CSPI02G13490 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G13490
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 13486467 .. 13487215 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAGAGTGGAAGATATTTAAGAGAGGGAAATCGTAGGAGCGAAGGAAAAACAGAGCGTGTCGGTTTGCGTTCAGATGAGCCGAGTAGGCGCGTGGCAGTCCCTCATGTTGCCGCGTACAACTCGTGGAAAACAAATTGGATTATAATTTTATAAGGAAGTTTAATTAAAATACACCATTCAAGTCAAATCATTTTTTATAAAATTAGAGTTCTAACATTGATTTTCCAAATTAACGCCACTTTCCTATCTTTTCTTTTGCTCTCTTGTTTCTTTCTTCCTCATTTCATTTTTGCCTTCCGTCTCAGAATTCACTCACAATAATTGAAATGCAGTATGAATTTGTTTTCCAATAATTCAAATGCAGCTTTACTATTATTCCCCATAAAGAGGCTGCACCAAATTATCTTTGCTTCATTGGTTTTGCTGGAGAAATCGAAGTTTGGCTGGGTGTCTATTTTCTCTACTTATGTGTGTAACTGGTGTACGTTTTGTTCAATGCATTAGTCAATATAGGTGTTGCAAGAAGACATGATGGGAAGTTTTGCCGTTCTAACACGGATTATGTCCTGCCCATGTCCGCTATTGAGAAAAAACTACAAGCTCTGTATGTATACTTTGCTTCACCATTCTTCTCAAGTTTCATGTACACTACTGATTTTTCTCCATCTTTTGATAAATTCTTCTTTTTACAGCTAACTCACTGGCAGTCCTCTAACGATAGAAGGAAGTTCACAATCTAA

mRNA sequence

ATGGAAGAAGAGAGTGGAAGATATTTAAGAGAGGGAAATCGTAGGAGCGAAGGAAAAACAGAGCGTGTCGGTTTGCGTTCAGATGAGCCGAGTAGGCGCGTGGCAGTCCCTCATGTTGCCGCCTTTACTATTATTCCCCATAAAGAGGCTGCACCAAATTATCTTTGCTTCATTGGTTTTGCTGGAGAAATCGAAGTTTGGCTGGTCAATATAGGTGTTGCAAGAAGACATGATGGGAAGTTTTGCCGTTCTAACACGGATTATGTCCTGCCCATGTCCGCTATTGAGAAAAAACTACAAGCTCTGTATGTATACTTTGCTTCACCATTCTTCTCAAGTTTCATGTACACTACTGATTTTTCTCCATCTTTTGATAAATTCTTCTTTTTACAGCTAACTCACTGGCAGTCCTCTAACGATAGAAGGAAGTTCACAATCTAA

Coding sequence (CDS)

ATGGAAGAAGAGAGTGGAAGATATTTAAGAGAGGGAAATCGTAGGAGCGAAGGAAAAACAGAGCGTGTCGGTTTGCGTTCAGATGAGCCGAGTAGGCGCGTGGCAGTCCCTCATGTTGCCGCCTTTACTATTATTCCCCATAAAGAGGCTGCACCAAATTATCTTTGCTTCATTGGTTTTGCTGGAGAAATCGAAGTTTGGCTGGTCAATATAGGTGTTGCAAGAAGACATGATGGGAAGTTTTGCCGTTCTAACACGGATTATGTCCTGCCCATGTCCGCTATTGAGAAAAAACTACAAGCTCTGTATGTATACTTTGCTTCACCATTCTTCTCAAGTTTCATGTACACTACTGATTTTTCTCCATCTTTTGATAAATTCTTCTTTTTACAGCTAACTCACTGGCAGTCCTCTAACGATAGAAGGAAGTTCACAATCTAA
Homology
[Close]
BLAST of CSPI02G13490 vs. TrEMBL
Match: A0A0A0LMC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270200 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.3e-47
Identity = 104/131 (79.39%), Postives = 109/131 (83.21%), Query Frame = 1 

Query: 1   MEEESGRYLREGNRRSEGKTERVGLRSDEPSRRVAVPHVAAFTIIPHKEAAPNYLCFIGF 60
           MEEESGRYLREGNRRSEGKTERVGLRSDEPSRRVAVP VAAFTIIPHKEAAPNYL  +  
Sbjct: 1   MEEESGRYLREGNRRSEGKTERVGLRSDEPSRRVAVPDVAAFTIIPHKEAAPNYLASL-- 60

Query: 61  AGEIEVWLVNIGVARRHDGKFCRSNTDYVLPMSAIEKKLQALYVYFASPFFSSFMYTTDF 120
                     + + +   G FCRSNTDYVLP+SAIEKKLQALYVYFASPFFSSFMYTTDF
Sbjct: 61  ----------VLLEKSKFGWFCRSNTDYVLPISAIEKKLQALYVYFASPFFSSFMYTTDF 119

Query: 121 SPSFDKFFFLQ 132
           SPSFDKFF LQ
Sbjct: 121 SPSFDKFFILQ 119

[Close]
BLAST of CSPI02G13490 vs. NCBI nr
Match: gi|700206808|gb|KGN61927.1| (hypothetical protein Csa_2G270200 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 7.6e-47
Identity = 104/131 (79.39%), Postives = 109/131 (83.21%), Query Frame = 1 

