CSPI02G14050 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G14050
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	F-box family protein
Location	Chr2 : 13912716 .. 13915159 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAGTGATTCCATCATGGGGATTTACTAAATTCATGAAAAAACCGAACAAAATGTTCGTTCGTATCGTATAATTTGGATAAATTTTGGAGCTCAGATTCTTGAAATGGTGGCGAAATTATGTCAACATCTTCTCCTTCTCTCTCTTCTTTGAATATTCCGTTTGCTTTTTTATGCTTATCTTTTGCCAAAAGTAACGAATTCAACTCGTGAATTTCCTCGTTTTTCAACGCCGCAAACTTCTTCTTCTTCTTCTTCCAAATTGGTATACGGCTAGAATGGATTCTGCTGTTGTGTGGTCGGTAGAGATGGAGTTGGAACCGGAGATTGATCGATTGCCGATTGACCTATTGGCTCATATTTTTGCTATGATCACCTCCTTCACCGATTTGGCTCAGTAATTCATTTTCAATTTCGGTTTTGTTTAATTTTTTCCCCTTCAGTTGCTATTGTTATTTCCCTCTAATTTTGAGGGTTTATGTGACTGTGGGAAAACGCAGGGCGTGCGGCGTATGTAGGAAATGGAAGGAAGGAGTTAAACTGTCTCTCGGTAGGAGGAAGAGTTTGAGTTTCGCTGGTTGGAAGATGGATGATAACTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGGGAGCTCGACATGTAATCTCTCTCTCTCTCTTGAAATTTCAGTGAAATTTTCGTCAGTTTGCTTTTCTTCGAGTAGTTTCTAATTACAGATAGTTACTGGTGTTGTGTGTTGTGAGATGAAACTAGTTTTTCAAATTCGCTAGGTTAATCGATTCAATTGGCTTTACGATTACGAACCACAAAAACAGAGGTTTATCTTAAGAGATTGTGATGTTGTTTGGGAATAATTTAGGGAGAAAGTTCTTTGAAATTGGTTTGTAAATCTGGTGTTATATTCTTGATGTTTATGGTTCGTGTTCTTCAGCTCAAGAAGCCGTTGGGGTTGCCATATAACAGACCATGGATTGTATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTTTGGGGTATGGCAGGGATCACCGACAAGGGTGTTGTGCAACTGGTATGAATTTGATATTATCTTAGAATGAAATAAACCTTGATTTGTTATTGGAGTATGAGTTTAGGTGGAGTTTTGAACTATTGGATTTCTCTAAATTGTTCATCGTCTAGAATCTCTGTTTGTAGTTTTGGATATTCTAGAGCCCATCCAAGAGTAAACACCAGTTTGAGAAATTCTCTTTGTCCTGAAATTTCATGTTCTTTACAGGACTTTAGGAGGAAGTTTTTGACAACATTTTCTTGTTCTCTCTACTTCAGAAATTTTGGAAATGCATGATTTTTGGAAGTAAGGTTCCACTTGTTCTTAAAAATAAATCTTCATAAGAGAAAAAACAAGAATCTACTTTCAAAACATGGTATTCATAGGTGGAAATTAACTCACCCAAAGTATGTATTCTCAATCAAAATGTCATAGACCCAATTCCCTAAAATCATAAATAAAAGACTTGAATTCGATAAAAGGCCAAAAGAGAACAAGCATAATCCGTGATTTAATATTTTACAAATTTTCTTGCCAATCAAATGTCGTAGGTTTAATCAAACTGTCTTGTATGATTAGTTGAAGTTCTTGGGAGCTAATCCATGCATTTGTAGATATTAAAATAGGGAAAACAAACTCAAATCCCTCCACCCACGTATAAAAAATTTGTATTCCACATGTGCTTTCACTTTACTTTTGTTCTAAAATAGACTTTTTTCTCCACATTTTGGTATCTTACATAGTGATATCACTTCCTTTTCCTAAAACTATATTTGCTTGTGTTCCAAGATTTCCAGAGCCAACTCTTTGCAAAACTTGAACATTGGTGGAACCTTTGTCACAGACGTATCTCTATATGCTATTGCAGATAGCTGCCCAAATTTGAAGGTGATTATTCCAAGCATCTCCTTAACTCCCTGTATAATACCTACATGGTCTTCCACACAATCTTTAATCAAGTCCATTTCTTTCTTAATTCTGTAGACCATTGTCCTTTGGAGCTGTCGCCATGTAACAGAGACCGGACTTCTTATTCTTGTAAGTAAATGCCGTAAACTCGAGTCGATAAATGTTTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCCCTTCAAATAAAATCAAGAAGTCTGCTTAATTCTATGTGGTCTGTTGTGTGAAATATGCTATAAAATATTCTTCATATAACCTGTAAAGCTTCTATTGTATGTATATGTCTTCATCTTTGCGTTCTTCATCATCAAAAGTAAAATATTAGATTTGTTTATCTTTCCCTCAATAAAGCTGATTATGTTACTTTCAGTTGTTCATTCAAAACTAAATTATACTCTCCTAGTGTAAATATAATTGTATGTAAAAACTAAGCTC

