CSPI02G13660 (gene) Wild cucumber (PI 183967)

NameCSPI02G13660
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionDUF1279 family protein
LocationChr2 : 13605104 .. 13605952 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGGCTGAGGACATGGGCTGTACCTACGTTGAGTGGCCCATTGCATCTGATTCTGTTGACTTCTTTTCAATCAAAAGTGTGAATTTCAAAACCCTTTCTCCTGAAACTTGAAAACCCTAGCCTCAACCCTCCACCGTCAAGCTCCGACACGCCGCCTCCCCTTCCCGGACCTCTTCCCTTCTCTTTCATTAATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGAGGAACTGAATCCATCTCATTTCTTCTTCTTCGTGGATTTGCTGCTTCTTGAGATCAACAGAGTACTGTGATTCATTTTCTACTTTTTCTTTCGAGAATCAATTTTTTTTTTCAAGAAAGATTTACGACAGATTTTGAGAAGATAATTGTGTTCACATTGTCAAAATATAAATAAAAACCTCACCCTTAGTACTTATCTTGTTCTTGTTCTTCCGTTTTG

mRNA sequence

ATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGA

Coding sequence (CDS)

ATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGA
BLAST of CSPI02G13660 vs. TrEMBL
Match: A0A0A0LJH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270860 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.3e-71
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

BLAST of CSPI02G13660 vs. TrEMBL
Match: W9RV08_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002681 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-41
Identity = 101/145 (69.66%), Postives = 113/145 (77.93%), Query Frame = 1

Query: 7   GGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQI 66
           GGRFRELLKKYGKVA+GVHFSVS ASITGLYVAIKNNVDVESLLDKLHM    SKDQ   
Sbjct: 6   GGRFRELLKKYGKVALGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMGGVSSKDQ--- 65

Query: 67  NPSEATSSVDDGFMNEE---RSASEI---QPTRNRTAELAASTGGALALAVLCNKALLPI 126
                    DD  + EE   R + E+   + TRNRTAELAAS+GGALALAVLCNKAL PI
Sbjct: 66  --------ADDQVVFEETVNRPSEEVVEKEKTRNRTAELAASSGGALALAVLCNKALFPI 125

Query: 127 RIPITIALTPPIARLLARRGIVRSG 146
           R+PIT+ALTPP+AR LARR I+++G
Sbjct: 126 RVPITVALTPPVARFLARRKIIKNG 139

BLAST of CSPI02G13660 vs. TrEMBL
Match: M5VKM5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012877mg PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.3e-41
Identity = 97/153 (63.40%), Postives = 114/153 (74.51%), Query Frame = 1

Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+     GRF+ELLKKYGKVA+GVHFSVS ASITGLYVAI NN+DVE LLDKLHM    S
Sbjct: 1   MASILSAGRFKELLKKYGKVALGVHFSVSAASITGLYVAINNNLDVELLLDKLHMGSVSS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPT--------RNRTAELAASTGGALALAVL 120
           KD+   NP E    + DG +  +R  SEI P+        RNRTAELAASTGGALALAVL
Sbjct: 61  KDESTQNPPE----ISDGSVFRDRPTSEIGPSTVVIEEKKRNRTAELAASTGGALALAVL 120

Query: 121 CNKALLPIRIPITIALTPPIARLLARRGIVRSG 146
           CNKAL P+R+PIT+ALTPP++R LARR  +++G
Sbjct: 121 CNKALFPLRVPITLALTPPLSRFLARRRFIKTG 149

BLAST of CSPI02G13660 vs. TrEMBL
Match: B9HR47_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13840g PE=4 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 9.6e-41
Identity = 94/139 (67.63%), Postives = 110/139 (79.14%), Query Frame = 1

Query: 7   GGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQI 66
           GGRFRELLKKYGKVA+GVHFSVS  SITGLY+AIKNNVDVESL DK H+  F +++  Q 
Sbjct: 8   GGRFRELLKKYGKVALGVHFSVSAVSITGLYIAIKNNVDVESLFDKWHLPGFSNQEPTQQ 67

Query: 67  NPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPIRIPITI 126
           +  E  S   DGF+  +    E + TRNRTAEL ASTGGAL LAVLCNKAL PIR+PITI
Sbjct: 68  DLQELKSQ--DGFLEND----EKKTTRNRTAELVASTGGALTLAVLCNKALFPIRVPITI 127

