTATTAGATGTCTCTGACTTCTCTTTAAAGATGCAGAGCAAATATGGTTGTCCCAAGAAAGAATCTTCATTCAGGAGGTCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGAAGACAATAGTGAAGGAAAAGACACTCTAAAGCTTGAGACAAATGCAGAATCATCGAAGGAAGCCCAAAGGGACGAAGCTGTTGGGGCAAAGACTGAAAATAAATCTAAAATCCAGCTACAGAGGCAGAGAAATCTGTTCCCATAG

Coding sequence (CDS)

ATGGGATTGTTTTGTGAGTTTGAGTTCTTCATGAAGTTGCTGTTATTAGATGTCTCTGACTTCTCTTTAAAGATGCAGAGCAAATATGGTTGTCCCAAGAAAGAATCTTCATTCAGGAGGTCGATCTCTGAGGTGACATTGGAGCGAATGTCTAGCGAAGACAATAGTGAAGGAAAAGACACTCTAAAGCTTGAGACAAATGCAGAATCATCGAAGGAAGCCCAAAGGGACGAAGCTGTTGGGGCAAAGACTGAAAATAAATCTAAAATCCAGCTACAGAGGCAGAGAAATCTGTTCCCATAG
Homology
[Close]
BLAST of CSPI02G16010 vs. TrEMBL
Match: A0A0A0LJV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G317420 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 

Query: 11 MKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
          MKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS
Sbjct: 1  MKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 42

[Close]
BLAST of CSPI02G16010 vs. TrEMBL
Match: A0A0A0KJL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139870 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-12
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
           F  KLLLLDVSDFSLKMQSKYGCPKK+SSFRRSISEVTLERMSS
Sbjct: 128 FESKLLLLDVSDFSLKMQSKYGCPKKDSSFRRSISEVTLERMSS 171

[Close]
BLAST of CSPI02G16010 vs. TrEMBL
Match: E5GBD7_CUCME (ATP binding protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 11  MKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
           ++L+L DVSDFSLKMQSKYGCPKKES FRRSISEVTLERMSS
Sbjct: 101 LRLILCDVSDFSLKMQSKYGCPKKESLFRRSISEVTLERMSS 142

[Close]
BLAST of CSPI02G16010 vs. TrEMBL
Match: A0A067JRS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26030 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
           F  KLLLLDV+DFS+KMQSKYGC KKESSF+RSISE T+ERMSS
Sbjct: 128 FESKLLLLDVNDFSIKMQSKYGCIKKESSFKRSISEATIERMSS 171

[Close]
BLAST of CSPI02G16010 vs. TrEMBL
Match: B9RIQ4_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1581520 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
           F  KLLLLDV+DFS+K+QSKYGC KKESSF+RSISEVT ERMSS
Sbjct: 128 FESKLLLLDVADFSIKIQSKYGCTKKESSFKRSISEVTFERMSS 171

[Close]
BLAST of CSPI02G16010 vs. TAIR10
Match: AT4G28000.1 (AT4G28000.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-10
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
           F  KLLLLD++DFS+K+QSKYGC KKE S +RSISE+T+++MS+
Sbjct: 127 FESKLLLLDITDFSIKIQSKYGCVKKEPSHKRSISELTMDKMSN 170

[Close]
BLAST of CSPI02G16010 vs. TAIR10
Match: AT5G52882.1 (AT5G52882.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMS---------SEDNSEGK 68
           F  KLLLLD++DFS+K+QSKYGC K+E   +RSISE+TL+++S         S+   E +
Sbjct: 127 FESKLLLLDITDFSIKIQSKYGCTKREPFHKRSISELTLDKVSSLMGSFSMLSQREVEPR 186

Query: 69  DTLKLETNAESSKEAQRDEA 80
            TL+  T+    K    + +
Sbjct: 187 GTLRRHTSGNDLKSRSTESS 206

[Close]
BLAST of CSPI02G16010 vs. TAIR10
Match: AT1G64110.2 (AT1G64110.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKE-SSFRRSISEVTLERMS 52
           F  KLLLLDV+DF+LK+QSKYG    E SSF+RS SE  LE++S
Sbjct: 129 FDAKLLLLDVNDFALKIQSKYGSGNTESSSFKRSPSESALEQLS 172

[Close]
BLAST of CSPI02G16010 vs. NCBI nr
Match: gi|778674243|ref|XP_011650169.1| (PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-27
Identity = 82/126 (65.08%), Postives = 85/126 (67.46%), Query Frame = 1 