mRNA sequence

ATGGATTCTGCTGTTGTGTGGTCGGTAGAGATGGAGTTGGAACCGGAGATTGATCGATTGCCGATTGACCTATTGGCTCATATTTTTGCTATGATCACCTCCTTCACCGATTTGGCTCAGGCGTGCGGCGTATGTAGGAAATGGAAGGAAGGAGTTAAACTGTCTCTCGGTAGGAGGAAGAGTTTGAGTTTCGCTGGTTGGAAGATGGATGATAACTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGGGAGCTCGACATCTCAAGAAGCCGTTGGGGTTGCCATATAACAGACCATGGATTGTATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTTTGGGGTATGGCAGGGATCACCGACAAGGGTGTTGTGCAACTGATTTCCAGAGCCAACTCTTTGCAAAACTTGAACATTGGTGGAACCTTTGTCACAGACGTATCTCTATATGCTATTGCAGATAGCTGCCCAAATTTGAAGACCATTGTCCTTTGGAGCTGTCGCCATGTAACAGAGACCGGACTTCTTATTCTTGTAAGTAAATGCCGTAAACTCGAGTCGATAAATGTTTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCCCTTCAAATAAAATCAAGAAGTCTGCTTAATTCTATGTGGTCTGTTGTGTGA

Coding sequence (CDS)

ATGGATTCTGCTGTTGTGTGGTCGGTAGAGATGGAGTTGGAACCGGAGATTGATCGATTGCCGATTGACCTATTGGCTCATATTTTTGCTATGATCACCTCCTTCACCGATTTGGCTCAGGCGTGCGGCGTATGTAGGAAATGGAAGGAAGGAGTTAAACTGTCTCTCGGTAGGAGGAAGAGTTTGAGTTTCGCTGGTTGGAAGATGGATGATAACTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGGGAGCTCGACATCTCAAGAAGCCGTTGGGGTTGCCATATAACAGACCATGGATTGTATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTTTGGGGTATGGCAGGGATCACCGACAAGGGTGTTGTGCAACTGATTTCCAGAGCCAACTCTTTGCAAAACTTGAACATTGGTGGAACCTTTGTCACAGACGTATCTCTATATGCTATTGCAGATAGCTGCCCAAATTTGAAGACCATTGTCCTTTGGAGCTGTCGCCATGTAACAGAGACCGGACTTCTTATTCTTGTAAGTAAATGCCGTAAACTCGAGTCGATAAATGTTTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCCCTTCAAATAAAATCAAGAAGTCTGCTTAATTCTATGTGGTCTGTTGTGTGA

Homology

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BLAST of CSPI02G14050 vs. Swiss-Prot
Match: FB302_ARATH (F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.6e-86
Identity = 149/215 (69.30%), Postives = 183/215 (85.12%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           M+ E  IDRLP+DLLA+IF++ TSFT LAQA GVC+KW++ V  S+ RR++LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+ST+RL+  A++L+ELDISRSRWGCHITD+GLY+I+ A+C+ NL S+SLWGM  ITD G
Sbjct: 61  DDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           VVQLISR +SLQ+LNIGGTF+TD SL+AIA+ C  LKTI +W CRHVTE GLL+LV+KCR
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL 226
           KLESIN+WG RVPVDCFI L+ ISP+LQIK   LL
Sbjct: 181 KLESINLWGTRVPVDCFIALLTISPALQIKPMELL 215