Query: 127 ALTPPIARLLARRGIVRSG 146
           A+TPP+AR LARRGI+++G
Sbjct: 128 AVTPPLARFLARRGIIKNG 140

BLAST of CSPI02G13660 vs. TrEMBL
Match: A0A061DZ00_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006600 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-40
Identity = 97/141 (68.79%), Postives = 110/141 (78.01%), Query Frame = 1

Query: 7   GGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQI 66
           GGRFRELLKKYGKVA GVHF+VS ASITGLYVAIKNNVDVESL DKLH+    SKD+   
Sbjct: 6   GGRFRELLKKYGKVAFGVHFAVSTASITGLYVAIKNNVDVESLFDKLHLPG-LSKDEKNQ 65

Query: 67  NPSEATSSVDDGFMNEERSASEI---QPTRNRTAELAASTGGALALAVLCNKALLPIRIP 126
           NPS+   + D   M E    S +   +  RNRTAELAASTGGALALAVLCNKAL P+R+P
Sbjct: 66  NPSQQCPNPDGFVMVEPTEKSPVVVEEKGRNRTAELAASTGGALALAVLCNKALFPVRVP 125

Query: 127 ITIALTPPIARLLARRGIVRS 145
           ITIALTPP+AR LARR I+++
Sbjct: 126 ITIALTPPVARFLARRRIIKN 145

BLAST of CSPI02G13660 vs. TAIR10
Match: AT2G20940.1 (AT2G20940.1 Protein of unknown function (DUF1279))

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-34
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 1

Query: 9   RFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQINP 68
           R +E++KKYGKVA+GVHFSVSG SI+G Y+AIKNNVDVESLL+K  +  F SK+ P  NP
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENP--NP 63

Query: 69  SEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPIRIPITIAL 128
           S      + G +  +          N+T +LA S GGALALAVLCNKAL PIR+PIT+AL
Sbjct: 64  SLDLKLEEQGSVTSD----------NKTKQLAKSAGGALALAVLCNKALFPIRVPITMAL 123

Query: 129 TPPIARLLARRGIVRSG 146
           TPPIAR L +R I+++G
Sbjct: 124 TPPIARFLRQRKILKTG 128

BLAST of CSPI02G13660 vs. NCBI nr
Match: gi|449458630|ref|XP_004147050.1| (PREDICTED: uncharacterized protein LOC101221163 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.4e-71
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1

Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

BLAST of CSPI02G13660 vs. NCBI nr
Match: gi|659115735|ref|XP_008457709.1| (PREDICTED: uncharacterized protein LOC103497342 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 3.1e-69
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 1

Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQ NPSE +SSVDDGF+NEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

BLAST of CSPI02G13660 vs. NCBI nr
Match: gi|1009150688|ref|XP_015893154.1| (PREDICTED: uncharacterized protein LOC107427286 [Ziziphus jujuba])

HSP 1 Score: 178.3 bits (451), Expect = 9.5e-42
Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = 1

Query: 7   GGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQI 66
           G + RELLKKYGKVA+GVH SVS ASITGLYVAIKNNVDVES+LDKLHM  F +KDQ   
Sbjct: 5   GAKLRELLKKYGKVALGVHCSVSAASITGLYVAIKNNVDVESVLDKLHMGSFSNKDQQTQ 64

Query: 67  N---PSEATSSVDDGFM--------NEERSASEIQPTRNRTAELAASTGGALALAVLCNK 126
           N   P+E +SS +DGF+        N++ +A   +  RNRTAELAAS+GGALALA+LCNK
Sbjct: 65  NNNPPAEISSSSNDGFVFDGLPTSDNQQSTAVVPEKRRNRTAELAASSGGALALAILCNK 124

Query: 127 ALLPIRIPITIALTPPIARLLARRGIVRSG 146
           AL+PIR+PITIA+TPPIAR LARR I+++G
Sbjct: 125 ALMPIRVPITIAVTPPIARFLARRKIIKTG 154

BLAST of CSPI02G13660 vs. NCBI nr
Match: gi|694404079|ref|XP_009376938.1| (PREDICTED: uncharacterized protein LOC103965589 [Pyrus x bretschneideri])