Query: 1   MGLFCEFEFFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS-------- 60
           MGLFCEFEFFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS        
Sbjct: 1   MGLFCEFEFFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSSVWGSFSIL 60

Query: 61  --EDNSEGKD---------------------------TLKLETNAESSKEAQRDEAVGAK 90
               N+ GK                            TLKLETNAESSKEAQRDEAVGAK
Sbjct: 61  PTSGNTRGKKNILKFWFWSSLSHGLGIFQEGNSEGKDTLKLETNAESSKEAQRDEAVGAK 120

[Close]
BLAST of CSPI02G16010 vs. NCBI nr
Match: gi|700207066|gb|KGN62185.1| (hypothetical protein Csa_2G317420 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 

Query: 11 MKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
          MKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS
Sbjct: 1  MKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 42

[Close]
BLAST of CSPI02G16010 vs. NCBI nr
Match: gi|778699019|ref|XP_011654642.1| (PREDICTED: uncharacterized protein LOC101216426 isoform X2 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 9.3e-12
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
           F  KLLLLDVSDFSLKMQSKYGCPKK+SSFRRSISEVTLERMSS
Sbjct: 128 FESKLLLLDVSDFSLKMQSKYGCPKKDSSFRRSISEVTLERMSS 171

[Close]
BLAST of CSPI02G16010 vs. NCBI nr
Match: gi|778699015|ref|XP_004145904.2| (PREDICTED: nuclear valosin-containing protein-like isoform X1 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 9.3e-12
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
           F  KLLLLDVSDFSLKMQSKYGCPKK+SSFRRSISEVTLERMSS
Sbjct: 128 FESKLLLLDVSDFSLKMQSKYGCPKKDSSFRRSISEVTLERMSS 171

[Close]
BLAST of CSPI02G16010 vs. NCBI nr
Match: gi|659074334|ref|XP_008437548.1| (PREDICTED: uncharacterized protein LOC103482929 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 9   FFMKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTLERMSS 53
           F  KLLLLDVSDFSLKMQSKYGCPKKES FRRSISEVTLERMSS
Sbjct: 128 FESKLLLLDVSDFSLKMQSKYGCPKKESLFRRSISEVTLERMSS 171

The following BLAST results are available for this feature:
BLAST of CSPI02G16010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G16010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJV7_CUCSA7.6e-13100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G317420 PE=3 SV=1[more]
A0A0A0KJL1_CUCSA6.5e-1293.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139870 PE=4 SV=1[more]
E5GBD7_CUCME1.2e-1088.10ATP binding protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A067JRS0_JATCU1.8e-0981.82Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26030 PE=4 SV=1[more]
B9RIQ4_RICCO1.8e-0981.82ATP binding protein, putative OS=Ricinus communis GN=RCOM_1581520 PE=4 SV=1[more]
BLAST of CSPI02G16010 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28000.15.4e-1065.91 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT5G52882.11.9e-0741.25 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
AT1G64110.26.2e-0663.64 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
BLAST of CSPI02G16010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674243|ref|XP_011650169.1|7.8e-2765.08PREDICTED: LOW QUALITY PROTEIN: ATPase family AAA domain-containing protein 1-A-... [more]
gi|700207066|gb|KGN62185.1|1.1e-12100.00hypothetical protein Csa_2G317420 [Cucumis sativus][more]
gi|778699019|ref|XP_011654642.1|9.3e-1293.18PREDICTED: uncharacterized protein LOC101216426 isoform X2 [Cucumis sativus][more]
gi|778699015|ref|XP_004145904.2|9.3e-1293.18PREDICTED: nuclear valosin-containing protein-like isoform X1 [Cucumis sativus][more]
gi|659074334|ref|XP_008437548.1|2.1e-1193.18PREDICTED: uncharacterized protein LOC103482929 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008568 microtubule-severing ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G16010.1CSPI02G16010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23074AAA ATPASEcoord: 9..96
score: 2.2
NoneNo IPR availablePANTHERPTHR23074:SF98SUBFAMILY NOT NAMEDcoord: 9..96
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G16010Cucsa.381290Cucumber (Gy14) v1cgycpiB563
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G16010Cucumber (Chinese Long) v3cpicucB069
CSPI02G16010Cucurbita maxima (Rimu)cmacpiB704
CSPI02G16010Cucurbita moschata (Rifu)cmocpiB697
CSPI02G16010Cucumber (Chinese Long) v2cpicuB065
CSPI02G16010Cucurbita pepo (Zucchini)cpecpiB387
CSPI02G16010Cucumber (Gy14) v2cgybcpiB059
CSPI02G16010Silver-seed gourdcarcpiB0718