[Close]

BLAST of CSPI02G14050 vs. Swiss-Prot
Match: SKP2B_ARATH (F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-13
Identity = 62/236 (26.27%), Postives = 106/236 (44.92%), Query Frame = 1


Query: 20  LPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKM---------- 79
           +P++LL  I  ++   T +  +C +C  W++ V L L  R SLS+    M          
Sbjct: 31  IPVELLMKILNLVDDRTVIIASC-ICSGWRDAVSLGL-TRLSLSWCKKNMNSLVLSLAPK 90

Query: 80  ----------------DDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIP 139
                           +DN+   +  H + L++LD+S+S     ITDH LY  SLA+   
Sbjct: 91  FVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSS---KITDHSLY--SLARGCT 150

Query: 140 NLKSISLWGMAGITDK------------------GVVQLIS---------RANSLQNLNI 199
           NL  ++L G    +D                   G V+ +S           N LQ+LN+
Sbjct: 151 NLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL 210

Query: 200 GGTF-VTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGMR 202
           G    ++D  + ++A  CP+L+T+ L SC  +T+  ++ L ++C  L S+ ++  R
Sbjct: 211 GWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCR 259

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BLAST of CSPI02G14050 vs. Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-12
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 98  ITDHGLYEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGG-TFVTDVSL 157
           ++D GL   S+ +  P+L S+SLW ++ ITD G++++      L+ L +   + +TD  L
Sbjct: 164 VSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGL 223

Query: 158 YAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINV 198
            AIA SCPNL  + L +C  + + GLL +   C KL+S+++
Sbjct: 224 VAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262

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BLAST of CSPI02G14050 vs. Swiss-Prot
Match: FBXL7_HUMAN (F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 1


Query: 68  KMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEIS-------------------- 127
           ++ D     L+ +  S++EL +S  R+   ++D GL EI+                    
Sbjct: 310 RLTDEGLRYLVIYCASIKELSVSDCRF---VSDFGLREIAKLESRLRYLSIAHCGRVTDV 369

Query: 128 ----LAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGT-FVTDVSLYAIADS 187
               +AK    L+ ++  G  GITD GV  L      L++L+IG    V+D  L  +A +
Sbjct: 370 GIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALN 429

Query: 188 CPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVD 206
           C NLK + L SC  +T  GL I+ + C  L+++NV    V V+
Sbjct: 430 CFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVE 469

[Close]

BLAST of CSPI02G14050 vs. Swiss-Prot
Match: FBXL7_MOUSE (F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 1


Query: 68  KMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEIS-------------------- 127
           ++ D     L+ +  S++EL +S  R+   ++D GL EI+                    
Sbjct: 310 RLTDEGLRYLVIYCTSIKELSVSDCRF---VSDFGLREIAKLESRLRYLSIAHCGRITDV 369

Query: 128 ----LAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGT-FVTDVSLYAIADS 187
               +AK    L+ ++  G  GITD GV  L      L++L+IG    V+D  L ++A +
Sbjct: 370 GIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALN 429

Query: 188 CPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVD 206
           C NLK + L SC  +T  GL I+ + C  L+ +NV    V V+
Sbjct: 430 CFNLKRLSLKSCESITGQGLQIVAANCFDLQMLNVQDCEVSVE 469

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BLAST of CSPI02G14050 vs. TrEMBL
Match: A0A0A0LPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279180 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 3.5e-130
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


Query: 1   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60
           MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK
Sbjct: 4   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 63

Query: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 120
           SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL
Sbjct: 64  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 123

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET
Sbjct: 124 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 183

Query: 181 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV 233
           GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV
Sbjct: 184 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV 235

[Close]

