CSPI02G15990 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G15990
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 15469743 .. 15470195 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAACTTTCCTAGCAAAGCGCATGAGGAAGACTATTTCCTTAATTTAGACGTGTTAGATAACGTGAGTGGTTCGTCTTCAGTGGGCGACACTTTAGGTTCGTAATAACAAGCATTTTTCAATACAATTCCTCTCAACTGTCTTTAGTTATGCTTATTGTTCTAATAACGAGCATTTTTAGTAGACCCCTCTCAACCGGCTCCCACTTCTACTACGAGGAGAGTACGACAACATTCTCAAAATATAGATGTCGAGCAGTACATACAGCGAAAATGGGAGAATCCCATTTCAATCTCCTCTGAAGAGGACAGACCTGTCTCGACACACGCCCCTCGTTTTAGTTGCACAATCGGTGTGTTGACACTGTTTCCTATTCAAGCCCTAAAGTGGAAAGATGTAGCACAAGAGTGCAATGAGGTCATCAAGGGCGGCCTAGCGATAACTCTGTAA

mRNA sequence

ATGTCTAACTTTCCTAGCAAAGCGCATGAGGAAGACTATTTCCTTAATTTAGACGTGTTAGATAACGTGAGTGGTTCGTCTTCAGTGGGCGACACTTTAGACCCCTCTCAACCGGCTCCCACTTCTACTACGAGGAGAGTACGACAACATTCTCAAAATATAGATGTCGAGCAGTACATACAGCGAAAATGGGAGAATCCCATTTCAATCTCCTCTGAAGAGGACAGACCTGTCTCGACACACGCCCCTCGTTTTAGTTGCACAATCGGTGTGTTGACACTGTTTCCTATTCAAGCCCTAAAGTGGAAAGATGTAGCACAAGAGTGCAATGAGGTCATCAAGGGCGGCCTAGCGATAACTCTGTAA

Coding sequence (CDS)

ATGTCTAACTTTCCTAGCAAAGCGCATGAGGAAGACTATTTCCTTAATTTAGACGTGTTAGATAACGTGAGTGGTTCGTCTTCAGTGGGCGACACTTTAGACCCCTCTCAACCGGCTCCCACTTCTACTACGAGGAGAGTACGACAACATTCTCAAAATATAGATGTCGAGCAGTACATACAGCGAAAATGGGAGAATCCCATTTCAATCTCCTCTGAAGAGGACAGACCTGTCTCGACACACGCCCCTCGTTTTAGTTGCACAATCGGTGTGTTGACACTGTTTCCTATTCAAGCCCTAAAGTGGAAAGATGTAGCACAAGAGTGCAATGAGGTCATCAAGGGCGGCCTAGCGATAACTCTGTAA
Homology
[Close]
BLAST of CSPI02G15990 vs. TrEMBL
Match: E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-10
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1 

Query: 11  EDYFLNL-DVLDNVSG-SSSVGDTLDPSQPAPTSTTRRVRQHSQNIDVEQYIQRKWENPI 70
           +D FL   D LDN++G SSSVGD  + S    T T RR R  S+ +++E+++      P+
Sbjct: 4   DDMFLQFEDDLDNIAGGSSSVGDNTESSSQQATPTPRR-RAQSRLLELERHVAINGCIPM 63

Query: 71  SISSEEDRPVSTHAPRFSCTIGVLT--LFPIQALKWKDVAQECNEVIKGGL 118
           +I+   ++P+S +A  FS  IGV     FP++ LKW DV +E  EV+KG L
Sbjct: 64  TIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDL 113

[Close]
BLAST of CSPI02G15990 vs. NCBI nr
Match: gi|778665376|ref|XP_011648549.1| (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 7.0e-22
Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 1 

Query: 3   NFPSKAHEEDYFLNLDVLDNVSGSSSVGDTLDPSQPAPTSTTRRVRQHSQNIDVEQYIQR 62
           +FPS   E D +LNLD LDN  G S VG+T D SQ   T+T RR RQHS+N+++E+YI +
Sbjct: 687 SFPSGIREGDVYLNLDTLDNAEGLSLVGETSDASQFTLTATLRR-RQHSRNLELERYILQ 746

Query: 63  KWENPISISSEEDRPVSTHAPRFSCTIGVLT--LFPIQALKWKDVAQECNEVIK 115
             +  ISI  E D+P+S H  RFSCTI VLT   FPIQ LKW DV QE  EV+K
Sbjct: 747 NGKILISIPLEGDKPISPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEVVK 799

[Close]
BLAST of CSPI02G15990 vs. NCBI nr
Match: gi|307136235|gb|ADN34071.1| (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 72.0 bits (175), Expect = 8.0e-10
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1 

Query: 11  EDYFLNL-DVLDNVSG-SSSVGDTLDPSQPAPTSTTRRVRQHSQNIDVEQYIQRKWENPI 70
           +D FL   D LDN++G SSSVGD  + S    T T RR R  S+ +++E+++      P+
Sbjct: 4   DDMFLQFEDDLDNIAGGSSSVGDNTESSSQQATPTPRR-RAQSRLLELERHVAINGCIPM 63

Query: 71  SISSEEDRPVSTHAPRFSCTIGVLT--LFPIQALKWKDVAQECNEVIKGGL 118
           +I+   ++P+S +A  FS  IGV     FP++ LKW DV +E  EV+KG L
Sbjct: 64  TIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDL 113

The following BLAST results are available for this feature:
BLAST of CSPI02G15990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G15990 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC72_CUCME5.6e-1040.54CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI02G15990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G15990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665376|ref|XP_011648549.1|7.0e-2255.26PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
gi|307136235|gb|ADN34071.1|8.0e-1040.54CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G15990.1CSPI02G15990.1mRNA