Query: 1   MEEESGRYLREGNRRSEGKTERVGLRSDEPSRRVAVPHVAAFTIIPHKEAAPNYLCFIGF 60
           MEEESGRYLREGNRRSEGKTERVGLRSDEPSRRVAVP VAAFTIIPHKEAAPNYL  +  
Sbjct: 1   MEEESGRYLREGNRRSEGKTERVGLRSDEPSRRVAVPDVAAFTIIPHKEAAPNYLASL-- 60

Query: 61  AGEIEVWLVNIGVARRHDGKFCRSNTDYVLPMSAIEKKLQALYVYFASPFFSSFMYTTDF 120
                     + + +   G FCRSNTDYVLP+SAIEKKLQALYVYFASPFFSSFMYTTDF
Sbjct: 61  ----------VLLEKSKFGWFCRSNTDYVLPISAIEKKLQALYVYFASPFFSSFMYTTDF 119

Query: 121 SPSFDKFFFLQ 132
           SPSFDKFF LQ
Sbjct: 121 SPSFDKFFILQ 119

The following BLAST results are available for this feature:
BLAST of CSPI02G13490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G13490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMC4_CUCSA5.3e-4779.39Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270200 PE=4 SV=1[more]
BLAST of CSPI02G13490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G13490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206808|gb|KGN61927.1|7.6e-4779.39hypothetical protein Csa_2G270200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G13490.1CSPI02G13490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G13490Csa2G270200Cucumber (Chinese Long) v2cpicuB065
CSPI02G13490CsaV3_2G016020Cucumber (Chinese Long) v3cpicucB080
CSPI02G13490CsGy2G013380Cucumber (Gy14) v2cgybcpiB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G13490Cucumber (Chinese Long) v3cpicucB117
CSPI02G13490Watermelon (97103) v2cpiwmbB099
CSPI02G13490Watermelon (97103) v2cpiwmbB117
CSPI02G13490Watermelon (97103) v2cpiwmbB127
CSPI02G13490Wax gourdcpiwgoB151
CSPI02G13490Wax gourdcpiwgoB181
CSPI02G13490Wild cucumber (PI 183967)cpicpiB080
CSPI02G13490Wild cucumber (PI 183967)cpicpiB089
CSPI02G13490Cucumber (Gy14) v1cgycpiB023
CSPI02G13490Cucumber (Gy14) v1cgycpiB345
CSPI02G13490Cucumber (Gy14) v1cgycpiB546
CSPI02G13490Cucurbita maxima (Rimu)cmacpiB118
CSPI02G13490Cucurbita maxima (Rimu)cmacpiB511
CSPI02G13490Cucurbita maxima (Rimu)cmacpiB547
CSPI02G13490Cucurbita maxima (Rimu)cmacpiB588
CSPI02G13490Cucurbita maxima (Rimu)cmacpiB664
CSPI02G13490Cucurbita moschata (Rifu)cmocpiB104
CSPI02G13490Cucurbita moschata (Rifu)cmocpiB500
CSPI02G13490Cucurbita moschata (Rifu)cmocpiB536
CSPI02G13490Cucurbita moschata (Rifu)cmocpiB577
CSPI02G13490Cucurbita moschata (Rifu)cmocpiB656
CSPI02G13490Cucumber (Chinese Long) v2cpicuB085
CSPI02G13490Cucumber (Chinese Long) v2cpicuB094
CSPI02G13490Melon (DHL92) v3.5.1cpimeB097
CSPI02G13490Melon (DHL92) v3.5.1cpimeB102
CSPI02G13490Melon (DHL92) v3.5.1cpimeB152
CSPI02G13490Watermelon (Charleston Gray)cpiwcgB120
CSPI02G13490Watermelon (Charleston Gray)cpiwcgB125
CSPI02G13490Watermelon (Charleston Gray)cpiwcgB131
CSPI02G13490Watermelon (97103) v1cpiwmB139
CSPI02G13490Watermelon (97103) v1cpiwmB142
CSPI02G13490Watermelon (97103) v1cpiwmB150
CSPI02G13490Cucurbita pepo (Zucchini)cpecpiB054
CSPI02G13490Cucurbita pepo (Zucchini)cpecpiB239
CSPI02G13490Cucurbita pepo (Zucchini)cpecpiB269
CSPI02G13490Cucurbita pepo (Zucchini)cpecpiB668
CSPI02G13490Cucurbita pepo (Zucchini)cpecpiB713
CSPI02G13490Bottle gourd (USVL1VR-Ls)cpilsiB091
CSPI02G13490Bottle gourd (USVL1VR-Ls)cpilsiB100
CSPI02G13490Bottle gourd (USVL1VR-Ls)cpilsiB108
CSPI02G13490Melon (DHL92) v3.6.1cpimedB089
CSPI02G13490Melon (DHL92) v3.6.1cpimedB098
CSPI02G13490Cucumber (Gy14) v2cgybcpiB303
CSPI02G13490Silver-seed gourdcarcpiB0347
CSPI02G13490Silver-seed gourdcarcpiB0380
CSPI02G13490Silver-seed gourdcarcpiB0440
CSPI02G13490Silver-seed gourdcarcpiB0838
CSPI02G13490Silver-seed gourdcarcpiB1051