BLAST of CSPI02G14050 vs. TrEMBL
Match: W9SXB4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001772 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.3e-97
Identity = 174/215 (80.93%), Postives = 196/215 (91.16%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           ME E EIDRLPIDLLAHIFAMITSFTDLAQA  VCRKWK+GVK SLGRR++LSFAGWKMD
Sbjct: 1   MEGEAEIDRLPIDLLAHIFAMITSFTDLAQASSVCRKWKKGVKQSLGRRENLSFAGWKMD 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+STARL+RHAYSL+ELDISRSRWGC I+D+GLY+ISLAKC+ NL SISLWGM GITDKG
Sbjct: 61  DDSTARLVRHAYSLKELDISRSRWGCQISDNGLYQISLAKCVSNLTSISLWGMTGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           V+QLISRA SL++LNIGGTF+TD SLYAIAD CP LK+IVLWSCRHV+E GLL+LV+KCR
Sbjct: 121 VLQLISRAKSLRHLNIGGTFITDESLYAIADGCPQLKSIVLWSCRHVSENGLLVLVNKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL 226
           KL+ INVWG RVPVDCFI L+ I P+LQIK+RSLL
Sbjct: 181 KLKMINVWGTRVPVDCFIVLLTIRPALQIKTRSLL 215

[Close]

BLAST of CSPI02G14050 vs. TrEMBL
Match: A0A0B0NU42_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06272 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.8e-95
Identity = 175/223 (78.48%), Postives = 197/223 (88.34%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           ME E EIDRLPIDLLAHIF MITSFTDLAQA GVCRKWK+GVK +L RR++LSFAG+KMD
Sbjct: 1   MEQEAEIDRLPIDLLAHIFLMITSFTDLAQASGVCRKWKQGVKQALARRQTLSFAGFKMD 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+STARL+ HAYSL+ELDISRSRWGC ITD+GL +ISLAKC+ NL SISLWG+ GITDKG
Sbjct: 61  DDSTARLVHHAYSLKELDISRSRWGCQITDNGLCQISLAKCVSNLTSISLWGITGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           VVQLI+RANSLQ+LN+GGTF+TD SL AIADSCP LK+IVLWSCR VTETGL +LVSKCR
Sbjct: 121 VVQLITRANSLQHLNVGGTFITDESLSAIADSCPRLKSIVLWSCRQVTETGLFVLVSKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSL-LNSMWSVV 233
           KLESINVWG RVP+DCFIGL+ I P+LQIK + L LN M  VV
Sbjct: 181 KLESINVWGTRVPLDCFIGLLTIRPALQIKPQGLPLNVMLPVV 223

[Close]

BLAST of CSPI02G14050 vs. TrEMBL
Match: A0A061DI07_THECC (F-box/RNI-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_000652 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 8.3e-95
Identity = 170/210 (80.95%), Postives = 190/210 (90.48%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           ME E EIDRLPIDLLAHI  MITSFTDLAQA GVCRKWK+GVK +L RRK+LSFAG KMD
Sbjct: 1   MEEEAEIDRLPIDLLAHILVMITSFTDLAQASGVCRKWKQGVKQALARRKTLSFAGCKMD 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+STARL+RHAYSL+ELDISRSRWGC ITD+GLY+ISLAKC+ NL SISLWGM GITDKG
Sbjct: 61  DDSTARLVRHAYSLKELDISRSRWGCQITDNGLYKISLAKCVSNLTSISLWGMTGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           VVQLI+ ANSLQ+LN+GGTF+TD SL AIADSCP L +IVLWSCRHVTE GL++LVSKCR
Sbjct: 121 VVQLITSANSLQHLNVGGTFITDESLSAIADSCPRLNSIVLWSCRHVTENGLIVLVSKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIK 221
           KLESINVWG RVP+DCFIGL+ ISP+L+IK
Sbjct: 181 KLESINVWGTRVPLDCFIGLLTISPALKIK 210

[Close]

BLAST of CSPI02G14050 vs. TrEMBL
Match: A0A0D2RFH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G025500 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.1e-94
Identity = 173/223 (77.58%), Postives = 197/223 (88.34%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           ME E EIDRLPIDLLAHIF MITSFTDLAQA GVCRKWK+GVK +L RR++LSFAG+KMD
Sbjct: 1   MEQEAEIDRLPIDLLAHIFLMITSFTDLAQASGVCRKWKQGVKQALARRQTLSFAGFKMD 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+STARL+ HAYSL+ELDISRSRWGC ITD+GL +ISLAKC+ +L SISLWG+ GITDKG
Sbjct: 61  DDSTARLVHHAYSLKELDISRSRWGCQITDNGLCQISLAKCVSSLTSISLWGITGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           VV+LI+RANSLQ+LN+GGTF+TD SL AIADSCP LK+IVLWSCR VTETGL +LVSKCR
Sbjct: 121 VVKLITRANSLQHLNVGGTFITDESLSAIADSCPRLKSIVLWSCRQVTETGLFVLVSKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSL-LNSMWSVV 233
           KLESINVWG RVP+DCFIGL+ I P+LQIK + L LN M  VV
Sbjct: 181 KLESINVWGTRVPLDCFIGLLTIRPALQIKPQGLPLNVMLPVV 223