HSP 1 Score: 176.8 bits (447), Expect = 2.8e-41
Identity = 98/149 (65.77%), Postives = 118/149 (79.19%), Query Frame = 1

Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+    GGRF+ELLKKYGKVA+GVHFSVS ASITGLYVAIKNNVDVESLLDKLHM    S
Sbjct: 1   MASVATGGRFKELLKKYGKVALGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMGSVSS 60

Query: 61  KDQPQINPSEAT--SSVDDGFMNE--ERSASEIQPTRNRTAELAASTGGALALAVLCNKA 120
           KD+   NP   +  S   DG ++E  + +A  ++  R+RTAELAASTGGALALA+LCNKA
Sbjct: 61  KDENPQNPPVISDGSEFRDGPISENGQSTAVVVEKERSRTAELAASTGGALALALLCNKA 120

Query: 121 LLPIRIPITIALTPPIARLLARRGIVRSG 146
           L PIR+PIT+ALTPP+AR LARR ++++G
Sbjct: 121 LFPIRVPITLALTPPVARFLARRRLIKTG 149

BLAST of CSPI02G13660 vs. NCBI nr
Match: gi|703123710|ref|XP_010102883.1| (hypothetical protein L484_002681 [Morus notabilis])

HSP 1 Score: 176.4 bits (446), Expect = 3.6e-41
Identity = 101/145 (69.66%), Postives = 113/145 (77.93%), Query Frame = 1

Query: 7   GGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQI 66
           GGRFRELLKKYGKVA+GVHFSVS ASITGLYVAIKNNVDVESLLDKLHM    SKDQ   
Sbjct: 6   GGRFRELLKKYGKVALGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMGGVSSKDQ--- 65

Query: 67  NPSEATSSVDDGFMNEE---RSASEI---QPTRNRTAELAASTGGALALAVLCNKALLPI 126
                    DD  + EE   R + E+   + TRNRTAELAAS+GGALALAVLCNKAL PI
Sbjct: 66  --------ADDQVVFEETVNRPSEEVVEKEKTRNRTAELAASSGGALALAVLCNKALFPI 125

Query: 127 RIPITIALTPPIARLLARRGIVRSG 146
           R+PIT+ALTPP+AR LARR I+++G
Sbjct: 126 RVPITVALTPPVARFLARRKIIKNG 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJH5_CUCSA2.3e-71100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270860 PE=4 SV=1[more]
W9RV08_9ROSA2.5e-4169.66Uncharacterized protein OS=Morus notabilis GN=L484_002681 PE=4 SV=1[more]
M5VKM5_PRUPE4.3e-4163.40Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012877mg PE=4 SV=1[more]
B9HR47_POPTR9.6e-4167.63Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13840g PE=4 SV=2[more]
A0A061DZ00_THECC2.8e-4068.79Uncharacterized protein OS=Theobroma cacao GN=TCM_006600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G20940.11.6e-3457.66 Protein of unknown function (DUF1279)[more]
Match NameE-valueIdentityDescription
gi|449458630|ref|XP_004147050.1|3.4e-71100.00PREDICTED: uncharacterized protein LOC101221163 [Cucumis sativus][more]
gi|659115735|ref|XP_008457709.1|3.1e-6997.24PREDICTED: uncharacterized protein LOC103497342 [Cucumis melo][more]
gi|1009150688|ref|XP_015893154.1|9.5e-4266.00PREDICTED: uncharacterized protein LOC107427286 [Ziziphus jujuba][more]
gi|694404079|ref|XP_009376938.1|2.8e-4165.77PREDICTED: uncharacterized protein LOC103965589 [Pyrus x bretschneideri][more]
gi|703123710|ref|XP_010102883.1|3.6e-4169.66hypothetical protein L484_002681 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0006950 response to stress
biological_process GO:0008150 biological_process
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G13660.1CSPI02G13660.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009688Domain of unknown function DUF1279PFAMPF06916DUF1279coord: 9..130
score: 4.5
NoneNo IPR availablePANTHERPTHR21377UNCHARACTERIZEDcoord: 100..144
score: 3.8E-64coord: 7..64
score: 3.8
NoneNo IPR availablePANTHERPTHR21377:SF2SUBFAMILY NOT NAMEDcoord: 7..64
score: 3.8E-64coord: 100..144
score: 3.8

The following gene(s) are paralogous to this gene:

None