[Close]

BLAST of CSPI02G14050 vs. TAIR10
Match: AT5G67140.1 (AT5G67140.1 F-box/RNI-like superfamily protein)

HSP 1 Score: 320.5 bits (820), Expect = 8.7e-88
Identity = 149/215 (69.30%), Postives = 183/215 (85.12%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           M+ E  IDRLP+DLLA+IF++ TSFT LAQA GVC+KW++ V  S+ RR++LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+ST+RL+  A++L+ELDISRSRWGCHITD+GLY+I+ A+C+ NL S+SLWGM  ITD G
Sbjct: 61  DDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           VVQLISR +SLQ+LNIGGTF+TD SL+AIA+ C  LKTI +W CRHVTE GLL+LV+KCR
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL 226
           KLESIN+WG RVPVDCFI L+ ISP+LQIK   LL
Sbjct: 181 KLESINLWGTRVPVDCFIALLTISPALQIKPMELL 215

[Close]

BLAST of CSPI02G14050 vs. TAIR10
Match: AT1G77000.1 (AT1G77000.1 RNI-like superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 62/236 (26.27%), Postives = 106/236 (44.92%), Query Frame = 1


Query: 20  LPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKM---------- 79
           +P++LL  I  ++   T +  +C +C  W++ V L L  R SLS+    M          
Sbjct: 31  IPVELLMKILNLVDDRTVIIASC-ICSGWRDAVSLGL-TRLSLSWCKKNMNSLVLSLAPK 90

Query: 80  ----------------DDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIP 139
                           +DN+   +  H + L++LD+S+S     ITDH LY  SLA+   
Sbjct: 91  FVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSS---KITDHSLY--SLARGCT 150

Query: 140 NLKSISLWGMAGITDK------------------GVVQLIS---------RANSLQNLNI 199
           NL  ++L G    +D                   G V+ +S           N LQ+LN+
Sbjct: 151 NLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL 210

Query: 200 GGTF-VTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGMR 202
           G    ++D  + ++A  CP+L+T+ L SC  +T+  ++ L ++C  L S+ ++  R
Sbjct: 211 GWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCR 259

[Close]

BLAST of CSPI02G14050 vs. TAIR10
Match: AT2G25490.1 (AT2G25490.1 EIN3-binding F box protein 1)

HSP 1 Score: 72.4 bits (176), Expect = 4.1e-13
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 98  ITDHGLYEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGG-TFVTDVSL 157
           ++D GL   S+ +  P+L S+SLW ++ ITD G++++      L+ L +   + +TD  L
Sbjct: 164 VSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGL 223

Query: 158 YAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINV 198
            AIA SCPNL  + L +C  + + GLL +   C KL+S+++
Sbjct: 224 VAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262

[Close]

BLAST of CSPI02G14050 vs. TAIR10
Match: AT5G23340.1 (AT5G23340.1 RNI-like superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11
Identity = 49/176 (27.84%), Postives = 94/176 (53.41%), Query Frame = 1


Query: 52  VKLSLGRRKSLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKC 111
           V+L L +  S SF    + D+  A +      LR L++   +    ITD GL   S+ +C
Sbjct: 69  VELDLSQSISRSFYPG-VTDSDLAVISEGFKFLRVLNLHNCKG---ITDTGL--ASIGRC 128

Query: 112 IPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGT-FVTDVSLYAIADSCPNLKTIV 171
           +  L+ + +     ++DKG+  +    + L+ L++ G  F+TD SL ++++ C +L+ + 
Sbjct: 129 LSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLEALG 188

Query: 172 LWSCRHVTETGLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLN 227
           L  C ++T++GL  LV  CRK++S+++       D  +  VA + +  +K+  LL+
Sbjct: 189 LQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLKLLD 238

[Close]

BLAST of CSPI02G14050 vs. TAIR10
Match: AT1G21410.1 (AT1G21410.1 F-box/RNI-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 54/233 (23.18%), Postives = 105/233 (45.06%), Query Frame = 1


Query: 20  LPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVK-------------------LSLGRR- 79
           +P++LL  I +++    ++  A GVC  W++ +                    LSL  + 
Sbjct: 31  IPVELLMRILSLVDD-RNVIVASGVCTGWRDAISFGLTRLRLSWCNNNMNSLVLSLVPKF 90

Query: 80  ---KSLSFAGWK--MDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEIS------- 139
              ++L+    K  ++DN+   +  H + L+ELD+S+S     ITD  LY ++       
Sbjct: 91  VKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKS---LKITDRSLYALAHGCPDLT 150

Query: 140 -----------------LAKCIPNLKSISLWG-MAGITDKGVVQLISRANSLQNLNIGGT 199
                            L +    LK ++L G +  +TD  +  + +  N +Q+LN+G  
Sbjct: 151 KLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWC 210

Query: 200 F-VTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGMR 202
             ++D  + ++A  CP+L+T+ L  C  +T+  ++ L   C  L S+ ++  R
Sbjct: 211 ENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWCVHLRSLGLYYCR 259

[Close]

BLAST of CSPI02G14050 vs. NCBI nr
Match: gi|449463955|ref|XP_004149695.1| (PREDICTED: F-box protein At5g67140-like [Cucumis sativus])

HSP 1 Score: 472.2 bits (1214), Expect = 5.1e-130
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


Query: 1   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60
           MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK
Sbjct: 4   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 63

Query: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 120
           SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL
Sbjct: 64  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 123

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET
Sbjct: 124 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 183

Query: 181 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV 233
           GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV
Sbjct: 184 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV 235

[Close]

BLAST of CSPI02G14050 vs. NCBI nr
Match: gi|659115833|ref|XP_008457759.1| (PREDICTED: F-box protein At5g67140 [Cucumis melo])

HSP 1 Score: 464.9 bits (1195), Expect = 8.1e-128
Identity = 229/232 (98.71%), Postives = 229/232 (98.71%), Query Frame = 1


Query: 1   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60
           MDS VVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK
Sbjct: 1   MDSDVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60

Query: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 120
           SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGC ITDHGLYEISLAKCIPNLKSISL
Sbjct: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISL 120

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET
Sbjct: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 180

Query: 181 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV 233
           GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMW VV
Sbjct: 181 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 232

[Close]

BLAST of CSPI02G14050 vs. NCBI nr
Match: gi|659115831|ref|XP_008457758.1| (PREDICTED: F-box protein At5g67140-like [Cucumis melo])

HSP 1 Score: 373.6 bits (958), Expect = 2.5e-100
Identity = 182/219 (83.11%), Postives = 199/219 (90.87%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           ME   EIDRLPIDLLA IFAMIT F+DLAQA GVCRKWK+GV++S+GRRKSLSFAGWKM 
Sbjct: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+STARLIRH +SLRELD SRS WGC ITDHGL +ISLAKCIPNLKSISLWGM GITDKG
Sbjct: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           VVQLISRANSLQNLNIGGT++TD+SL AIA++CPNLKTIVLW CR VTE+GLLILV KC 
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMW 230
           KLESINVW MRVPVDCF+GLVAISPSLQIKSRS+L+S W
Sbjct: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTW 219

[Close]

BLAST of CSPI02G14050 vs. NCBI nr
Match: gi|449463986|ref|XP_004149710.1| (PREDICTED: F-box protein At5g67140-like [Cucumis sativus])

HSP 1 Score: 369.8 bits (948), Expect = 3.6e-99
Identity = 176/219 (80.37%), Postives = 198/219 (90.41%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           ME   EIDRLPIDLLAHIFAMIT F+DLAQA GVCR+WK+GVK+S+GRRKSLSFAGWK++
Sbjct: 1   MESAVEIDRLPIDLLAHIFAMITYFSDLAQARGVCRRWKDGVKMSIGRRKSLSFAGWKLE 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+STA LIRH +SLRELD SRS WGC ITDHGL +IS+AKC+PNLKSISLWGM  ITDKG
Sbjct: 61  DDSTAHLIRHEHSLRELDFSRSDWGCQITDHGLNQISIAKCVPNLKSISLWGMVRITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           VVQLISRANSLQNLNIGGT++TD+SL AIAD+CPNLKTIVLW CR VTE+GLLILV  C 
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIADNCPNLKTIVLWCCRLVTESGLLILVRNCH 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMW 230
           +LESINVW MRVP+DCF+GLVAISPSLQIKSRS+L+S W
Sbjct: 181 QLESINVWAMRVPIDCFVGLVAISPSLQIKSRSVLDSTW 219

[Close]

BLAST of CSPI02G14050 vs. NCBI nr
Match: gi|703157694|ref|XP_010111793.1| (hypothetical protein L484_001772 [Morus notabilis])

HSP 1 Score: 363.2 bits (931), Expect = 3.3e-97
Identity = 174/215 (80.93%), Postives = 196/215 (91.16%), Query Frame = 1


Query: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70
           ME E EIDRLPIDLLAHIFAMITSFTDLAQA  VCRKWK+GVK SLGRR++LSFAGWKMD
Sbjct: 1   MEGEAEIDRLPIDLLAHIFAMITSFTDLAQASSVCRKWKKGVKQSLGRRENLSFAGWKMD 60

Query: 71  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130
           D+STARL+RHAYSL+ELDISRSRWGC I+D+GLY+ISLAKC+ NL SISLWGM GITDKG
Sbjct: 61  DDSTARLVRHAYSLKELDISRSRWGCQISDNGLYQISLAKCVSNLTSISLWGMTGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190
           V+QLISRA SL++LNIGGTF+TD SLYAIAD CP LK+IVLWSCRHV+E GLL+LV+KCR
Sbjct: 121 VLQLISRAKSLRHLNIGGTFITDESLYAIADGCPQLKSIVLWSCRHVSENGLLVLVNKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL 226
           KL+ INVWG RVPVDCFI L+ I P+LQIK+RSLL
Sbjct: 181 KLKMINVWGTRVPVDCFIVLLTIRPALQIKTRSLL 215

The following BLAST results are available for this feature:

BLAST of CSPI02G14050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB302_ARATH	1.6e-86	69.30	F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1	[more]
SKP2B_ARATH	2.3e-13	26.27	F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1	[more]
EBF1_ARATH	7.4e-12	35.64	EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1	[more]
FBXL7_HUMAN	1.4e-10	29.45	F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1	[more]
FBXL7_MOUSE	1.8e-10	29.45	F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1	[more]

BLAST of CSPI02G14050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPU5_CUCSA	3.5e-130	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279180 PE=4 SV=1	[more]
W9SXB4_9ROSA	2.3e-97	80.93	Uncharacterized protein OS=Morus notabilis GN=L484_001772 PE=4 SV=1	[more]
A0A0B0NU42_GOSAR	2.8e-95	78.48	Uncharacterized protein OS=Gossypium arboreum GN=F383_06272 PE=4 SV=1	[more]
A0A061DI07_THECC	8.3e-95	80.95	F-box/RNI-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_000652 PE...	[more]
A0A0D2RFH7_GOSRA	3.1e-94	77.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G025500 PE=4 SV=1	[more]

BLAST of CSPI02G14050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67140.1	8.7e-88	69.30	F-box/RNI-like superfamily protein	[more]
AT1G77000.1	1.3e-14	26.27	RNI-like superfamily protein	[more]
AT2G25490.1	4.1e-13	35.64	EIN3-binding F box protein 1	[more]
AT5G23340.1	2.3e-11	27.84	RNI-like superfamily protein	[more]
AT1G21410.1	1.1e-10	23.18	F-box/RNI-like superfamily protein	[more]

BLAST of CSPI02G14050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463955\|ref\|XP_004149695.1\|	5.1e-130	100.00	PREDICTED: F-box protein At5g67140-like [Cucumis sativus]	[more]
gi\|659115833\|ref\|XP_008457759.1\|	8.1e-128	98.71	PREDICTED: F-box protein At5g67140 [Cucumis melo]	[more]
gi\|659115831\|ref\|XP_008457758.1\|	2.5e-100	83.11	PREDICTED: F-box protein At5g67140-like [Cucumis melo]	[more]
gi\|449463986\|ref\|XP_004149710.1\|	3.6e-99	80.37	PREDICTED: F-box protein At5g67140-like [Cucumis sativus]	[more]
gi\|703157694\|ref\|XP_010111793.1\|	3.3e-97	80.93	hypothetical protein L484_001772 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR006553	Leu-rich_rpt_Cys-con_subtyp

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G14050.1	CSPI02G14050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 17..50 score: 2.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 16..50 score: 4.1
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 81..109 score: 160.0coord: 163..188 score: 5.8E-4coord: 138..162 score: 11.0coord: 112..137 score:
None	No IPR available	PANTHER	PTHR24006	FAMILY NOT NAMED	coord: 17..218 score: 3.3
None	No IPR available	unknown	SSF52047	RNI-like	coord: 73..211 score: 2.94

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G14050	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G14050	Cucumber (Chinese Long) v3	cpicucB085
CSPI02G14050	Cucumber (Chinese Long) v3	cpicucB109
CSPI02G14050	Cucumber (Chinese Long) v3	cpicucB110
CSPI02G14050	Watermelon (97103) v2	cpiwmbB098
CSPI02G14050	Watermelon (97103) v2	cpiwmbB117
CSPI02G14050	Watermelon (97103) v2	cpiwmbB123
CSPI02G14050	Wax gourd	cpiwgoB172
CSPI02G14050	Wax gourd	cpiwgoB176
CSPI02G14050	Wild cucumber (PI 183967)	cpicpiB081
CSPI02G14050	Wild cucumber (PI 183967)	cpicpiB083
CSPI02G14050	Cucumber (Gy14) v1	cgycpiB114
CSPI02G14050	Cucumber (Gy14) v1	cgycpiB541
CSPI02G14050	Cucumber (Gy14) v1	cgycpiB542
CSPI02G14050	Cucurbita maxima (Rimu)	cmacpiB546
CSPI02G14050	Cucurbita maxima (Rimu)	cmacpiB587
CSPI02G14050	Cucurbita maxima (Rimu)	cmacpiB869
CSPI02G14050	Cucurbita maxima (Rimu)	cmacpiB870
CSPI02G14050	Cucurbita moschata (Rifu)	cmocpiB535
CSPI02G14050	Cucurbita moschata (Rifu)	cmocpiB576
CSPI02G14050	Cucurbita moschata (Rifu)	cmocpiB849
CSPI02G14050	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G14050	Cucumber (Chinese Long) v2	cpicuB087
CSPI02G14050	Cucumber (Chinese Long) v2	cpicuB089
CSPI02G14050	Melon (DHL92) v3.5.1	cpimeB091
CSPI02G14050	Melon (DHL92) v3.5.1	cpimeB154
CSPI02G14050	Watermelon (Charleston Gray)	cpiwcgB119
CSPI02G14050	Watermelon (Charleston Gray)	cpiwcgB132
CSPI02G14050	Watermelon (Charleston Gray)	cpiwcgB125
CSPI02G14050	Watermelon (97103) v1	cpiwmB142
CSPI02G14050	Watermelon (97103) v1	cpiwmB151
CSPI02G14050	Cucurbita pepo (Zucchini)	cpecpiB275
CSPI02G14050	Cucurbita pepo (Zucchini)	cpecpiB480
CSPI02G14050	Cucurbita pepo (Zucchini)	cpecpiB712
CSPI02G14050	Bottle gourd (USVL1VR-Ls)	cpilsiB091
CSPI02G14050	Bottle gourd (USVL1VR-Ls)	cpilsiB094
CSPI02G14050	Bottle gourd (USVL1VR-Ls)	cpilsiB109
CSPI02G14050	Melon (DHL92) v3.6.1	cpimedB082
CSPI02G14050	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G14050	Cucumber (Gy14) v2	cgybcpiB063
CSPI02G14050	Silver-seed gourd	carcpiB0448